RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 LINC00116Q8NCU8 138 aa25.5■■□□□ 1.67
PNKP-213ENST00000599543 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.49■■□□□ 1.67
PNKP-213ENST00000599543 ATG3Q9NT62 314 aa25.49■■□□□ 1.67
PNKP-213ENST00000599543 SSFA2P28290 1259 aa25.48■■□□□ 1.67
PNKP-213ENST00000599543 AMIGO3Q86WK7 504 aa25.48■■□□□ 1.67
PNKP-213ENST00000599543 ZNF831Q5JPB2 1677 aa25.48■■□□□ 1.67
PNKP-213ENST00000599543 KDM6AO15550 1401 aaPredicted RBP25.47■■□□□ 1.67
PNKP-213ENST00000599543 ITPK1Q13572 414 aa25.47■■□□□ 1.67
PNKP-213ENST00000599543 C1orf141Q5JVX7 400 aa25.47■■□□□ 1.67
PNKP-213ENST00000599543 SULT6B1Q6IMI4 303 aa25.47■■□□□ 1.67
PNKP-213ENST00000599543 KDRP35968 1356 aa25.46■■□□□ 1.67
PNKP-213ENST00000599543 GNPATO15228 680 aa25.46■■□□□ 1.67
PNKP-213ENST00000599543 IL13P35225 146 aa25.45■■□□□ 1.66
PNKP-213ENST00000599543 ZNF784Q8NCA9 323 aaPredicted RBP25.45■■□□□ 1.66
PNKP-213ENST00000599543 COL5A3P25940 1745 aaPredicted RBP25.45■■□□□ 1.66
PNKP-213ENST00000599543 MTHFSP49914 203 aa25.44■■□□□ 1.66
PNKP-213ENST00000599543 CABP4P57796 275 aa25.44■■□□□ 1.66
PNKP-213ENST00000599543 SMIM5Q71RC9 77 aa25.44■■□□□ 1.66
PNKP-213ENST00000599543 RBM42Q9BTD8 480 aaKnown RBP25.43■■□□□ 1.66
PNKP-213ENST00000599543 SCN11AQ9UI33 1791 aa25.43■■□□□ 1.66
PNKP-213ENST00000599543 CD2APQ9Y5K6 639 aa25.42■■□□□ 1.66
PNKP-213ENST00000599543 VIRMAQ69YN4 1812 aaKnown RBP25.4■■□□□ 1.66
PNKP-213ENST00000599543 CC2D1BQ5T0F9 858 aaKnown RBP25.4■■□□□ 1.66
PNKP-213ENST00000599543 PER1O15534 1290 aaPredicted RBP25.39■■□□□ 1.66
PNKP-213ENST00000599543 GRIN3BO60391 1043 aa25.38■■□□□ 1.65
PNKP-213ENST00000599543 YBX3P16989 372 aaKnown RBP eCLIP25.38■■□□□ 1.65
PNKP-213ENST00000599543 RTCBQ9Y3I0 505 aaKnown RBP25.38■■□□□ 1.65
PNKP-213ENST00000599543 SLC4A9Q96Q91 983 aa25.37■■□□□ 1.65
PNKP-213ENST00000599543 MYH14Q7Z406 1995 aaKnown RBP25.36■■□□□ 1.65
PNKP-213ENST00000599543 TRAPPC3LQ5T215 181 aa25.35■■□□□ 1.65
PNKP-213ENST00000599543 NFATC2IPQ8NCF5 419 aa25.35■■□□□ 1.65
PNKP-213ENST00000599543 CNTNAP4Q9C0A0 1308 aa25.35■■□□□ 1.65
PNKP-213ENST00000599543 PTCD1O75127 700 aaKnown RBP25.34■■□□□ 1.65
PNKP-213ENST00000599543 HMOX1P09601 288 aa25.34■■□□□ 1.65
PNKP-213ENST00000599543 AKAP4Q5JQC9 854 aa25.34■■□□□ 1.65
PNKP-213ENST00000599543 C4AP0C0L4 1744 aa25.34■■□□□ 1.65
PNKP-213ENST00000599543 DIAPH1O60610 1272 aaKnown RBP25.33■■□□□ 1.65
PNKP-213ENST00000599543 RC3H1Q5TC82 1133 aaKnown RBP25.33■■□□□ 1.65
PNKP-213ENST00000599543 CICQ96RK0 1608 aaPredicted RBP25.33■■□□□ 1.65
PNKP-213ENST00000599543 NPC1L1Q9UHC9 1359 aa25.32■■□□□ 1.64
PNKP-213ENST00000599543 TJP1Q07157 1748 aa25.32■■□□□ 1.64
PNKP-213ENST00000599543 ADRA2BP18089 450 aa25.32■■□□□ 1.64
PNKP-213ENST00000599543 CNGB1Q14028 1251 aaPredicted RBP25.31■■□□□ 1.64
PNKP-213ENST00000599543 MMP10P09238 476 aa25.3■■□□□ 1.64
PNKP-213ENST00000599543 MRC1P22897 1456 aa25.29■■□□□ 1.64
PNKP-213ENST00000599543 KIF13BQ9NQT8 1826 aa25.29■■□□□ 1.64
PNKP-213ENST00000599543 RPS6KA4O75676 772 aa25.28■■□□□ 1.64
PNKP-213ENST00000599543 RFC4P35249 363 aa25.28■■□□□ 1.64
PNKP-213ENST00000599543 NLGN1Q8N2Q7 840 aa25.28■■□□□ 1.64
PNKP-213ENST00000599543 ARHGEF1Q92888 912 aaKnown RBP25.28■■□□□ 1.64
PNKP-213ENST00000599543 SLC52A2Q9HAB3 445 aa25.28■■□□□ 1.64
PNKP-213ENST00000599543 COL3A1P02461 1466 aaPredicted RBP25.28■■□□□ 1.64
PNKP-213ENST00000599543 ADAMTS7Q9UKP4 1686 aa25.26■■□□□ 1.63
PNKP-213ENST00000599543 CRKLP46109 303 aaKnown RBP25.26■■□□□ 1.63
PNKP-213ENST00000599543 LGR6Q9HBX8 967 aa25.26■■□□□ 1.63
PNKP-213ENST00000599543 RNMTO43148 476 aaKnown RBP25.25■■□□□ 1.63
PNKP-213ENST00000599543 WWC3Q9ULE0 1092 aa25.25■■□□□ 1.63
PNKP-213ENST00000599543 GYS1P13807 737 aa25.24■■□□□ 1.63
PNKP-213ENST00000599543 MTHFSDQ2M296 383 aaKnown RBP25.24■■□□□ 1.63
PNKP-213ENST00000599543 N4BP2Q86UW6 1770 aaPredicted RBP25.23■■□□□ 1.63
PNKP-213ENST00000599543 U2SURPO15042 1029 aaKnown RBP25.23■■□□□ 1.63
PNKP-213ENST00000599543 KIAA1551Q9HCM1 1747 aa25.22■■□□□ 1.63
PNKP-213ENST00000599543 C10orf71Q711Q0 1435 aa25.2■■□□□ 1.63
PNKP-213ENST00000599543 PARP3Q9Y6F1 533 aa25.2■■□□□ 1.62
PNKP-213ENST00000599543 KCPQ6ZWJ8 1503 aa25.2■■□□□ 1.62
PNKP-213ENST00000599543 UBR2Q8IWV8 1755 aa25.2■■□□□ 1.62
PNKP-213ENST00000599543 PXDNLA1KZ92 1463 aa25.2■■□□□ 1.62
PNKP-213ENST00000599543 GIGYF1O75420 1035 aaPredicted RBP25.19■■□□□ 1.62
PNKP-213ENST00000599543 SLC39A6Q13433 755 aa25.19■■□□□ 1.62
PNKP-213ENST00000599543 CCDC87Q9NVE4 849 aa25.19■■□□□ 1.62
PNKP-213ENST00000599543 DNAJC10Q8IXB1 793 aa25.18■■□□□ 1.62
PNKP-213ENST00000599543 USP42Q9H9J4 1324 aaKnown RBP25.17■■□□□ 1.62
PNKP-213ENST00000599543 C1QTNF8P60827 252 aa25.17■■□□□ 1.62
PNKP-213ENST00000599543 TGFB2P61812 414 aa25.17■■□□□ 1.62
PNKP-213ENST00000599543 INTS5Q6P9B9 1019 aaKnown RBP25.17■■□□□ 1.62
PNKP-213ENST00000599543 ATP10DQ9P241 1426 aa25.17■■□□□ 1.62
PNKP-213ENST00000599543 ZEB1P37275 1124 aaPredicted RBP25.16■■□□□ 1.62
PNKP-213ENST00000599543 CFAP53Q96M91 514 aa25.16■■□□□ 1.62
PNKP-213ENST00000599543 SRP68Q9UHB9 627 aaKnown RBP25.16■■□□□ 1.62
PNKP-213ENST00000599543 BRCA1P38398 1863 aaKnown RBP25.15■■□□□ 1.62
PNKP-213ENST00000599543 GAS2L2Q8NHY3 880 aa25.15■■□□□ 1.62
PNKP-213ENST00000599543 SIPA1L3O60292 1781 aaPredicted RBP25.14■■□□□ 1.62
PNKP-213ENST00000599543 GNAT3A8MTJ3 354 aa25.13■■□□□ 1.61
PNKP-213ENST00000599543 CYP19A1P11511 503 aaPredicted RBP25.13■■□□□ 1.61
PNKP-213ENST00000599543 TTC5Q8N0Z6 440 aa25.13■■□□□ 1.61
PNKP-213ENST00000599543 ADCY9O60503 1353 aa25.13■■□□□ 1.61
PNKP-213ENST00000599543 SOS1Q07889 1333 aaPredicted RBP25.12■■□□□ 1.61
PNKP-213ENST00000599543 A0A0G2JLW4 131 aa25.12■■□□□ 1.61
PNKP-213ENST00000599543 ZPR1O75312 459 aa25.12■■□□□ 1.61
PNKP-213ENST00000599543 FKBP8Q14318 412 aa25.12■■□□□ 1.61
PNKP-213ENST00000599543 VSIG10Q8N0Z9 540 aa25.12■■□□□ 1.61
PNKP-213ENST00000599543 TEFQ10587 303 aa25.11■■□□□ 1.61
PNKP-213ENST00000599543 BCS1LQ9Y276 419 aa25.11■■□□□ 1.61
PNKP-213ENST00000599543 COL15A1P39059 1388 aa25.1■■□□□ 1.61
PNKP-213ENST00000599543 SENP3-EIF4A1A0A087X0R7 540 aa25.09■■□□□ 1.61
PNKP-213ENST00000599543 DPEP1P16444 411 aa25.09■■□□□ 1.61
PNKP-213ENST00000599543 NUDCQ9Y266 331 aa25.09■■□□□ 1.61
PNKP-213ENST00000599543 ZBTB1Q9Y2K1 713 aa25.09■■□□□ 1.61
PNKP-213ENST00000599543 ARFGEF1Q9Y6D6 1849 aa25.09■■□□□ 1.61
PNKP-213ENST00000599543 PRKAR2BP31323 418 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms