RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 ADRA2BP18089 450 aa13.11□□□□□ -0.31
VRK3-224ENST00000601849 RFC4P35249 363 aa13.11□□□□□ -0.31
VRK3-224ENST00000601849 CABP4P57796 275 aa13.11□□□□□ -0.31
VRK3-224ENST00000601849 C1orf141Q5JVX7 400 aa13.11□□□□□ -0.31
VRK3-224ENST00000601849 NCAPD2Q15021 1401 aa13.11□□□□□ -0.31
VRK3-224ENST00000601849 TGFB2P61812 414 aa13.1□□□□□ -0.31
VRK3-224ENST00000601849 RC3H1Q5TC82 1133 aaKnown RBP13.1□□□□□ -0.31
VRK3-224ENST00000601849 ZNF526Q8TF50 670 aaPredicted RBP13.1□□□□□ -0.31
VRK3-224ENST00000601849 ITGB4P16144 1822 aa13.1□□□□□ -0.31
VRK3-224ENST00000601849 TAF1LQ8IZX4 1826 aa13.1□□□□□ -0.31
VRK3-224ENST00000601849 ATP10DQ9P241 1426 aa13.1□□□□□ -0.31
VRK3-224ENST00000601849 PKD1L3Q7Z443 1732 aa13.1□□□□□ -0.31
VRK3-224ENST00000601849 MAP2P11137 1827 aaKnown RBP13.09□□□□□ -0.31
VRK3-224ENST00000601849 MMP10P09238 476 aa13.09□□□□□ -0.31
VRK3-224ENST00000601849 MTHFSP49914 203 aa13.09□□□□□ -0.31
VRK3-224ENST00000601849 ITPK1Q13572 414 aa13.09□□□□□ -0.31
VRK3-224ENST00000601849 MORC1Q86VD1 984 aa13.09□□□□□ -0.31
VRK3-224ENST00000601849 PANK3Q9H999 370 aa13.09□□□□□ -0.31
VRK3-224ENST00000601849 CCDC87Q9NVE4 849 aa13.09□□□□□ -0.31
VRK3-224ENST00000601849 ZNF530Q6P9A1 599 aaPredicted RBP13.08□□□□□ -0.32
VRK3-224ENST00000601849 SMIM5Q71RC9 77 aa13.08□□□□□ -0.32
VRK3-224ENST00000601849 PARP3Q9Y6F1 533 aa13.08□□□□□ -0.32
VRK3-224ENST00000601849 AMIGO3Q86WK7 504 aa13.07□□□□□ -0.32
VRK3-224ENST00000601849 WWC3Q9ULE0 1092 aa13.07□□□□□ -0.32
VRK3-224ENST00000601849 KNSTRNQ9Y448 316 aa13.07□□□□□ -0.32
VRK3-224ENST00000601849 TOGARAM1Q9Y4F4 1720 aa13.06□□□□□ -0.32
VRK3-224ENST00000601849 RPS6KA4O75676 772 aa13.06□□□□□ -0.32
VRK3-224ENST00000601849 ARHGEF1Q92888 912 aaKnown RBP13.06□□□□□ -0.32
VRK3-224ENST00000601849 BCS1LQ9Y276 419 aa13.06□□□□□ -0.32
VRK3-224ENST00000601849 CEP350Q5VT06 3117 aa13.06□□□□□ -0.32
VRK3-224ENST00000601849 ARHGAP27Q6ZUM4 889 aa13.05□□□□□ -0.32
VRK3-224ENST00000601849 UBR3Q6ZT12 1888 aa13.05□□□□□ -0.32
VRK3-224ENST00000601849 CNTNAP4Q9C0A0 1308 aa13.05□□□□□ -0.32
VRK3-224ENST00000601849 ANKRD26Q9UPS8 1709 aa13.05□□□□□ -0.32
VRK3-224ENST00000601849 PTCD1O75127 700 aaKnown RBP13.04□□□□□ -0.32
VRK3-224ENST00000601849 HSPA5P11021 654 aaKnown RBP13.04□□□□□ -0.32
VRK3-224ENST00000601849 HSPA6P17066 643 aa13.04□□□□□ -0.32
VRK3-224ENST00000601849 SULT6B1Q6IMI4 303 aa13.04□□□□□ -0.32
VRK3-224ENST00000601849 NFATC2IPQ8NCF5 419 aa13.04□□□□□ -0.32
VRK3-224ENST00000601849 A0A0G2JLW4 131 aa13.03□□□□□ -0.32
VRK3-224ENST00000601849 FCHSD2O94868 740 aa13.03□□□□□ -0.32
VRK3-224ENST00000601849 CCER1Q8TC90 406 aaPredicted RBP13.03□□□□□ -0.32
VRK3-224ENST00000601849 GYS1P13807 737 aa13.02□□□□□ -0.33
VRK3-224ENST00000601849 PIM2Q9P1W9 311 aa13.02□□□□□ -0.33
VRK3-224ENST00000601849 ADCY9O60503 1353 aa13.02□□□□□ -0.33
VRK3-224ENST00000601849 ZPR1O75312 459 aa13.01□□□□□ -0.33
VRK3-224ENST00000601849 AKAP4Q5JQC9 854 aa13.01□□□□□ -0.33
VRK3-224ENST00000601849 C16orf71Q8IYS4 520 aaPredicted RBP13.01□□□□□ -0.33
VRK3-224ENST00000601849 SLC4A9Q96Q91 983 aa13.01□□□□□ -0.33
VRK3-224ENST00000601849 KDRP35968 1356 aa13□□□□□ -0.33
VRK3-224ENST00000601849 DPEP1P16444 411 aa13□□□□□ -0.33
VRK3-224ENST00000601849 CRKLP46109 303 aaKnown RBP13□□□□□ -0.33
VRK3-224ENST00000601849 ZNF831Q5JPB2 1677 aa12.99□□□□□ -0.33
VRK3-224ENST00000601849 TOMM70O94826 608 aa12.99□□□□□ -0.33
VRK3-224ENST00000601849 DALRD3Q5D0E6 543 aaKnown RBP12.99□□□□□ -0.33
VRK3-224ENST00000601849 IFFO2Q5TF58 517 aa12.99□□□□□ -0.33
VRK3-224ENST00000601849 IL13P35225 146 aa12.98□□□□□ -0.33
VRK3-224ENST00000601849 APLP1P51693 650 aa12.98□□□□□ -0.33
VRK3-224ENST00000601849 AEBP1Q8IUX7 1158 aa12.98□□□□□ -0.33
VRK3-224ENST00000601849 PXDNLA1KZ92 1463 aa12.97□□□□□ -0.33
VRK3-224ENST00000601849 KIF3CO14782 793 aa12.97□□□□□ -0.33
VRK3-224ENST00000601849 SLC52A2Q9HAB3 445 aa12.97□□□□□ -0.33
VRK3-224ENST00000601849 CICQ96RK0 1608 aaPredicted RBP12.97□□□□□ -0.33
VRK3-224ENST00000601849 KDM6AO15550 1401 aaPredicted RBP12.96□□□□□ -0.33
VRK3-224ENST00000601849 C10orf71Q711Q0 1435 aa12.96□□□□□ -0.33
VRK3-224ENST00000601849 KDM2BQ8NHM5 1336 aa12.96□□□□□ -0.33
VRK3-224ENST00000601849 USP42Q9H9J4 1324 aaKnown RBP12.96□□□□□ -0.33
VRK3-224ENST00000601849 FKBP8Q14318 412 aa12.96□□□□□ -0.33
VRK3-224ENST00000601849 NPM2Q86SE8 214 aaKnown RBP12.96□□□□□ -0.33
VRK3-224ENST00000601849 DIAPH1O60610 1272 aaKnown RBP12.95□□□□□ -0.34
VRK3-224ENST00000601849 C9orf131Q5VYM1 1079 aa12.95□□□□□ -0.34
VRK3-224ENST00000601849 SRP68Q9UHB9 627 aaKnown RBP12.95□□□□□ -0.34
VRK3-224ENST00000601849 C4AP0C0L4 1744 aa12.94□□□□□ -0.34
VRK3-224ENST00000601849 TM4SF1P30408 202 aa12.94□□□□□ -0.34
VRK3-224ENST00000601849 USPL1Q5W0Q7 1092 aa12.94□□□□□ -0.34
VRK3-224ENST00000601849 INTS5Q6P9B9 1019 aaKnown RBP12.94□□□□□ -0.34
VRK3-224ENST00000601849 TTC5Q8N0Z6 440 aa12.94□□□□□ -0.34
VRK3-224ENST00000601849 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
VRK3-224ENST00000601849 KIF13BQ9NQT8 1826 aa12.93□□□□□ -0.34
VRK3-224ENST00000601849 RNMTO43148 476 aaKnown RBP12.93□□□□□ -0.34
VRK3-224ENST00000601849 STARD3NLO95772 234 aa12.93□□□□□ -0.34
VRK3-224ENST00000601849 HMOX1P09601 288 aa12.93□□□□□ -0.34
VRK3-224ENST00000601849 KCNA3P22001 575 aa12.93□□□□□ -0.34
VRK3-224ENST00000601849 DNAJC10Q8IXB1 793 aa12.93□□□□□ -0.34
VRK3-224ENST00000601849 LGR6Q9HBX8 967 aa12.93□□□□□ -0.34
VRK3-224ENST00000601849 NARFQ9UHQ1 456 aa12.93□□□□□ -0.34
VRK3-224ENST00000601849 N4BP2Q86UW6 1770 aaPredicted RBP12.92□□□□□ -0.34
VRK3-224ENST00000601849 A0A087WZG4 1122 aa12.92□□□□□ -0.34
VRK3-224ENST00000601849 CYP19A1P11511 503 aaPredicted RBP12.92□□□□□ -0.34
VRK3-224ENST00000601849 COL5A3P25940 1745 aaPredicted RBP12.92□□□□□ -0.34
VRK3-224ENST00000601849 AMER1Q5JTC6 1135 aaPredicted RBP12.92□□□□□ -0.34
VRK3-224ENST00000601849 RBM46Q8TBY0 533 aaKnown RBP12.92□□□□□ -0.34
VRK3-224ENST00000601849 TEX13AQ9BXU3 409 aaPredicted RBP12.92□□□□□ -0.34
VRK3-224ENST00000601849 RNF181Q9P0P0 153 aa12.92□□□□□ -0.34
VRK3-224ENST00000601849 POLRMTO00411 1230 aaKnown RBP12.91□□□□□ -0.34
VRK3-224ENST00000601849 DDR1Q08345 913 aa12.91□□□□□ -0.34
VRK3-224ENST00000601849 TEFQ10587 303 aa12.91□□□□□ -0.34
VRK3-224ENST00000601849 FSTL1Q12841 308 aa12.91□□□□□ -0.34
VRK3-224ENST00000601849 SLC39A6Q13433 755 aa12.91□□□□□ -0.34
VRK3-224ENST00000601849 SOS1Q07889 1333 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms