RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 SYT17Q9BSW7 474 aa14.71□□□□□ -0.05
LIG3-214ENST00000592244 KDM6AO15550 1401 aaPredicted RBP14.7□□□□□ -0.06
LIG3-214ENST00000592244 GNPATO15228 680 aa14.7□□□□□ -0.06
LIG3-214ENST00000592244 MAP3K5Q99683 1374 aa14.7□□□□□ -0.06
LIG3-214ENST00000592244 TOGARAM1Q9Y4F4 1720 aa14.69□□□□□ -0.06
LIG3-214ENST00000592244 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.69□□□□□ -0.06
LIG3-214ENST00000592244 PHF14O94880 888 aa14.69□□□□□ -0.06
LIG3-214ENST00000592244 NEFMP07197 916 aa14.69□□□□□ -0.06
LIG3-214ENST00000592244 PPP2R1AP30153 589 aa14.69□□□□□ -0.06
LIG3-214ENST00000592244 KLHL34Q8N239 644 aa14.69□□□□□ -0.06
LIG3-214ENST00000592244 LINC00116Q8NCU8 138 aa14.69□□□□□ -0.06
LIG3-214ENST00000592244 SLC52A2Q9HAB3 445 aa14.69□□□□□ -0.06
LIG3-214ENST00000592244 RTCBQ9Y3I0 505 aaKnown RBP14.69□□□□□ -0.06
LIG3-214ENST00000592244 PTCD1O75127 700 aaKnown RBP14.68□□□□□ -0.06
LIG3-214ENST00000592244 ADRA2BP18089 450 aa14.68□□□□□ -0.06
LIG3-214ENST00000592244 MTHFSDQ2M296 383 aaKnown RBP14.68□□□□□ -0.06
LIG3-214ENST00000592244 RC3H1Q5TC82 1133 aaKnown RBP14.68□□□□□ -0.06
LIG3-214ENST00000592244 QSER1Q2KHR3 1735 aa14.68□□□□□ -0.06
LIG3-214ENST00000592244 ITGB4P16144 1822 aa14.68□□□□□ -0.06
LIG3-214ENST00000592244 RNMTO43148 476 aaKnown RBP14.67□□□□□ -0.06
LIG3-214ENST00000592244 U2AF1L5P0DN76 240 aaPredicted RBP14.67□□□□□ -0.06
LIG3-214ENST00000592244 U2AF1Q01081 240 aaKnown RBP eCLIP14.67□□□□□ -0.06
LIG3-214ENST00000592244 ITPK1Q13572 414 aa14.67□□□□□ -0.06
LIG3-214ENST00000592244 TRAPPC3LQ5T215 181 aa14.67□□□□□ -0.06
LIG3-214ENST00000592244 C5P01031 1676 aa14.67□□□□□ -0.06
LIG3-214ENST00000592244 GNAT3A8MTJ3 354 aa14.66□□□□□ -0.06
LIG3-214ENST00000592244 TEFQ10587 303 aa14.66□□□□□ -0.06
LIG3-214ENST00000592244 MSL1Q68DK7 614 aa14.66□□□□□ -0.06
LIG3-214ENST00000592244 CNTNAP4Q9C0A0 1308 aa14.66□□□□□ -0.06
LIG3-214ENST00000592244 COL3A1P02461 1466 aaPredicted RBP14.65□□□□□ -0.06
LIG3-214ENST00000592244 FCHSD2O94868 740 aa14.65□□□□□ -0.06
LIG3-214ENST00000592244 TTC5Q8N0Z6 440 aa14.65□□□□□ -0.06
LIG3-214ENST00000592244 LGR6Q9HBX8 967 aa14.65□□□□□ -0.06
LIG3-214ENST00000592244 C4BP0C0L5 1744 aa14.65□□□□□ -0.06
LIG3-214ENST00000592244 PRKAR2BP31323 418 aa14.64□□□□□ -0.07
LIG3-214ENST00000592244 RFC4P35249 363 aa14.64□□□□□ -0.07
LIG3-214ENST00000592244 ZEB1P37275 1124 aaPredicted RBP14.64□□□□□ -0.07
LIG3-214ENST00000592244 RTF1Q92541 710 aaKnown RBP14.64□□□□□ -0.07
LIG3-214ENST00000592244 PNNQ9H307 717 aaKnown RBP14.64□□□□□ -0.07
LIG3-214ENST00000592244 RPS6KA4O75676 772 aa14.63□□□□□ -0.07
LIG3-214ENST00000592244 YY1P25490 414 aa14.63□□□□□ -0.07
LIG3-214ENST00000592244 RALBP1Q15311 655 aa14.63□□□□□ -0.07
LIG3-214ENST00000592244 GPR162Q16538 588 aa14.63□□□□□ -0.07
LIG3-214ENST00000592244 NLGN1Q8N2Q7 840 aa14.63□□□□□ -0.07
LIG3-214ENST00000592244 RSPH6AQ9H0K4 717 aa14.63□□□□□ -0.07
LIG3-214ENST00000592244 CD2APQ9Y5K6 639 aa14.63□□□□□ -0.07
LIG3-214ENST00000592244 VSIG10Q8N0Z9 540 aa14.62□□□□□ -0.07
LIG3-214ENST00000592244 SLC4A9Q96Q91 983 aa14.62□□□□□ -0.07
LIG3-214ENST00000592244 CRKLP46109 303 aaKnown RBP14.61□□□□□ -0.07
LIG3-214ENST00000592244 TAF1LQ8IZX4 1826 aa14.6□□□□□ -0.07
LIG3-214ENST00000592244 STARD3NLO95772 234 aa14.6□□□□□ -0.07
LIG3-214ENST00000592244 PELP1Q8IZL8 1130 aaKnown RBP14.6□□□□□ -0.07
LIG3-214ENST00000592244 ARHGEF1Q92888 912 aaKnown RBP14.6□□□□□ -0.07
LIG3-214ENST00000592244 TEX13AQ9BXU3 409 aaPredicted RBP14.6□□□□□ -0.07
LIG3-214ENST00000592244 MRC1P22897 1456 aa14.6□□□□□ -0.07
LIG3-214ENST00000592244 ZNF831Q5JPB2 1677 aa14.59□□□□□ -0.07
LIG3-214ENST00000592244 GRIN3BO60391 1043 aa14.59□□□□□ -0.07
LIG3-214ENST00000592244 DDX10Q13206 875 aaKnown RBP14.59□□□□□ -0.07
LIG3-214ENST00000592244 SLC39A6Q13433 755 aa14.59□□□□□ -0.07
LIG3-214ENST00000592244 AMIGO3Q86WK7 504 aa14.59□□□□□ -0.07
LIG3-214ENST00000592244 CCDC87Q9NVE4 849 aa14.59□□□□□ -0.07
LIG3-214ENST00000592244 TUBGCP6Q96RT7 1819 aa14.59□□□□□ -0.07
LIG3-214ENST00000592244 HTATSF1O43719 755 aaKnown RBP14.58□□□□□ -0.08
LIG3-214ENST00000592244 NPM2Q86SE8 214 aaKnown RBP14.58□□□□□ -0.08
LIG3-214ENST00000592244 IL17REQ8NFR9 667 aa14.58□□□□□ -0.08
LIG3-214ENST00000592244 PHACTR3Q96KR7 559 aa14.58□□□□□ -0.08
LIG3-214ENST00000592244 ZPR1O75312 459 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 MMP10P09238 476 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 ZNF790Q6PG37 636 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 SMIM5Q71RC9 77 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 DNAJC10Q8IXB1 793 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 FMNL2Q96PY5 1086 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 PARP3Q9Y6F1 533 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 SCN11AQ9UI33 1791 aa14.57□□□□□ -0.08
LIG3-214ENST00000592244 BTBD11A6QL63 1104 aa14.56□□□□□ -0.08
LIG3-214ENST00000592244 CYP19A1P11511 503 aaPredicted RBP14.56□□□□□ -0.08
LIG3-214ENST00000592244 NLGN2Q8NFZ4 835 aa14.56□□□□□ -0.08
LIG3-214ENST00000592244 MAPK8IP3Q9UPT6 1336 aa14.56□□□□□ -0.08
LIG3-214ENST00000592244 COL24A1Q17RW2 1714 aa14.55□□□□□ -0.08
LIG3-214ENST00000592244 UBR3Q6ZT12 1888 aa14.55□□□□□ -0.08
LIG3-214ENST00000592244 GYS1P13807 737 aa14.55□□□□□ -0.08
LIG3-214ENST00000592244 INTS5Q6P9B9 1019 aaKnown RBP14.55□□□□□ -0.08
LIG3-214ENST00000592244 CEMIPQ8WUJ3 1361 aa14.55□□□□□ -0.08
LIG3-214ENST00000592244 A0A087WZG4 1122 aa14.54□□□□□ -0.08
LIG3-214ENST00000592244 MYBBP1AQ9BQG0 1328 aaKnown RBP14.53□□□□□ -0.08
LIG3-214ENST00000592244 USP42Q9H9J4 1324 aaKnown RBP14.53□□□□□ -0.08
LIG3-214ENST00000592244 ZNF496Q96IT1 587 aaPredicted RBP14.53□□□□□ -0.08
LIG3-214ENST00000592244 ADAMTS7Q9UKP4 1686 aa14.52□□□□□ -0.08
LIG3-214ENST00000592244 HEG1Q9ULI3 1381 aa14.52□□□□□ -0.08
LIG3-214ENST00000592244 SOS1Q07889 1333 aaPredicted RBP14.52□□□□□ -0.08
LIG3-214ENST00000592244 TGFB2P61812 414 aa14.52□□□□□ -0.09
LIG3-214ENST00000592244 MCM10Q7L590 875 aa14.52□□□□□ -0.09
LIG3-214ENST00000592244 PNISRQ8TF01 805 aaKnown RBP14.52□□□□□ -0.09
LIG3-214ENST00000592244 CANXP27824 592 aaKnown RBP14.51□□□□□ -0.09
LIG3-214ENST00000592244 TAF7Q15545 349 aaPredicted RBP14.51□□□□□ -0.09
LIG3-214ENST00000592244 KCPQ6ZWJ8 1503 aa14.51□□□□□ -0.09
LIG3-214ENST00000592244 COL15A1P39059 1388 aa14.5□□□□□ -0.09
LIG3-214ENST00000592244 COL5A3P25940 1745 aaPredicted RBP14.5□□□□□ -0.09
LIG3-214ENST00000592244 WDR43Q15061 677 aaKnown RBP eCLIP14.5□□□□□ -0.09
LIG3-214ENST00000592244 NFE2L2Q16236 605 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms