RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 IFNL2Q8IZJ0 200 aa23.31■■□□□ 1.32
USE1-208ENST00000600970 N4BP2Q86UW6 1770 aaPredicted RBP23.3■■□□□ 1.32
USE1-208ENST00000600970 KIF3CO14782 793 aa23.3■■□□□ 1.32
USE1-208ENST00000600970 ATG3Q9NT62 314 aa23.3■■□□□ 1.32
USE1-208ENST00000600970 MMP10P09238 476 aa23.29■■□□□ 1.32
USE1-208ENST00000600970 PXDNLA1KZ92 1463 aa23.29■■□□□ 1.32
USE1-208ENST00000600970 POLKQ9UBT6 870 aa23.27■■□□□ 1.32
USE1-208ENST00000600970 ZNF831Q5JPB2 1677 aa23.26■■□□□ 1.31
USE1-208ENST00000600970 KDRP35968 1356 aa23.26■■□□□ 1.31
USE1-208ENST00000600970 TGFB2P61812 414 aa23.24■■□□□ 1.31
USE1-208ENST00000600970 RTCBQ9Y3I0 505 aaKnown RBP23.24■■□□□ 1.31
USE1-208ENST00000600970 COL5A3P25940 1745 aaPredicted RBP23.24■■□□□ 1.31
USE1-208ENST00000600970 EIF4A2Q14240 407 aaKnown RBP23.23■■□□□ 1.31
USE1-208ENST00000600970 TRAPPC3LQ5T215 181 aa23.23■■□□□ 1.31
USE1-208ENST00000600970 SLC4A9Q96Q91 983 aa23.23■■□□□ 1.31
USE1-208ENST00000600970 A0A0G2JLW4 131 aa23.22■■□□□ 1.31
USE1-208ENST00000600970 NLGN1Q8N2Q7 840 aa23.22■■□□□ 1.31
USE1-208ENST00000600970 BCS1LQ9Y276 419 aa23.22■■□□□ 1.31
USE1-208ENST00000600970 C10orf71Q711Q0 1435 aa23.22■■□□□ 1.31
USE1-208ENST00000600970 C4AP0C0L4 1744 aa23.22■■□□□ 1.31
USE1-208ENST00000600970 BRCA1P38398 1863 aaKnown RBP23.22■■□□□ 1.31
USE1-208ENST00000600970 PLEKHG2Q9H7P9 1386 aa23.2■■□□□ 1.3
USE1-208ENST00000600970 ARHGEF1Q92888 912 aaKnown RBP23.2■■□□□ 1.3
USE1-208ENST00000600970 RBM42Q9BTD8 480 aaKnown RBP23.2■■□□□ 1.3
USE1-208ENST00000600970 ERVV-2B6SEH9 535 aa23.19■■□□□ 1.3
USE1-208ENST00000600970 RC3H1Q5TC82 1133 aaKnown RBP23.19■■□□□ 1.3
USE1-208ENST00000600970 GYS1P13807 737 aa23.18■■□□□ 1.3
USE1-208ENST00000600970 ADRA2BP18089 450 aa23.18■■□□□ 1.3
USE1-208ENST00000600970 CCDC87Q9NVE4 849 aa23.18■■□□□ 1.3
USE1-208ENST00000600970 CNTNAP4Q9C0A0 1308 aa23.17■■□□□ 1.3
USE1-208ENST00000600970 TOMM70O94826 608 aa23.17■■□□□ 1.3
USE1-208ENST00000600970 DPEP1P16444 411 aa23.17■■□□□ 1.3
USE1-208ENST00000600970 TNNT2P45379 298 aaPredicted RBP23.17■■□□□ 1.3
USE1-208ENST00000600970 APLP1P51693 650 aa23.17■■□□□ 1.3
USE1-208ENST00000600970 ARHGAP27Q6ZUM4 889 aa23.17■■□□□ 1.3
USE1-208ENST00000600970 MYH14Q7Z406 1995 aaKnown RBP23.17■■□□□ 1.3
USE1-208ENST00000600970 RPS6KA4O75676 772 aa23.16■■□□□ 1.3
USE1-208ENST00000600970 DCAF5Q96JK2 942 aa23.16■■□□□ 1.3
USE1-208ENST00000600970 ARFGEF1Q9Y6D6 1849 aa23.15■■□□□ 1.3
USE1-208ENST00000600970 FCHSD2O94868 740 aa23.15■■□□□ 1.3
USE1-208ENST00000600970 HSP90AB1P08238 724 aaKnown RBP23.15■■□□□ 1.3
USE1-208ENST00000600970 RFC4P35249 363 aa23.15■■□□□ 1.3
USE1-208ENST00000600970 PARP3Q9Y6F1 533 aa23.15■■□□□ 1.3
USE1-208ENST00000600970 KDM6AO15550 1401 aaPredicted RBP23.14■■□□□ 1.29
USE1-208ENST00000600970 KCNA3P22001 575 aa23.13■■□□□ 1.29
USE1-208ENST00000600970 DNAJC5GQ8N7S2 189 aa23.13■■□□□ 1.29
USE1-208ENST00000600970 NMRK2Q9NPI5 230 aa23.13■■□□□ 1.29
USE1-208ENST00000600970 CABP4P57796 275 aa23.12■■□□□ 1.29
USE1-208ENST00000600970 PLEKHO1Q53GL0 409 aaPredicted RBP23.12■■□□□ 1.29
USE1-208ENST00000600970 ZNF530Q6P9A1 599 aaPredicted RBP23.11■■□□□ 1.29
USE1-208ENST00000600970 POLR3GLQ9BT43 218 aa23.11■■□□□ 1.29
USE1-208ENST00000600970 WDR90Q96KV7 1748 aa23.1■■□□□ 1.29
USE1-208ENST00000600970 TJP1Q07157 1748 aa23.09■■□□□ 1.29
USE1-208ENST00000600970 AMOTQ4VCS5 1084 aa23.09■■□□□ 1.29
USE1-208ENST00000600970 C9orf131Q5VYM1 1079 aa23.09■■□□□ 1.29
USE1-208ENST00000600970 PTCD1O75127 700 aaKnown RBP23.08■■□□□ 1.29
USE1-208ENST00000600970 CRKLP46109 303 aaKnown RBP23.07■■□□□ 1.28
USE1-208ENST00000600970 MTHFSP49914 203 aa23.07■■□□□ 1.28
USE1-208ENST00000600970 PIM2Q9P1W9 311 aa23.07■■□□□ 1.28
USE1-208ENST00000600970 SRP68Q9UHB9 627 aaKnown RBP23.07■■□□□ 1.28
USE1-208ENST00000600970 FKBP8Q14318 412 aa23.06■■□□□ 1.28
USE1-208ENST00000600970 RBM46Q8TBY0 533 aaKnown RBP23.06■■□□□ 1.28
USE1-208ENST00000600970 NFATC2IPQ8NCF5 419 aa23.05■■□□□ 1.28
USE1-208ENST00000600970 USP42Q9H9J4 1324 aaKnown RBP23.05■■□□□ 1.28
USE1-208ENST00000600970 ADAMTS7Q9UKP4 1686 aa23.04■■□□□ 1.28
USE1-208ENST00000600970 DDR1Q08345 913 aa23.04■■□□□ 1.28
USE1-208ENST00000600970 C1orf141Q5JVX7 400 aa23.04■■□□□ 1.28
USE1-208ENST00000600970 AEBP1Q8IUX7 1158 aa23.04■■□□□ 1.28
USE1-208ENST00000600970 SCN11AQ9UI33 1791 aa23.04■■□□□ 1.28
USE1-208ENST00000600970 KCPQ6ZWJ8 1503 aa23.03■■□□□ 1.28
USE1-208ENST00000600970 SBF1O95248 1867 aa23.03■■□□□ 1.28
USE1-208ENST00000600970 DALRD3Q5D0E6 543 aaKnown RBP23.03■■□□□ 1.28
USE1-208ENST00000600970 C16orf71Q8IYS4 520 aaPredicted RBP23.03■■□□□ 1.28
USE1-208ENST00000600970 TIMELESSQ9UNS1 1208 aa23.03■■□□□ 1.28
USE1-208ENST00000600970 PANK3Q9H999 370 aa23.02■■□□□ 1.28
USE1-208ENST00000600970 RNF181Q9P0P0 153 aa23.01■■□□□ 1.27
USE1-208ENST00000600970 TM4SF1P30408 202 aa23■■□□□ 1.27
USE1-208ENST00000600970 CHRNA5P30532 468 aa23■■□□□ 1.27
USE1-208ENST00000600970 FSTL1Q12841 308 aa23■■□□□ 1.27
USE1-208ENST00000600970 INTS5Q6P9B9 1019 aaKnown RBP23■■□□□ 1.27
USE1-208ENST00000600970 KDM2BQ8NHM5 1336 aa23■■□□□ 1.27
USE1-208ENST00000600970 TNRC6CQ9HCJ0 1690 aaKnown RBP23■■□□□ 1.27
USE1-208ENST00000600970 POLRMTO00411 1230 aaKnown RBP22.99■■□□□ 1.27
USE1-208ENST00000600970 HTRA3P83110 453 aa22.99■■□□□ 1.27
USE1-208ENST00000600970 SULT6B1Q6IMI4 303 aa22.99■■□□□ 1.27
USE1-208ENST00000600970 TRIM26Q12899 539 aaPredicted RBP22.98■■□□□ 1.27
USE1-208ENST00000600970 RRAGCQ9HB90 399 aa22.98■■□□□ 1.27
USE1-208ENST00000600970 KLRG1Q96E93 195 aa22.97■■□□□ 1.27
USE1-208ENST00000600970 AFDNP55196 1824 aaKnown RBP22.96■■□□□ 1.27
USE1-208ENST00000600970 USPL1Q5W0Q7 1092 aa22.96■■□□□ 1.27
USE1-208ENST00000600970 MORC1Q86VD1 984 aa22.96■■□□□ 1.27
USE1-208ENST00000600970 VIRMAQ69YN4 1812 aaKnown RBP22.96■■□□□ 1.27
USE1-208ENST00000600970 DNAJC10Q8IXB1 793 aa22.95■■□□□ 1.26
USE1-208ENST00000600970 SOS1Q07889 1333 aaPredicted RBP22.94■■□□□ 1.26
USE1-208ENST00000600970 ZPR1O75312 459 aa22.94■■□□□ 1.26
USE1-208ENST00000600970 JMYQ8N9B5 988 aa22.94■■□□□ 1.26
USE1-208ENST00000600970 NRXN2Q9P2S2 1712 aa22.94■■□□□ 1.26
USE1-208ENST00000600970 IL13P35225 146 aa22.93■■□□□ 1.26
USE1-208ENST00000600970 AKAP4Q5JQC9 854 aa22.93■■□□□ 1.26
USE1-208ENST00000600970 DLEC1Q9Y238 1755 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms