RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 MMP10P09238 476 aa13.8□□□□□ -0.2
LIG1-209ENST00000596104 ZNF526Q8TF50 670 aaPredicted RBP13.8□□□□□ -0.2
LIG1-209ENST00000596104 SLC4A9Q96Q91 983 aa13.8□□□□□ -0.2
LIG1-209ENST00000596104 TIMELESSQ9UNS1 1208 aa13.79□□□□□ -0.2
LIG1-209ENST00000596104 PXDNLA1KZ92 1463 aa13.79□□□□□ -0.2
LIG1-209ENST00000596104 HSPA6P17066 643 aa13.78□□□□□ -0.2
LIG1-209ENST00000596104 TRIM26Q12899 539 aaPredicted RBP13.78□□□□□ -0.2
LIG1-209ENST00000596104 CICQ96RK0 1608 aaPredicted RBP13.78□□□□□ -0.2
LIG1-209ENST00000596104 ERVV-2B6SEH9 535 aa13.77□□□□□ -0.21
LIG1-209ENST00000596104 KIF3CO14782 793 aa13.77□□□□□ -0.21
LIG1-209ENST00000596104 TNNT2P45379 298 aaPredicted RBP13.77□□□□□ -0.21
LIG1-209ENST00000596104 RC3H1Q5TC82 1133 aaKnown RBP13.77□□□□□ -0.21
LIG1-209ENST00000596104 IFFO2Q5TF58 517 aa13.77□□□□□ -0.21
LIG1-209ENST00000596104 RTCBQ9Y3I0 505 aaKnown RBP13.77□□□□□ -0.21
LIG1-209ENST00000596104 C10orf71Q711Q0 1435 aa13.76□□□□□ -0.21
LIG1-209ENST00000596104 CNTNAP4Q9C0A0 1308 aa13.76□□□□□ -0.21
LIG1-209ENST00000596104 TRAPPC3LQ5T215 181 aa13.76□□□□□ -0.21
LIG1-209ENST00000596104 NLGN1Q8N2Q7 840 aa13.76□□□□□ -0.21
LIG1-209ENST00000596104 DCAF5Q96JK2 942 aa13.76□□□□□ -0.21
LIG1-209ENST00000596104 KDM6AO15550 1401 aaPredicted RBP13.75□□□□□ -0.21
LIG1-209ENST00000596104 HSP90AB1P08238 724 aaKnown RBP13.75□□□□□ -0.21
LIG1-209ENST00000596104 ADRA2BP18089 450 aa13.75□□□□□ -0.21
LIG1-209ENST00000596104 TGFB2P61812 414 aa13.75□□□□□ -0.21
LIG1-209ENST00000596104 ARHGEF1Q92888 912 aaKnown RBP13.75□□□□□ -0.21
LIG1-209ENST00000596104 RPS6KA4O75676 772 aa13.74□□□□□ -0.21
LIG1-209ENST00000596104 GYS1P13807 737 aa13.74□□□□□ -0.21
LIG1-209ENST00000596104 PLEKHO1Q53GL0 409 aaPredicted RBP13.74□□□□□ -0.21
LIG1-209ENST00000596104 POLR3GLQ9BT43 218 aa13.74□□□□□ -0.21
LIG1-209ENST00000596104 RBM42Q9BTD8 480 aaKnown RBP13.74□□□□□ -0.21
LIG1-209ENST00000596104 A0A0G2JLW4 131 aa13.73□□□□□ -0.21
LIG1-209ENST00000596104 ZNF530Q6P9A1 599 aaPredicted RBP13.73□□□□□ -0.21
LIG1-209ENST00000596104 BCS1LQ9Y276 419 aa13.73□□□□□ -0.21
LIG1-209ENST00000596104 KIAA1551Q9HCM1 1747 aa13.73□□□□□ -0.21
LIG1-209ENST00000596104 DPEP1P16444 411 aa13.72□□□□□ -0.21
LIG1-209ENST00000596104 AMOTQ4VCS5 1084 aa13.72□□□□□ -0.21
LIG1-209ENST00000596104 AEBP1Q8IUX7 1158 aa13.72□□□□□ -0.21
LIG1-209ENST00000596104 ZNF831Q5JPB2 1677 aa13.72□□□□□ -0.21
LIG1-209ENST00000596104 CLSPNQ9HAW4 1339 aa13.71□□□□□ -0.21
LIG1-209ENST00000596104 RFC4P35249 363 aa13.71□□□□□ -0.21
LIG1-209ENST00000596104 CABP4P57796 275 aa13.71□□□□□ -0.21
LIG1-209ENST00000596104 PANK3Q9H999 370 aa13.71□□□□□ -0.21
LIG1-209ENST00000596104 CCDC87Q9NVE4 849 aa13.71□□□□□ -0.21
LIG1-209ENST00000596104 KIF13BQ9NQT8 1826 aa13.71□□□□□ -0.22
LIG1-209ENST00000596104 KCNA3P22001 575 aa13.7□□□□□ -0.22
LIG1-209ENST00000596104 PTCD1O75127 700 aaKnown RBP13.69□□□□□ -0.22
LIG1-209ENST00000596104 FCHSD2O94868 740 aa13.69□□□□□ -0.22
LIG1-209ENST00000596104 CRKLP46109 303 aaKnown RBP13.69□□□□□ -0.22
LIG1-209ENST00000596104 MTHFSP49914 203 aa13.69□□□□□ -0.22
LIG1-209ENST00000596104 ARHGAP27Q6ZUM4 889 aa13.69□□□□□ -0.22
LIG1-209ENST00000596104 PARP3Q9Y6F1 533 aa13.69□□□□□ -0.22
LIG1-209ENST00000596104 C4AP0C0L4 1744 aa13.69□□□□□ -0.22
LIG1-209ENST00000596104 COL5A3P25940 1745 aaPredicted RBP13.68□□□□□ -0.22
LIG1-209ENST00000596104 HSPA5P11021 654 aaKnown RBP13.68□□□□□ -0.22
LIG1-209ENST00000596104 EIF4G2P78344 907 aaKnown RBP eCLIP13.68□□□□□ -0.221e-11■■■■■ 55.3
LIG1-209ENST00000596104 DDR1Q08345 913 aa13.68□□□□□ -0.22
LIG1-209ENST00000596104 C1orf141Q5JVX7 400 aa13.68□□□□□ -0.22
LIG1-209ENST00000596104 NFATC2IPQ8NCF5 419 aa13.68□□□□□ -0.22
LIG1-209ENST00000596104 SRP68Q9UHB9 627 aaKnown RBP13.68□□□□□ -0.22
LIG1-209ENST00000596104 USP42Q9H9J4 1324 aaKnown RBP13.67□□□□□ -0.22
LIG1-209ENST00000596104 TOMM70O94826 608 aa13.67□□□□□ -0.22
LIG1-209ENST00000596104 FKBP8Q14318 412 aa13.67□□□□□ -0.22
LIG1-209ENST00000596104 SULT6B1Q6IMI4 303 aa13.67□□□□□ -0.22
LIG1-209ENST00000596104 MORC1Q86VD1 984 aa13.67□□□□□ -0.22
LIG1-209ENST00000596104 NMRK2Q9NPI5 230 aa13.67□□□□□ -0.22
LIG1-209ENST00000596104 IL13P35225 146 aa13.66□□□□□ -0.22
LIG1-209ENST00000596104 APLP1P51693 650 aa13.66□□□□□ -0.22
LIG1-209ENST00000596104 INTS5Q6P9B9 1019 aaKnown RBP13.66□□□□□ -0.22
LIG1-209ENST00000596104 N4BP2Q86UW6 1770 aaPredicted RBP13.66□□□□□ -0.22
LIG1-209ENST00000596104 C9orf131Q5VYM1 1079 aa13.65□□□□□ -0.22
LIG1-209ENST00000596104 DNAJC5GQ8N7S2 189 aa13.65□□□□□ -0.22
LIG1-209ENST00000596104 PIM2Q9P1W9 311 aa13.65□□□□□ -0.22
LIG1-209ENST00000596104 MYH14Q7Z406 1995 aaKnown RBP13.65□□□□□ -0.22
LIG1-209ENST00000596104 POLRMTO00411 1230 aaKnown RBP13.63□□□□□ -0.23
LIG1-209ENST00000596104 TM4SF1P30408 202 aa13.63□□□□□ -0.23
LIG1-209ENST00000596104 CHRNA5P30532 468 aa13.63□□□□□ -0.23
LIG1-209ENST00000596104 DALRD3Q5D0E6 543 aaKnown RBP13.63□□□□□ -0.23
LIG1-209ENST00000596104 AKAP4Q5JQC9 854 aa13.63□□□□□ -0.23
LIG1-209ENST00000596104 DNAJC10Q8IXB1 793 aa13.63□□□□□ -0.23
LIG1-209ENST00000596104 SOS1Q07889 1333 aaPredicted RBP13.63□□□□□ -0.23
LIG1-209ENST00000596104 TJP1Q07157 1748 aa13.62□□□□□ -0.23
LIG1-209ENST00000596104 AMER1Q5JTC6 1135 aaPredicted RBP13.62□□□□□ -0.23
LIG1-209ENST00000596104 RBM46Q8TBY0 533 aaKnown RBP13.62□□□□□ -0.23
LIG1-209ENST00000596104 PCGF6Q9BYE7 350 aa13.62□□□□□ -0.23
LIG1-209ENST00000596104 SLC52A2Q9HAB3 445 aa13.62□□□□□ -0.23
LIG1-209ENST00000596104 BRCA1P38398 1863 aaKnown RBP13.61□□□□□ -0.23
LIG1-209ENST00000596104 ADAMTS7Q9UKP4 1686 aa13.61□□□□□ -0.23
LIG1-209ENST00000596104 CYP19A1P11511 503 aaPredicted RBP13.61□□□□□ -0.23
LIG1-209ENST00000596104 LGR6Q9HBX8 967 aa13.61□□□□□ -0.23
LIG1-209ENST00000596104 KNSTRNQ9Y448 316 aa13.61□□□□□ -0.23
LIG1-209ENST00000596104 MRC1P22897 1456 aa13.61□□□□□ -0.23
LIG1-209ENST00000596104 USPL1Q5W0Q7 1092 aa13.6□□□□□ -0.23
LIG1-209ENST00000596104 RNF181Q9P0P0 153 aa13.6□□□□□ -0.23
LIG1-209ENST00000596104 RNMTO43148 476 aaKnown RBP13.59□□□□□ -0.23
LIG1-209ENST00000596104 ZPR1O75312 459 aa13.59□□□□□ -0.23
LIG1-209ENST00000596104 SLC39A6Q13433 755 aa13.59□□□□□ -0.23
LIG1-209ENST00000596104 NFIXQ14938 502 aa13.59□□□□□ -0.23
LIG1-209ENST00000596104 KCPQ6ZWJ8 1503 aa13.59□□□□□ -0.23
LIG1-209ENST00000596104 FSTL1Q12841 308 aa13.58□□□□□ -0.24
LIG1-209ENST00000596104 BCL2L12Q9HB09 334 aa13.58□□□□□ -0.24
LIG1-209ENST00000596104 NARFQ9UHQ1 456 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms