RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 N4BP2Q86UW6 1770 aaPredicted RBP16.19■□□□□ 0.18
SHKBP1-213ENST00000597325 TNRC6CQ9HCJ0 1690 aaKnown RBP16.19■□□□□ 0.18
SHKBP1-213ENST00000597325 PPP2R1AP30153 589 aa16.19■□□□□ 0.18
SHKBP1-213ENST00000597325 SMC1BQ8NDV3 1235 aa16.19■□□□□ 0.18
SHKBP1-213ENST00000597325 CCER2I3L3R5 266 aa16.18■□□□□ 0.18
SHKBP1-213ENST00000597325 BCS1LQ9Y276 419 aa16.18■□□□□ 0.18
SHKBP1-213ENST00000597325 C4BP0C0L5 1744 aa16.18■□□□□ 0.18
SHKBP1-213ENST00000597325 BRCA1P38398 1863 aaKnown RBP16.17■□□□□ 0.18
SHKBP1-213ENST00000597325 C9orf131Q5VYM1 1079 aa16.17■□□□□ 0.18
SHKBP1-213ENST00000597325 ARHGAP27Q6ZUM4 889 aa16.17■□□□□ 0.18
SHKBP1-213ENST00000597325 RRAGCQ9HB90 399 aa16.17■□□□□ 0.18
SHKBP1-213ENST00000597325 SMIM5Q71RC9 77 aa16.16■□□□□ 0.18
SHKBP1-213ENST00000597325 KDM2BQ8NHM5 1336 aa16.16■□□□□ 0.18
SHKBP1-213ENST00000597325 TGFB2P61812 414 aa16.15■□□□□ 0.18
SHKBP1-213ENST00000597325 MRS2Q9HD23 443 aa16.15■□□□□ 0.18
SHKBP1-213ENST00000597325 SMG6Q86US8 1419 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-213ENST00000597325 CFAP53Q96M91 514 aa16.14■□□□□ 0.17
SHKBP1-213ENST00000597325 PRDM10Q9NQV6 1147 aa16.14■□□□□ 0.17
SHKBP1-213ENST00000597325 ARFGEF1Q9Y6D6 1849 aa16.13■□□□□ 0.17
SHKBP1-213ENST00000597325 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-213ENST00000597325 A0A0G2JLW4 131 aa16.13■□□□□ 0.17
SHKBP1-213ENST00000597325 FOXN1O15353 648 aa16.13■□□□□ 0.17
SHKBP1-213ENST00000597325 HMGB2P26583 209 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-213ENST00000597325 FAM208AQ9UK61 1670 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-213ENST00000597325 PPM1GO15355 546 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-213ENST00000597325 MTHFSP49914 203 aa16.12■□□□□ 0.17
SHKBP1-213ENST00000597325 MAP2P11137 1827 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-213ENST00000597325 RRS1Q15050 365 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-213ENST00000597325 RTL1A6NKG5 1358 aa16.11■□□□□ 0.17
SHKBP1-213ENST00000597325 PALLDQ8WX93 1383 aa16.11■□□□□ 0.17
SHKBP1-213ENST00000597325 PHF14O94880 888 aa16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 SSFA2P28290 1259 aa16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 ZCRB1Q8TBF4 217 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 AK7Q96M32 723 aa16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 POLKQ9UBT6 870 aa16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 EMILIN1Q9Y6C2 1016 aa16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 KIF24Q5T7B8 1368 aa16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 SBF1O95248 1867 aa16.1■□□□□ 0.17
SHKBP1-213ENST00000597325 MEGF6O75095 1541 aa16.09■□□□□ 0.17
SHKBP1-213ENST00000597325 FCHSD2O94868 740 aa16.09■□□□□ 0.17
SHKBP1-213ENST00000597325 KCNA3P22001 575 aa16.09■□□□□ 0.17
SHKBP1-213ENST00000597325 AMPHP49418 695 aa16.09■□□□□ 0.17
SHKBP1-213ENST00000597325 MAP3K19Q56UN5 1328 aa16.09■□□□□ 0.17
SHKBP1-213ENST00000597325 FLT4P35916 1363 aa16.09■□□□□ 0.17
SHKBP1-213ENST00000597325 MMP10P09238 476 aa16.08■□□□□ 0.16
SHKBP1-213ENST00000597325 DPEP1P16444 411 aa16.08■□□□□ 0.16
SHKBP1-213ENST00000597325 FBLN1P23142 703 aa16.08■□□□□ 0.16
SHKBP1-213ENST00000597325 RGS19P49795 217 aa16.07■□□□□ 0.16
SHKBP1-213ENST00000597325 CCDC184Q52MB2 194 aa16.07■□□□□ 0.16
SHKBP1-213ENST00000597325 RNF181Q9P0P0 153 aa16.07■□□□□ 0.16
SHKBP1-213ENST00000597325 COL3A1P02461 1466 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-213ENST00000597325 IP6K1Q92551 441 aa16.06■□□□□ 0.16
SHKBP1-213ENST00000597325 ABHD8Q96I13 439 aa16.06■□□□□ 0.16
SHKBP1-213ENST00000597325 MLLT1Q03111 559 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-213ENST00000597325 WDR43Q15061 677 aaKnown RBP eCLIP16.05■□□□□ 0.16
SHKBP1-213ENST00000597325 DCAF5Q96JK2 942 aa16.05■□□□□ 0.16
SHKBP1-213ENST00000597325 RGPD2P0DJD1 1756 aa16.05■□□□□ 0.16
SHKBP1-213ENST00000597325 INSRP06213 1382 aa16.04■□□□□ 0.16
SHKBP1-213ENST00000597325 NUDCQ9Y266 331 aa16.04■□□□□ 0.16
SHKBP1-213ENST00000597325 DIAPH1O60610 1272 aaKnown RBP16.03■□□□□ 0.16
SHKBP1-213ENST00000597325 HOXC9P31274 260 aa16.03■□□□□ 0.16
SHKBP1-213ENST00000597325 CTCFP49711 727 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-213ENST00000597325 LINC00116Q8NCU8 138 aa16.03■□□□□ 0.16
SHKBP1-213ENST00000597325 ZC3H4Q9UPT8 1303 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-213ENST00000597325 VEGFAP15692 232 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-213ENST00000597325 CREBZFQ9NS37 354 aa16.02■□□□□ 0.16
SHKBP1-213ENST00000597325 MKRN1Q9UHC7 482 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-213ENST00000597325 KDM6AO15550 1401 aaPredicted RBP16.02■□□□□ 0.15
SHKBP1-213ENST00000597325 FAM9BQ8IZU0 186 aa16.01■□□□□ 0.15
SHKBP1-213ENST00000597325 LTV1Q96GA3 475 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-213ENST00000597325 C4AP0C0L4 1744 aa16.01■□□□□ 0.15
SHKBP1-213ENST00000597325 ITGB4P16144 1822 aa16.01■□□□□ 0.15
SHKBP1-213ENST00000597325 GLTPD2A6NH11 291 aa16■□□□□ 0.15
SHKBP1-213ENST00000597325 HSP90AB2PQ58FF8 381 aa16■□□□□ 0.15
SHKBP1-213ENST00000597325 MPRIPQ6WCQ1 1025 aa16■□□□□ 0.15
SHKBP1-213ENST00000597325 PNISRQ8TF01 805 aaKnown RBP16■□□□□ 0.15
SHKBP1-213ENST00000597325 SMARCC1Q92922 1105 aaPredicted RBP16■□□□□ 0.15
SHKBP1-213ENST00000597325 CNTNAP1P78357 1384 aa16■□□□□ 0.15
SHKBP1-213ENST00000597325 POTECB2RU33 542 aa15.99■□□□□ 0.15
SHKBP1-213ENST00000597325 U2SURPO15042 1029 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-213ENST00000597325 PIM2Q9P1W9 311 aa15.99■□□□□ 0.15
SHKBP1-213ENST00000597325 LBX1P52954 281 aa15.98■□□□□ 0.15
SHKBP1-213ENST00000597325 EIF4A2Q14240 407 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-213ENST00000597325 CCDC87Q9NVE4 849 aa15.98■□□□□ 0.15
SHKBP1-213ENST00000597325 GNPATO15228 680 aa15.97■□□□□ 0.15
SHKBP1-213ENST00000597325 U2AF1L5P0DN76 240 aaPredicted RBP15.97■□□□□ 0.15
SHKBP1-213ENST00000597325 U2AF1Q01081 240 aaKnown RBP eCLIP15.97■□□□□ 0.15
SHKBP1-213ENST00000597325 NLGN1Q8N2Q7 840 aa15.97■□□□□ 0.15
SHKBP1-213ENST00000597325 WBP1LQ9NX94 342 aa15.97■□□□□ 0.15
SHKBP1-213ENST00000597325 VIRMAQ69YN4 1812 aaKnown RBP15.96■□□□□ 0.15
SHKBP1-213ENST00000597325 LOC102724428A0A0B4J2F2 783 aa15.96■□□□□ 0.15
SHKBP1-213ENST00000597325 IL13P35225 146 aa15.96■□□□□ 0.15
SHKBP1-213ENST00000597325 SIK1P57059 783 aa15.96■□□□□ 0.15
SHKBP1-213ENST00000597325 DALRD3Q5D0E6 543 aaKnown RBP15.96■□□□□ 0.15
SHKBP1-213ENST00000597325 ITPK1Q13572 414 aa15.95■□□□□ 0.14
SHKBP1-213ENST00000597325 AIDAQ96BJ3 306 aa15.95■□□□□ 0.14
SHKBP1-213ENST00000597325 NBPF6Q5VWK0 638 aa15.94■□□□□ 0.14
SHKBP1-213ENST00000597325 PIGBQ92521 554 aa15.94■□□□□ 0.14
SHKBP1-213ENST00000597325 NBPF4Q96M43 638 aa15.94■□□□□ 0.14
SHKBP1-213ENST00000597325 ADAMTS8Q9UP79 889 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms