RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ATP6V1AP38606 617 aa8.51□□□□□ -1.05
VRK3-220ENST00000600259 EIF4A2Q14240 407 aaKnown RBP8.51□□□□□ -1.05
VRK3-220ENST00000600259 RC3H1Q5TC82 1133 aaKnown RBP8.51□□□□□ -1.05
VRK3-220ENST00000600259 DNAJC5GQ8N7S2 189 aa8.51□□□□□ -1.05
VRK3-220ENST00000600259 ZNF526Q8TF50 670 aaPredicted RBP8.51□□□□□ -1.05
VRK3-220ENST00000600259 PKD1L3Q7Z443 1732 aa8.51□□□□□ -1.05
VRK3-220ENST00000600259 UBR3Q6ZT12 1888 aa8.51□□□□□ -1.05
VRK3-220ENST00000600259 KDRP35968 1356 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 ITGB4P16144 1822 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 A0A0G2JLW4 131 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 ERVV-2B6SEH9 535 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 KCNA3P22001 575 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 KCNA4P22459 653 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 TGFB2P61812 414 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 ARHGEF1Q92888 912 aaKnown RBP8.5□□□□□ -1.05
VRK3-220ENST00000600259 PXDNLA1KZ92 1463 aa8.5□□□□□ -1.05
VRK3-220ENST00000600259 RPS6KA4O75676 772 aa8.49□□□□□ -1.05
VRK3-220ENST00000600259 GYS1P13807 737 aa8.49□□□□□ -1.05
VRK3-220ENST00000600259 TRAPPC3LQ5T215 181 aa8.49□□□□□ -1.05
VRK3-220ENST00000600259 NLGN1Q8N2Q7 840 aa8.49□□□□□ -1.05
VRK3-220ENST00000600259 DPEP1P16444 411 aa8.48□□□□□ -1.05
VRK3-220ENST00000600259 RTCBQ9Y3I0 505 aaKnown RBP8.48□□□□□ -1.05
VRK3-220ENST00000600259 PLEKHG2Q9H7P9 1386 aa8.48□□□□□ -1.05
VRK3-220ENST00000600259 CICQ96RK0 1608 aaPredicted RBP8.47□□□□□ -1.05
VRK3-220ENST00000600259 DCAF5Q96JK2 942 aa8.47□□□□□ -1.05
VRK3-220ENST00000600259 CNTNAP4Q9C0A0 1308 aa8.47□□□□□ -1.05
VRK3-220ENST00000600259 KDM6AO15550 1401 aaPredicted RBP8.46□□□□□ -1.05
VRK3-220ENST00000600259 C10orf71Q711Q0 1435 aa8.46□□□□□ -1.05
VRK3-220ENST00000600259 KIAA1551Q9HCM1 1747 aa8.46□□□□□ -1.05
VRK3-220ENST00000600259 ANKRD26Q9UPS8 1709 aa8.46□□□□□ -1.05
VRK3-220ENST00000600259 KIF20BQ96Q89 1820 aa8.46□□□□□ -1.06
VRK3-220ENST00000600259 TOMM70O94826 608 aa8.46□□□□□ -1.06
VRK3-220ENST00000600259 TNNT2P45379 298 aaPredicted RBP8.46□□□□□ -1.06
VRK3-220ENST00000600259 ARHGAP27Q6ZUM4 889 aa8.46□□□□□ -1.06
VRK3-220ENST00000600259 RBM42Q9BTD8 480 aaKnown RBP8.46□□□□□ -1.06
VRK3-220ENST00000600259 NMRK2Q9NPI5 230 aa8.46□□□□□ -1.06
VRK3-220ENST00000600259 TIMELESSQ9UNS1 1208 aa8.46□□□□□ -1.06
VRK3-220ENST00000600259 BCS1LQ9Y276 419 aa8.46□□□□□ -1.06
VRK3-220ENST00000600259 HSP90AB1P08238 724 aaKnown RBP8.45□□□□□ -1.06
VRK3-220ENST00000600259 TM4SF1P30408 202 aa8.45□□□□□ -1.06
VRK3-220ENST00000600259 DDR1Q08345 913 aa8.45□□□□□ -1.06
VRK3-220ENST00000600259 FKBP8Q14318 412 aa8.45□□□□□ -1.06
VRK3-220ENST00000600259 PLEKHO1Q53GL0 409 aaPredicted RBP8.45□□□□□ -1.06
VRK3-220ENST00000600259 INTS5Q6P9B9 1019 aaKnown RBP8.45□□□□□ -1.06
VRK3-220ENST00000600259 AEBP1Q8IUX7 1158 aa8.45□□□□□ -1.06
VRK3-220ENST00000600259 CCDC87Q9NVE4 849 aa8.45□□□□□ -1.06
VRK3-220ENST00000600259 FCHSD2O94868 740 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 RFC4P35249 363 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 CRKLP46109 303 aaKnown RBP8.44□□□□□ -1.06
VRK3-220ENST00000600259 APLP1P51693 650 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 CABP4P57796 275 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 AMOTQ4VCS5 1084 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 ZNF530Q6P9A1 599 aaPredicted RBP8.44□□□□□ -1.06
VRK3-220ENST00000600259 NFATC2IPQ8NCF5 419 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 PANK3Q9H999 370 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 SRP68Q9UHB9 627 aaKnown RBP8.44□□□□□ -1.06
VRK3-220ENST00000600259 PARP3Q9Y6F1 533 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 KIF13BQ9NQT8 1826 aa8.44□□□□□ -1.06
VRK3-220ENST00000600259 ZNF831Q5JPB2 1677 aa8.43□□□□□ -1.06
VRK3-220ENST00000600259 MYH14Q7Z406 1995 aaKnown RBP8.43□□□□□ -1.06
VRK3-220ENST00000600259 PTCD1O75127 700 aaKnown RBP8.43□□□□□ -1.06
VRK3-220ENST00000600259 IL13P35225 146 aa8.43□□□□□ -1.06
VRK3-220ENST00000600259 MTHFSP49914 203 aa8.43□□□□□ -1.06
VRK3-220ENST00000600259 NCBP3Q53F19 620 aaKnown RBP8.43□□□□□ -1.06
VRK3-220ENST00000600259 C9orf131Q5VYM1 1079 aa8.43□□□□□ -1.06
VRK3-220ENST00000600259 CNKSR2Q8WXI2 1034 aa8.43□□□□□ -1.06
VRK3-220ENST00000600259 PIM2Q9P1W9 311 aa8.43□□□□□ -1.06
VRK3-220ENST00000600259 USP42Q9H9J4 1324 aaKnown RBP8.43□□□□□ -1.06
VRK3-220ENST00000600259 POLRMTO00411 1230 aaKnown RBP8.42□□□□□ -1.06
VRK3-220ENST00000600259 CHRNA5P30532 468 aa8.42□□□□□ -1.06
VRK3-220ENST00000600259 TRIM26Q12899 539 aaPredicted RBP8.42□□□□□ -1.06
VRK3-220ENST00000600259 RBM46Q8TBY0 533 aaKnown RBP8.42□□□□□ -1.06
VRK3-220ENST00000600259 N4BP2Q86UW6 1770 aaPredicted RBP8.41□□□□□ -1.06
VRK3-220ENST00000600259 C4AP0C0L4 1744 aa8.41□□□□□ -1.06
VRK3-220ENST00000600259 HSPA5P11021 654 aaKnown RBP8.41□□□□□ -1.06
VRK3-220ENST00000600259 PRELPP51888 382 aa8.41□□□□□ -1.06
VRK3-220ENST00000600259 HTRA3P83110 453 aa8.41□□□□□ -1.06
VRK3-220ENST00000600259 SULT6B1Q6IMI4 303 aa8.41□□□□□ -1.06
VRK3-220ENST00000600259 JMYQ8N9B5 988 aa8.41□□□□□ -1.06
VRK3-220ENST00000600259 BCL2L12Q9HB09 334 aa8.41□□□□□ -1.06
VRK3-220ENST00000600259 LGR6Q9HBX8 967 aa8.41□□□□□ -1.06
VRK3-220ENST00000600259 CYP19A1P11511 503 aaPredicted RBP8.4□□□□□ -1.06
VRK3-220ENST00000600259 FSTL1Q12841 308 aa8.4□□□□□ -1.06
VRK3-220ENST00000600259 DALRD3Q5D0E6 543 aaKnown RBP8.4□□□□□ -1.06
VRK3-220ENST00000600259 DNAJC10Q8IXB1 793 aa8.4□□□□□ -1.06
VRK3-220ENST00000600259 POLR3GLQ9BT43 218 aa8.4□□□□□ -1.06
VRK3-220ENST00000600259 COL5A3P25940 1745 aaPredicted RBP8.4□□□□□ -1.07
VRK3-220ENST00000600259 SOS1Q07889 1333 aaPredicted RBP8.39□□□□□ -1.07
VRK3-220ENST00000600259 AKAP4Q5JQC9 854 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 C1orf141Q5JVX7 400 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 USPL1Q5W0Q7 1092 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 MORC1Q86VD1 984 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 KLRG1Q96E93 195 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 SLC52A2Q9HAB3 445 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 RRAGCQ9HB90 399 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 RNF181Q9P0P0 153 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 ADAMTS7Q9UKP4 1686 aa8.39□□□□□ -1.07
VRK3-220ENST00000600259 BRCA1P38398 1863 aaKnown RBP8.38□□□□□ -1.07
VRK3-220ENST00000600259 CLSPNQ9HAW4 1339 aa8.38□□□□□ -1.07
VRK3-220ENST00000600259 RNMTO43148 476 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms