RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 MORC1Q86VD1 984 aa32.78■■■□□ 2.84
LSM4-202ENST00000593564 ERVV-2B6SEH9 535 aa32.77■■■□□ 2.84
LSM4-202ENST00000593564 HSP90AB1P08238 724 aaKnown RBP32.77■■■□□ 2.84
LSM4-202ENST00000593564 PLEKHO1Q53GL0 409 aaPredicted RBP32.76■■■□□ 2.83
LSM4-202ENST00000593564 DCAF5Q96JK2 942 aa32.75■■■□□ 2.83
LSM4-202ENST00000593564 KDRP35968 1356 aa32.74■■■□□ 2.83
LSM4-202ENST00000593564 GNPATO15228 680 aa32.74■■■□□ 2.83
LSM4-202ENST00000593564 AMOTQ4VCS5 1084 aa32.73■■■□□ 2.83
LSM4-202ENST00000593564 KNSTRNQ9Y448 316 aa32.72■■■□□ 2.83
LSM4-202ENST00000593564 ZNF530Q6P9A1 599 aaPredicted RBP32.71■■■□□ 2.83
LSM4-202ENST00000593564 KDM6AO15550 1401 aaPredicted RBP32.7■■■□□ 2.83
LSM4-202ENST00000593564 AEBP1Q8IUX7 1158 aa32.69■■■□□ 2.82
LSM4-202ENST00000593564 C1QTNF8P60827 252 aa32.68■■■□□ 2.82
LSM4-202ENST00000593564 SLC4A9Q96Q91 983 aa32.68■■■□□ 2.82
LSM4-202ENST00000593564 ZNF831Q5JPB2 1677 aa32.68■■■□□ 2.82
LSM4-202ENST00000593564 CABP4P57796 275 aa32.65■■■□□ 2.82
LSM4-202ENST00000593564 RBM42Q9BTD8 480 aaKnown RBP32.65■■■□□ 2.82
LSM4-202ENST00000593564 IL13P35225 146 aa32.64■■■□□ 2.82
LSM4-202ENST00000593564 AMER1Q5JTC6 1135 aaPredicted RBP32.64■■■□□ 2.82
LSM4-202ENST00000593564 C1orf141Q5JVX7 400 aa32.64■■■□□ 2.82
LSM4-202ENST00000593564 SULT6B1Q6IMI4 303 aa32.64■■■□□ 2.82
LSM4-202ENST00000593564 RTCBQ9Y3I0 505 aaKnown RBP32.64■■■□□ 2.82
LSM4-202ENST00000593564 MTHFSP49914 203 aa32.63■■■□□ 2.81
LSM4-202ENST00000593564 RC3H1Q5TC82 1133 aaKnown RBP32.63■■■□□ 2.81
LSM4-202ENST00000593564 CNTNAP4Q9C0A0 1308 aa32.62■■■□□ 2.81
LSM4-202ENST00000593564 GIGYF1O75420 1035 aaPredicted RBP32.62■■■□□ 2.81
LSM4-202ENST00000593564 TRAPPC3LQ5T215 181 aa32.62■■■□□ 2.81
LSM4-202ENST00000593564 KIF7Q2M1P5 1343 aa32.61■■■□□ 2.81
LSM4-202ENST00000593564 ADRA2BP18089 450 aa32.61■■■□□ 2.81
LSM4-202ENST00000593564 MMP10P09238 476 aa32.59■■■□□ 2.81
LSM4-202ENST00000593564 COL5A3P25940 1745 aaPredicted RBP32.58■■■□□ 2.81
LSM4-202ENST00000593564 RPS6KA4O75676 772 aa32.56■■■□□ 2.8
LSM4-202ENST00000593564 NLGN1Q8N2Q7 840 aa32.56■■■□□ 2.8
LSM4-202ENST00000593564 ARHGEF1Q92888 912 aaKnown RBP32.56■■■□□ 2.8
LSM4-202ENST00000593564 ATP10DQ9P241 1426 aa32.55■■■□□ 2.8
LSM4-202ENST00000593564 SENP3-EIF4A1A0A087X0R7 540 aa32.55■■■□□ 2.8
LSM4-202ENST00000593564 NFATC2IPQ8NCF5 419 aa32.55■■■□□ 2.8
LSM4-202ENST00000593564 PTCD1O75127 700 aaKnown RBP32.53■■■□□ 2.8
LSM4-202ENST00000593564 WWC3Q9ULE0 1092 aa32.52■■■□□ 2.8
LSM4-202ENST00000593564 ADCY9O60503 1353 aa32.52■■■□□ 2.8
LSM4-202ENST00000593564 RFC4P35249 363 aa32.51■■■□□ 2.79
LSM4-202ENST00000593564 AKAP4Q5JQC9 854 aa32.51■■■□□ 2.79
LSM4-202ENST00000593564 GYS1P13807 737 aa32.5■■■□□ 2.79
LSM4-202ENST00000593564 CICQ96RK0 1608 aaPredicted RBP32.5■■■□□ 2.79
LSM4-202ENST00000593564 PXDNLA1KZ92 1463 aa32.49■■■□□ 2.79
LSM4-202ENST00000593564 MYH14Q7Z406 1995 aaKnown RBP32.49■■■□□ 2.79
LSM4-202ENST00000593564 PER1O15534 1290 aaPredicted RBP32.49■■■□□ 2.79
LSM4-202ENST00000593564 KIF13BQ9NQT8 1826 aa32.49■■■□□ 2.79
LSM4-202ENST00000593564 CRKLP46109 303 aaKnown RBP32.48■■■□□ 2.79
LSM4-202ENST00000593564 C10orf71Q711Q0 1435 aa32.48■■■□□ 2.79
LSM4-202ENST00000593564 SCN11AQ9UI33 1791 aa32.47■■■□□ 2.79
LSM4-202ENST00000593564 TGFB2P61812 414 aa32.47■■■□□ 2.79
LSM4-202ENST00000593564 SLC52A2Q9HAB3 445 aa32.45■■■□□ 2.79
LSM4-202ENST00000593564 CCDC87Q9NVE4 849 aa32.45■■■□□ 2.79
LSM4-202ENST00000593564 C4AP0C0L4 1744 aa32.44■■■□□ 2.78
LSM4-202ENST00000593564 GPBP1L1Q9HC44 474 aaPredicted RBP32.44■■■□□ 2.78
LSM4-202ENST00000593564 TJP1Q07157 1748 aa32.43■■■□□ 2.78
LSM4-202ENST00000593564 KIAA1551Q9HCM1 1747 aa32.43■■■□□ 2.78
LSM4-202ENST00000593564 HMOX1P09601 288 aa32.43■■■□□ 2.78
LSM4-202ENST00000593564 PARP3Q9Y6F1 533 aa32.43■■■□□ 2.78
LSM4-202ENST00000593564 MRC1P22897 1456 aa32.42■■■□□ 2.78
LSM4-202ENST00000593564 CC2D1BQ5T0F9 858 aaKnown RBP32.42■■■□□ 2.78
LSM4-202ENST00000593564 LGR6Q9HBX8 967 aa32.42■■■□□ 2.78
LSM4-202ENST00000593564 DIAPH1O60610 1272 aaKnown RBP32.41■■■□□ 2.78
LSM4-202ENST00000593564 RNMTO43148 476 aaKnown RBP32.4■■■□□ 2.78
LSM4-202ENST00000593564 A0A0G2JLW4 131 aa32.39■■■□□ 2.78
LSM4-202ENST00000593564 USP42Q9H9J4 1324 aaKnown RBP32.39■■■□□ 2.78
LSM4-202ENST00000593564 NPC1L1Q9UHC9 1359 aa32.38■■■□□ 2.77
LSM4-202ENST00000593564 INTS5Q6P9B9 1019 aaKnown RBP32.38■■■□□ 2.77
LSM4-202ENST00000593564 SRP68Q9UHB9 627 aaKnown RBP32.38■■■□□ 2.77
LSM4-202ENST00000593564 MTHFSDQ2M296 383 aaKnown RBP32.37■■■□□ 2.77
LSM4-202ENST00000593564 N4BP2Q86UW6 1770 aaPredicted RBP32.37■■■□□ 2.77
LSM4-202ENST00000593564 DPEP1P16444 411 aa32.36■■■□□ 2.77
LSM4-202ENST00000593564 DNAJC10Q8IXB1 793 aa32.36■■■□□ 2.77
LSM4-202ENST00000593564 BCS1LQ9Y276 419 aa32.36■■■□□ 2.77
LSM4-202ENST00000593564 FKBP8Q14318 412 aa32.35■■■□□ 2.77
LSM4-202ENST00000593564 ZNF526Q8TF50 670 aaPredicted RBP32.35■■■□□ 2.77
LSM4-202ENST00000593564 ADAMTS7Q9UKP4 1686 aa32.34■■■□□ 2.77
LSM4-202ENST00000593564 SLC39A6Q13433 755 aa32.33■■■□□ 2.77
LSM4-202ENST00000593564 COL3A1P02461 1466 aaPredicted RBP32.32■■■□□ 2.76
LSM4-202ENST00000593564 DDR1Q08345 913 aa32.32■■■□□ 2.76
LSM4-202ENST00000593564 KCPQ6ZWJ8 1503 aa32.31■■■□□ 2.76
LSM4-202ENST00000593564 SOS1Q07889 1333 aaPredicted RBP32.31■■■□□ 2.76
LSM4-202ENST00000593564 CYP19A1P11511 503 aaPredicted RBP32.31■■■□□ 2.76
LSM4-202ENST00000593564 CEP350Q5VT06 3117 aa32.3■■■□□ 2.76
LSM4-202ENST00000593564 KCNA3P22001 575 aa32.29■■■□□ 2.76
LSM4-202ENST00000593564 ZPR1O75312 459 aa32.28■■■□□ 2.76
LSM4-202ENST00000593564 FCHSD2O94868 740 aa32.28■■■□□ 2.76
LSM4-202ENST00000593564 VSIG10Q8N0Z9 540 aa32.28■■■□□ 2.76
LSM4-202ENST00000593564 BRCA1P38398 1863 aaKnown RBP32.27■■■□□ 2.76
LSM4-202ENST00000593564 TM4SF1P30408 202 aa32.27■■■□□ 2.76
LSM4-202ENST00000593564 VIRMAQ69YN4 1812 aaKnown RBP32.27■■■□□ 2.76
LSM4-202ENST00000593564 POLRMTO00411 1230 aaKnown RBP32.26■■■□□ 2.75
LSM4-202ENST00000593564 USPL1Q5W0Q7 1092 aa32.26■■■□□ 2.75
LSM4-202ENST00000593564 ARHGAP27Q6ZUM4 889 aa32.26■■■□□ 2.75
LSM4-202ENST00000593564 PIM2Q9P1W9 311 aa32.25■■■□□ 2.75
LSM4-202ENST00000593564 ZBTB1Q9Y2K1 713 aa32.24■■■□□ 2.75
LSM4-202ENST00000593564 COL15A1P39059 1388 aa32.23■■■□□ 2.75
LSM4-202ENST00000593564 U2SURPO15042 1029 aaKnown RBP32.23■■■□□ 2.75
LSM4-202ENST00000593564 CNGB1Q14028 1251 aaPredicted RBP32.23■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms