RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 PXDNLA1KZ92 1463 aa20.87■□□□□ 0.93
SSBP4-214ENST00000607020 TRAPPC3LQ5T215 181 aa20.86■□□□□ 0.93
SSBP4-214ENST00000607020 RC3H1Q5TC82 1133 aaKnown RBP20.86■□□□□ 0.93
SSBP4-214ENST00000607020 PLEKHG2Q9H7P9 1386 aa20.85■□□□□ 0.93
SSBP4-214ENST00000607020 ADRA2BP18089 450 aa20.85■□□□□ 0.93
SSBP4-214ENST00000607020 RTCBQ9Y3I0 505 aaKnown RBP20.85■□□□□ 0.93
SSBP4-214ENST00000607020 UBR3Q6ZT12 1888 aa20.84■□□□□ 0.93
SSBP4-214ENST00000607020 A0A0G2JLW4 131 aa20.84■□□□□ 0.93
SSBP4-214ENST00000607020 BCS1LQ9Y276 419 aa20.84■□□□□ 0.93
SSBP4-214ENST00000607020 PPM1GO15355 546 aaPredicted RBP20.83■□□□□ 0.93
SSBP4-214ENST00000607020 MAP2P11137 1827 aaKnown RBP20.83■□□□□ 0.92
SSBP4-214ENST00000607020 PKD1L3Q7Z443 1732 aa20.82■□□□□ 0.92
SSBP4-214ENST00000607020 ERVV-2B6SEH9 535 aa20.82■□□□□ 0.92
SSBP4-214ENST00000607020 ARHGEF1Q92888 912 aaKnown RBP20.82■□□□□ 0.92
SSBP4-214ENST00000607020 SLC4A9Q96Q91 983 aa20.82■□□□□ 0.92
SSBP4-214ENST00000607020 KDRP35968 1356 aa20.82■□□□□ 0.92
SSBP4-214ENST00000607020 C10orf71Q711Q0 1435 aa20.81■□□□□ 0.92
SSBP4-214ENST00000607020 ARHGAP27Q6ZUM4 889 aa20.81■□□□□ 0.92
SSBP4-214ENST00000607020 RBM46Q8TBY0 533 aaKnown RBP20.81■□□□□ 0.92
SSBP4-214ENST00000607020 CCDC87Q9NVE4 849 aa20.81■□□□□ 0.92
SSBP4-214ENST00000607020 POLKQ9UBT6 870 aa20.81■□□□□ 0.92
SSBP4-214ENST00000607020 RPS6KA4O75676 772 aa20.8■□□□□ 0.92
SSBP4-214ENST00000607020 GYS1P13807 737 aa20.8■□□□□ 0.92
SSBP4-214ENST00000607020 DPEP1P16444 411 aa20.8■□□□□ 0.92
SSBP4-214ENST00000607020 NMRK2Q9NPI5 230 aa20.8■□□□□ 0.92
SSBP4-214ENST00000607020 CNTNAP4Q9C0A0 1308 aa20.79■□□□□ 0.92
SSBP4-214ENST00000607020 KCNA3P22001 575 aa20.79■□□□□ 0.92
SSBP4-214ENST00000607020 FCHSD2O94868 740 aa20.78■□□□□ 0.92
SSBP4-214ENST00000607020 ITGB4P16144 1822 aa20.78■□□□□ 0.92
SSBP4-214ENST00000607020 HSP90AB1P08238 724 aaKnown RBP20.77■□□□□ 0.92
SSBP4-214ENST00000607020 RFC4P35249 363 aa20.77■□□□□ 0.92
SSBP4-214ENST00000607020 DCAF5Q96JK2 942 aa20.77■□□□□ 0.92
SSBP4-214ENST00000607020 PARP3Q9Y6F1 533 aa20.77■□□□□ 0.92
SSBP4-214ENST00000607020 FSTL1Q12841 308 aa20.76■□□□□ 0.91
SSBP4-214ENST00000607020 EIF4A2Q14240 407 aaKnown RBP20.76■□□□□ 0.91
SSBP4-214ENST00000607020 C9orf131Q5VYM1 1079 aa20.75■□□□□ 0.91
SSBP4-214ENST00000607020 JMYQ8N9B5 988 aa20.75■□□□□ 0.91
SSBP4-214ENST00000607020 RBM42Q9BTD8 480 aaKnown RBP20.75■□□□□ 0.91
SSBP4-214ENST00000607020 PIM2Q9P1W9 311 aa20.74■□□□□ 0.91
SSBP4-214ENST00000607020 KLRG1Q96E93 195 aa20.73■□□□□ 0.91
SSBP4-214ENST00000607020 KIF13BQ9NQT8 1826 aa20.72■□□□□ 0.91
SSBP4-214ENST00000607020 PLEKHO1Q53GL0 409 aaPredicted RBP20.72■□□□□ 0.91
SSBP4-214ENST00000607020 C16orf71Q8IYS4 520 aaPredicted RBP20.71■□□□□ 0.91
SSBP4-214ENST00000607020 KIAA1551Q9HCM1 1747 aa20.7■□□□□ 0.9
SSBP4-214ENST00000607020 CABP4P57796 275 aa20.7■□□□□ 0.9
SSBP4-214ENST00000607020 AMOTQ4VCS5 1084 aa20.7■□□□□ 0.9
SSBP4-214ENST00000607020 DALRD3Q5D0E6 543 aaKnown RBP20.7■□□□□ 0.9
SSBP4-214ENST00000607020 KDM2BQ8NHM5 1336 aa20.7■□□□□ 0.9
SSBP4-214ENST00000607020 TRIM26Q12899 539 aaPredicted RBP20.69■□□□□ 0.9
SSBP4-214ENST00000607020 KIF20BQ96Q89 1820 aa20.69■□□□□ 0.9
SSBP4-214ENST00000607020 ZNF831Q5JPB2 1677 aa20.68■□□□□ 0.9
SSBP4-214ENST00000607020 ANKRD26Q9UPS8 1709 aa20.67■□□□□ 0.9
SSBP4-214ENST00000607020 CRKLP46109 303 aaKnown RBP20.67■□□□□ 0.9
SSBP4-214ENST00000607020 FKBP8Q14318 412 aa20.67■□□□□ 0.9
SSBP4-214ENST00000607020 USP42Q9H9J4 1324 aaKnown RBP20.67■□□□□ 0.9
SSBP4-214ENST00000607020 TM4SF1P30408 202 aa20.66■□□□□ 0.9
SSBP4-214ENST00000607020 DDR1Q08345 913 aa20.66■□□□□ 0.9
SSBP4-214ENST00000607020 ZNF530Q6P9A1 599 aaPredicted RBP20.66■□□□□ 0.9
SSBP4-214ENST00000607020 RNF181Q9P0P0 153 aa20.66■□□□□ 0.9
SSBP4-214ENST00000607020 C4AP0C0L4 1744 aa20.66■□□□□ 0.9
SSBP4-214ENST00000607020 KDM6AO15550 1401 aaPredicted RBP20.65■□□□□ 0.9
SSBP4-214ENST00000607020 MTHFSP49914 203 aa20.65■□□□□ 0.9
SSBP4-214ENST00000607020 COL13A1Q5TAT6 717 aaPredicted RBP20.65■□□□□ 0.9
SSBP4-214ENST00000607020 RRAGCQ9HB90 399 aa20.65■□□□□ 0.9
SSBP4-214ENST00000607020 SRP68Q9UHB9 627 aaKnown RBP20.65■□□□□ 0.9
SSBP4-214ENST00000607020 ZC3H4Q9UPT8 1303 aaKnown RBP20.64■□□□□ 0.89
SSBP4-214ENST00000607020 PTCD1O75127 700 aaKnown RBP20.64■□□□□ 0.89
SSBP4-214ENST00000607020 HTRA3P83110 453 aa20.64■□□□□ 0.89
SSBP4-214ENST00000607020 POLRMTO00411 1230 aaKnown RBP20.63■□□□□ 0.89
SSBP4-214ENST00000607020 TNNT2P45379 298 aaPredicted RBP20.63■□□□□ 0.89
SSBP4-214ENST00000607020 NFATC2IPQ8NCF5 419 aa20.63■□□□□ 0.89
SSBP4-214ENST00000607020 N4BP2Q86UW6 1770 aaPredicted RBP20.62■□□□□ 0.89
SSBP4-214ENST00000607020 CHRNA5P30532 468 aa20.62■□□□□ 0.89
SSBP4-214ENST00000607020 INTS5Q6P9B9 1019 aaKnown RBP20.62■□□□□ 0.89
SSBP4-214ENST00000607020 SMC1BQ8NDV3 1235 aa20.62■□□□□ 0.89
SSBP4-214ENST00000607020 C1orf141Q5JVX7 400 aa20.61■□□□□ 0.89
SSBP4-214ENST00000607020 TIMELESSQ9UNS1 1208 aa20.61■□□□□ 0.89
SSBP4-214ENST00000607020 KCPQ6ZWJ8 1503 aa20.61■□□□□ 0.89
SSBP4-214ENST00000607020 GLTPD2A6NH11 291 aa20.57■□□□□ 0.88
SSBP4-214ENST00000607020 ZPR1O75312 459 aa20.57■□□□□ 0.88
SSBP4-214ENST00000607020 COL5A3P25940 1745 aaPredicted RBP20.57■□□□□ 0.88
SSBP4-214ENST00000607020 WDR90Q96KV7 1748 aa20.56■□□□□ 0.88
SSBP4-214ENST00000607020 VEGFAP15692 232 aaPredicted RBP20.56■□□□□ 0.88
SSBP4-214ENST00000607020 LMNB1P20700 586 aa20.56■□□□□ 0.88
SSBP4-214ENST00000607020 USPL1Q5W0Q7 1092 aa20.56■□□□□ 0.88
SSBP4-214ENST00000607020 AEBP1Q8IUX7 1158 aa20.56■□□□□ 0.88
SSBP4-214ENST00000607020 BRCA1P38398 1863 aaKnown RBP20.56■□□□□ 0.88
SSBP4-214ENST00000607020 SOS1Q07889 1333 aaPredicted RBP20.55■□□□□ 0.88
SSBP4-214ENST00000607020 PRELPP51888 382 aa20.55■□□□□ 0.88
SSBP4-214ENST00000607020 MYH14Q7Z406 1995 aaKnown RBP20.55■□□□□ 0.88
SSBP4-214ENST00000607020 DNAJC10Q8IXB1 793 aa20.54■□□□□ 0.88
SSBP4-214ENST00000607020 TNS4Q8IZW8 715 aa20.54■□□□□ 0.88
SSBP4-214ENST00000607020 NARFQ9UHQ1 456 aa20.54■□□□□ 0.88
SSBP4-214ENST00000607020 ARFGEF1Q9Y6D6 1849 aa20.54■□□□□ 0.88
SSBP4-214ENST00000607020 CYP19A1P11511 503 aaPredicted RBP20.53■□□□□ 0.88
SSBP4-214ENST00000607020 NFIXQ14938 502 aa20.53■□□□□ 0.88
SSBP4-214ENST00000607020 AKAP4Q5JQC9 854 aa20.53■□□□□ 0.88
SSBP4-214ENST00000607020 SULT6B1Q6IMI4 303 aa20.53■□□□□ 0.88
SSBP4-214ENST00000607020 PANK3Q9H999 370 aa20.53■□□□□ 0.88
SSBP4-214ENST00000607020 SLC52A2Q9HAB3 445 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms