RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 BRPF1P55201 1214 aaPredicted RBP19.41■□□□□ 0.7
VRK3-218ENST00000600031 PANK1Q8TE04 598 aa19.41■□□□□ 0.7
VRK3-218ENST00000600031 DCAF5Q96JK2 942 aa19.41■□□□□ 0.7
VRK3-218ENST00000600031 SIPA1L3O60292 1781 aaPredicted RBP19.41■□□□□ 0.7
VRK3-218ENST00000600031 KCNQ3O43525 872 aa19.4■□□□□ 0.7
VRK3-218ENST00000600031 ZKSCAN2Q63HK3 967 aa19.4■□□□□ 0.7
VRK3-218ENST00000600031 KDM3BQ7LBC6 1761 aa19.4■□□□□ 0.7
VRK3-218ENST00000600031 SHANK3Q9BYB0 1731 aa19.4■□□□□ 0.7
VRK3-218ENST00000600031 DISP2A7MBM2 1401 aa19.4■□□□□ 0.7
VRK3-218ENST00000600031 SPATA31A6Q5VVP1 1343 aa19.4■□□□□ 0.7
VRK3-218ENST00000600031 HSP90AB1P08238 724 aaKnown RBP19.4■□□□□ 0.7
VRK3-218ENST00000600031 NWD2Q9ULI1 1742 aa19.4■□□□□ 0.7
VRK3-218ENST00000600031 RLBP1P12271 317 aa19.39■□□□□ 0.69
VRK3-218ENST00000600031 C8orf37Q96NL8 207 aa19.39■□□□□ 0.69
VRK3-218ENST00000600031 KIF16BQ96L93 1317 aa19.39■□□□□ 0.69
VRK3-218ENST00000600031 LRP6O75581 1613 aa19.39■□□□□ 0.69
VRK3-218ENST00000600031 DDX54Q8TDD1 881 aaKnown RBP19.39■□□□□ 0.69
VRK3-218ENST00000600031 CLUAP1Q96AJ1 413 aa19.39■□□□□ 0.69
VRK3-218ENST00000600031 SLC52A2Q9HAB3 445 aa19.39■□□□□ 0.69
VRK3-218ENST00000600031 EIF4A1P60842 406 aaKnown RBP19.38■□□□□ 0.69
VRK3-218ENST00000600031 SPATA31A1Q5TZJ5 1347 aa19.38■□□□□ 0.69
VRK3-218ENST00000600031 TRIM27P14373 513 aa19.37■□□□□ 0.69
VRK3-218ENST00000600031 ATF7IPQ6VMQ6 1270 aa19.37■□□□□ 0.69
VRK3-218ENST00000600031 NFATC2IPQ8NCF5 419 aa19.37■□□□□ 0.69
VRK3-218ENST00000600031 NGLY1Q96IV0 654 aa19.37■□□□□ 0.69
VRK3-218ENST00000600031 COG6Q9Y2V7 657 aa19.37■□□□□ 0.69
VRK3-218ENST00000600031 NKX1-1Q15270 411 aaPredicted RBP19.36■□□□□ 0.69
VRK3-218ENST00000600031 IPO8O15397 1037 aaKnown RBP19.36■□□□□ 0.69
VRK3-218ENST00000600031 UNC5CLQ8IV45 518 aa19.36■□□□□ 0.69
VRK3-218ENST00000600031 DZIP1LQ8IYY4 767 aaKnown RBP19.36■□□□□ 0.69
VRK3-218ENST00000600031 MRC1P22897 1456 aa19.36■□□□□ 0.69
VRK3-218ENST00000600031 SPATA31A5Q5VU36 1347 aa19.35■□□□□ 0.69
VRK3-218ENST00000600031 SPATA31A7Q8IWB4 1347 aa19.35■□□□□ 0.69
VRK3-218ENST00000600031 WNK3Q9BYP7 1800 aa19.34■□□□□ 0.69
VRK3-218ENST00000600031 BCL9LQ86UU0 1499 aa19.34■□□□□ 0.69
VRK3-218ENST00000600031 THRAP3Q9Y2W1 955 aaKnown RBP19.34■□□□□ 0.69
VRK3-218ENST00000600031 SOS1Q07889 1333 aaPredicted RBP19.34■□□□□ 0.69
VRK3-218ENST00000600031 CABP4P57796 275 aa19.33■□□□□ 0.69
VRK3-218ENST00000600031 SLC39A6Q13433 755 aa19.33■□□□□ 0.69
VRK3-218ENST00000600031 FTSJ3Q8IY81 847 aaKnown RBP19.33■□□□□ 0.69
VRK3-218ENST00000600031 FNBP4Q8N3X1 1017 aaPredicted RBP19.33■□□□□ 0.69
VRK3-218ENST00000600031 CCDC9Q9Y3X0 531 aaKnown RBP19.33■□□□□ 0.69
VRK3-218ENST00000600031 ARHGAP45Q92619 1136 aa19.33■□□□□ 0.68
VRK3-218ENST00000600031 SLC4A2P04920 1241 aa19.32■□□□□ 0.68
VRK3-218ENST00000600031 MS4A1P11836 297 aa19.32■□□□□ 0.68
VRK3-218ENST00000600031 ZNF790Q6PG37 636 aa19.32■□□□□ 0.68
VRK3-218ENST00000600031 NECTIN2Q92692 538 aa19.32■□□□□ 0.68
VRK3-218ENST00000600031 NOP58Q9Y2X3 529 aaKnown RBP19.32■□□□□ 0.68
VRK3-218ENST00000600031 EXOC5O00471 708 aa19.31■□□□□ 0.68
VRK3-218ENST00000600031 HEG1Q9ULI3 1381 aa19.31■□□□□ 0.68
VRK3-218ENST00000600031 ERVV-2B6SEH9 535 aa19.31■□□□□ 0.68
VRK3-218ENST00000600031 CCDC30Q5VVM6 783 aa19.31■□□□□ 0.68
VRK3-218ENST00000600031 ANP32AP39687 249 aaKnown RBP19.3■□□□□ 0.68
VRK3-218ENST00000600031 CDCA7Q9BWT1 371 aaPredicted RBP19.3■□□□□ 0.68
VRK3-218ENST00000600031 HOXB7P09629 217 aa19.3■□□□□ 0.68
VRK3-218ENST00000600031 MVPQ14764 893 aaKnown RBP19.3■□□□□ 0.68
VRK3-218ENST00000600031 VPS72Q15906 364 aa19.3■□□□□ 0.68
VRK3-218ENST00000600031 TMEM57Q8N5G2 664 aa19.3■□□□□ 0.68
VRK3-218ENST00000600031 GIGYF1O75420 1035 aaPredicted RBP19.29■□□□□ 0.68
VRK3-218ENST00000600031 HDGFL1Q5TGJ6 251 aa19.29■□□□□ 0.68
VRK3-218ENST00000600031 EIF2S2P20042 333 aaKnown RBP19.28■□□□□ 0.68
VRK3-218ENST00000600031 MEX3CQ5U5Q3 659 aaKnown RBP19.28■□□□□ 0.68
VRK3-218ENST00000600031 BARGINQ6ZT62 677 aa19.28■□□□□ 0.68
VRK3-218ENST00000600031 G2E3Q7L622 706 aa19.28■□□□□ 0.68
VRK3-218ENST00000600031 STK31Q9BXU1 1019 aa19.28■□□□□ 0.68
VRK3-218ENST00000600031 USP21Q9UK80 565 aa19.28■□□□□ 0.68
VRK3-218ENST00000600031 TNS2Q63HR2 1409 aa19.28■□□□□ 0.68
VRK3-218ENST00000600031 TOGARAM1Q9Y4F4 1720 aa19.28■□□□□ 0.68
VRK3-218ENST00000600031 PRAMEF22A3QJZ6 481 aa19.28■□□□□ 0.68
VRK3-218ENST00000600031 API5Q9BZZ5 524 aaKnown RBP19.27■□□□□ 0.68
VRK3-218ENST00000600031 ABCC4O15439 1325 aa19.26■□□□□ 0.67
VRK3-218ENST00000600031 DDB1Q16531 1140 aa19.26■□□□□ 0.67
VRK3-218ENST00000600031 ITPRIPQ8IWB1 547 aa19.26■□□□□ 0.67
VRK3-218ENST00000600031 ZNF496Q96IT1 587 aaPredicted RBP19.26■□□□□ 0.67
VRK3-218ENST00000600031 RGS12O14924 1447 aa19.26■□□□□ 0.67
VRK3-218ENST00000600031 PTPRCP08575 1304 aa19.25■□□□□ 0.67
VRK3-218ENST00000600031 TTC5Q8N0Z6 440 aa19.25■□□□□ 0.67
VRK3-218ENST00000600031 IPO9Q96P70 1041 aaKnown RBP19.25■□□□□ 0.67
VRK3-218ENST00000600031 CACNA1FO60840 1977 aa19.25■□□□□ 0.67
VRK3-218ENST00000600031 FAM98CQ17RN3 349 aaKnown RBP19.24■□□□□ 0.67
VRK3-218ENST00000600031 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.24■□□□□ 0.67
VRK3-218ENST00000600031 CHPF2Q9P2E5 772 aa19.23■□□□□ 0.67
VRK3-218ENST00000600031 DDX19BQ9UMR2 479 aa19.23■□□□□ 0.67
VRK3-218ENST00000600031 AFF2P51816 1311 aa19.23■□□□□ 0.67
VRK3-218ENST00000600031 FLIIQ13045 1269 aa19.22■□□□□ 0.67
VRK3-218ENST00000600031 FMNL2Q96PY5 1086 aa19.22■□□□□ 0.67
VRK3-218ENST00000600031 TMOD3Q9NYL9 352 aa19.22■□□□□ 0.67
VRK3-218ENST00000600031 C5P01031 1676 aa19.22■□□□□ 0.67
VRK3-218ENST00000600031 CHMP4AQ9BY43 222 aa19.22■□□□□ 0.67
VRK3-218ENST00000600031 MARCH10Q8NA82 808 aaPredicted RBP19.21■□□□□ 0.67
VRK3-218ENST00000600031 PIGBQ92521 554 aa19.21■□□□□ 0.67
VRK3-218ENST00000600031 PHAXQ9H814 394 aaKnown RBP19.21■□□□□ 0.67
VRK3-218ENST00000600031 ITGB4P16144 1822 aa19.21■□□□□ 0.67
VRK3-218ENST00000600031 PAPPAQ13219 1627 aa19.21■□□□□ 0.67
VRK3-218ENST00000600031 ANXA1P04083 346 aa19.21■□□□□ 0.67
VRK3-218ENST00000600031 AAMPQ13685 434 aa19.21■□□□□ 0.67
VRK3-218ENST00000600031 SNRPA1P09661 255 aaKnown RBP19.2■□□□□ 0.66
VRK3-218ENST00000600031 KAT6BQ8WYB5 2073 aa19.2■□□□□ 0.66
VRK3-218ENST00000600031 GLI3P10071 1580 aa19.2■□□□□ 0.66
VRK3-218ENST00000600031 F6X3S4 739 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms