RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 NLGN1Q8N2Q7 840 aa14.16□□□□□ -0.14
TRIM28-210ENST00000597618 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.16□□□□□ -0.14
TRIM28-210ENST00000597618 ASAP1Q9ULH1 1129 aa14.16□□□□□ -0.14
TRIM28-210ENST00000597618 PLEKHG2Q9H7P9 1386 aa14.16□□□□□ -0.14
TRIM28-210ENST00000597618 KIAA1551Q9HCM1 1747 aa14.15□□□□□ -0.14
TRIM28-210ENST00000597618 A0A0G2JLW4 131 aa14.15□□□□□ -0.14
TRIM28-210ENST00000597618 TMF1P82094 1093 aa14.15□□□□□ -0.14
TRIM28-210ENST00000597618 C16orf71Q8IYS4 520 aaPredicted RBP14.15□□□□□ -0.14
TRIM28-210ENST00000597618 CCDC87Q9NVE4 849 aa14.15□□□□□ -0.14
TRIM28-210ENST00000597618 RTCBQ9Y3I0 505 aaKnown RBP14.15□□□□□ -0.14
TRIM28-210ENST00000597618 EMILIN1Q9Y6C2 1016 aa14.15□□□□□ -0.14
TRIM28-210ENST00000597618 KIF20BQ96Q89 1820 aa14.15□□□□□ -0.14
TRIM28-210ENST00000597618 KDRP35968 1356 aa14.14□□□□□ -0.15
TRIM28-210ENST00000597618 FCHSD2O94868 740 aa14.14□□□□□ -0.15
TRIM28-210ENST00000597618 ADRA2BP18089 450 aa14.14□□□□□ -0.15
TRIM28-210ENST00000597618 FSTL1Q12841 308 aa14.14□□□□□ -0.15
TRIM28-210ENST00000597618 TRAPPC3LQ5T215 181 aa14.14□□□□□ -0.15
TRIM28-210ENST00000597618 KLRG1Q96E93 195 aa14.14□□□□□ -0.15
TRIM28-210ENST00000597618 WDR90Q96KV7 1748 aa14.14□□□□□ -0.15
TRIM28-210ENST00000597618 PHKG2P15735 406 aa14.13□□□□□ -0.15
TRIM28-210ENST00000597618 DPEP1P16444 411 aa14.13□□□□□ -0.15
TRIM28-210ENST00000597618 IFNL2Q8IZJ0 200 aa14.13□□□□□ -0.15
TRIM28-210ENST00000597618 ATG3Q9NT62 314 aa14.13□□□□□ -0.15
TRIM28-210ENST00000597618 N4BP2Q86UW6 1770 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-210ENST00000597618 PPM1GO15355 546 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-210ENST00000597618 CDCA8Q53HL2 280 aa14.12□□□□□ -0.15
TRIM28-210ENST00000597618 C9orf131Q5VYM1 1079 aa14.12□□□□□ -0.15
TRIM28-210ENST00000597618 JMYQ8N9B5 988 aa14.12□□□□□ -0.15
TRIM28-210ENST00000597618 PARP3Q9Y6F1 533 aa14.12□□□□□ -0.15
TRIM28-210ENST00000597618 C4AP0C0L4 1744 aa14.12□□□□□ -0.15
TRIM28-210ENST00000597618 KDM2BQ8NHM5 1336 aa14.12□□□□□ -0.15
TRIM28-210ENST00000597618 RC3H1Q5TC82 1133 aaKnown RBP14.11□□□□□ -0.15
TRIM28-210ENST00000597618 EYA1Q99502 592 aa14.11□□□□□ -0.15
TRIM28-210ENST00000597618 WASHC2AQ641Q2 1341 aa14.11□□□□□ -0.15
TRIM28-210ENST00000597618 GYS1P13807 737 aa14.1□□□□□ -0.15
TRIM28-210ENST00000597618 RFC4P35249 363 aa14.1□□□□□ -0.15
TRIM28-210ENST00000597618 COL13A1Q5TAT6 717 aaPredicted RBP14.1□□□□□ -0.15
TRIM28-210ENST00000597618 ARHGEF1Q92888 912 aaKnown RBP14.1□□□□□ -0.15
TRIM28-210ENST00000597618 CNTNAP4Q9C0A0 1308 aa14.1□□□□□ -0.15
TRIM28-210ENST00000597618 ANKRD26Q9UPS8 1709 aa14.1□□□□□ -0.15
TRIM28-210ENST00000597618 HTRA3P83110 453 aa14.09□□□□□ -0.15
TRIM28-210ENST00000597618 PIM2Q9P1W9 311 aa14.09□□□□□ -0.15
TRIM28-210ENST00000597618 ZNF831Q5JPB2 1677 aa14.09□□□□□ -0.15
TRIM28-210ENST00000597618 ERVV-2B6SEH9 535 aa14.08□□□□□ -0.16
TRIM28-210ENST00000597618 KCNA3P22001 575 aa14.08□□□□□ -0.16
TRIM28-210ENST00000597618 DALRD3Q5D0E6 543 aaKnown RBP14.08□□□□□ -0.16
TRIM28-210ENST00000597618 DCAF5Q96JK2 942 aa14.08□□□□□ -0.16
TRIM28-210ENST00000597618 SLC4A9Q96Q91 983 aa14.08□□□□□ -0.16
TRIM28-210ENST00000597618 RBM42Q9BTD8 480 aaKnown RBP14.08□□□□□ -0.16
TRIM28-210ENST00000597618 KCPQ6ZWJ8 1503 aa14.08□□□□□ -0.16
TRIM28-210ENST00000597618 BRCA1P38398 1863 aaKnown RBP14.08□□□□□ -0.16
TRIM28-210ENST00000597618 RPS6KA4O75676 772 aa14.07□□□□□ -0.16
TRIM28-210ENST00000597618 HSP90AB1P08238 724 aaKnown RBP14.07□□□□□ -0.16
TRIM28-210ENST00000597618 TNS4Q8IZW8 715 aa14.07□□□□□ -0.16
TRIM28-210ENST00000597618 CARD14Q9BXL6 1004 aa14.07□□□□□ -0.16
TRIM28-210ENST00000597618 RNF181Q9P0P0 153 aa14.07□□□□□ -0.16
TRIM28-210ENST00000597618 ARFGEF1Q9Y6D6 1849 aa14.06□□□□□ -0.16
TRIM28-210ENST00000597618 CAPN15O75808 1086 aa14.06□□□□□ -0.16
TRIM28-210ENST00000597618 SMC1BQ8NDV3 1235 aa14.06□□□□□ -0.16
TRIM28-210ENST00000597618 COL5A3P25940 1745 aaPredicted RBP14.06□□□□□ -0.16
TRIM28-210ENST00000597618 ZC3H4Q9UPT8 1303 aaKnown RBP14.05□□□□□ -0.16
TRIM28-210ENST00000597618 TNRC6CQ9HCJ0 1690 aaKnown RBP14.04□□□□□ -0.16
TRIM28-210ENST00000597618 PRELPP51888 382 aa14.04□□□□□ -0.16
TRIM28-210ENST00000597618 RRAGCQ9HB90 399 aa14.04□□□□□ -0.16
TRIM28-210ENST00000597618 POLKQ9UBT6 870 aa14.04□□□□□ -0.16
TRIM28-210ENST00000597618 EIF4A2Q14240 407 aaKnown RBP14.03□□□□□ -0.16
TRIM28-210ENST00000597618 USP42Q9H9J4 1324 aaKnown RBP14.03□□□□□ -0.16
TRIM28-210ENST00000597618 CABP4P57796 275 aa14.02□□□□□ -0.17
TRIM28-210ENST00000597618 DDR1Q08345 913 aa14.02□□□□□ -0.17
TRIM28-210ENST00000597618 FKBP8Q14318 412 aa14.02□□□□□ -0.17
TRIM28-210ENST00000597618 KDM6AO15550 1401 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-210ENST00000597618 CHRNA5P30532 468 aa14.01□□□□□ -0.17
TRIM28-210ENST00000597618 CRKLP46109 303 aaKnown RBP14.01□□□□□ -0.17
TRIM28-210ENST00000597618 PLEKHO1Q53GL0 409 aaPredicted RBP14.01□□□□□ -0.17
TRIM28-210ENST00000597618 SRP68Q9UHB9 627 aaKnown RBP14.01□□□□□ -0.17
TRIM28-210ENST00000597618 PTCD1O75127 700 aaKnown RBP14□□□□□ -0.17
TRIM28-210ENST00000597618 AMOTQ4VCS5 1084 aa14□□□□□ -0.17
TRIM28-210ENST00000597618 ZNF530Q6P9A1 599 aaPredicted RBP14□□□□□ -0.17
TRIM28-210ENST00000597618 POLRMTO00411 1230 aaKnown RBP13.99□□□□□ -0.17
TRIM28-210ENST00000597618 MYH14Q7Z406 1995 aaKnown RBP13.99□□□□□ -0.17
TRIM28-210ENST00000597618 HSPA1AP0DMV8 641 aaKnown RBP13.98□□□□□ -0.17
TRIM28-210ENST00000597618 HSPA1BP0DMV9 641 aaKnown RBP13.98□□□□□ -0.17
TRIM28-210ENST00000597618 VEGFAP15692 232 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-210ENST00000597618 LMNB1P20700 586 aa13.98□□□□□ -0.17
TRIM28-210ENST00000597618 MTHFSP49914 203 aa13.98□□□□□ -0.17
TRIM28-210ENST00000597618 C1orf141Q5JVX7 400 aa13.98□□□□□ -0.17
TRIM28-210ENST00000597618 GLTPD2A6NH11 291 aa13.97□□□□□ -0.17
TRIM28-210ENST00000597618 ZPR1O75312 459 aa13.97□□□□□ -0.17
TRIM28-210ENST00000597618 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
TRIM28-210ENST00000597618 RASSF7Q02833 373 aa13.97□□□□□ -0.17
TRIM28-210ENST00000597618 TM4SF1P30408 202 aa13.96□□□□□ -0.17
TRIM28-210ENST00000597618 SBF1O95248 1867 aa13.95□□□□□ -0.18
TRIM28-210ENST00000597618 INTS5Q6P9B9 1019 aaKnown RBP13.95□□□□□ -0.18
TRIM28-210ENST00000597618 NFATC2IPQ8NCF5 419 aa13.95□□□□□ -0.18
TRIM28-210ENST00000597618 TJP1Q07157 1748 aa13.95□□□□□ -0.18
TRIM28-210ENST00000597618 USPL1Q5W0Q7 1092 aa13.94□□□□□ -0.18
TRIM28-210ENST00000597618 SOS1Q07889 1333 aaPredicted RBP13.93□□□□□ -0.18
TRIM28-210ENST00000597618 TTLL6Q8N841 843 aa13.93□□□□□ -0.18
TRIM28-210ENST00000597618 ADAMTS7Q9UKP4 1686 aa13.93□□□□□ -0.18
TRIM28-210ENST00000597618 NFIXQ14938 502 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms