RNA–Protein interactions for RNA: ENST00000590599.1

CTDP1-205, Transcript of CTD phosphatase subunit 1, humanhuman

TSL 2

Gene CTDP1, Length 1,762 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-205ENST00000590599 PPP4R2Q9NY27 417 aa23.27■■□□□ 1.32
CTDP1-205ENST00000590599 MIS18AQ9NYP9 233 aa23.27■■□□□ 1.32
CTDP1-205ENST00000590599 KRT27Q7Z3Y8 459 aa23.27■■□□□ 1.32
CTDP1-205ENST00000590599 TSPYL6Q8N831 410 aa23.27■■□□□ 1.32
CTDP1-205ENST00000590599 C8orf58Q8NAV2 365 aa23.27■■□□□ 1.32
CTDP1-205ENST00000590599 FRAT1Q92837 279 aaPredicted RBP23.27■■□□□ 1.32
CTDP1-205ENST00000590599 LGR6Q9HBX8 967 aa23.27■■□□□ 1.32
CTDP1-205ENST00000590599 BABAM1Q9NWV8 329 aa23.27■■□□□ 1.32
CTDP1-205ENST00000590599 ADAMTS7Q9UKP4 1686 aa23.26■■□□□ 1.31
CTDP1-205ENST00000590599 ALDH1L2Q3SY69 923 aa23.26■■□□□ 1.31
CTDP1-205ENST00000590599 SSH1Q8WYL5 1049 aa23.26■■□□□ 1.31
CTDP1-205ENST00000590599 ELL2O00472 640 aaPredicted RBP23.25■■□□□ 1.31
CTDP1-205ENST00000590599 RNMTO43148 476 aaKnown RBP23.25■■□□□ 1.31
CTDP1-205ENST00000590599 VAMP4O75379 141 aa23.25■■□□□ 1.31
CTDP1-205ENST00000590599 IL2RBP14784 551 aa23.25■■□□□ 1.31
CTDP1-205ENST00000590599 TEFQ10587 303 aa23.25■■□□□ 1.31
CTDP1-205ENST00000590599 C20orf194Q5TEA3 1177 aa23.25■■□□□ 1.31
CTDP1-205ENST00000590599 IFNL2Q8IZJ0 200 aa23.24■■□□□ 1.31
CTDP1-205ENST00000590599 PHKG2P15735 406 aa23.24■■□□□ 1.31
CTDP1-205ENST00000590599 EXOC6Q8TAG9 804 aa23.24■■□□□ 1.31
CTDP1-205ENST00000590599 SCN11AQ9UI33 1791 aa23.23■■□□□ 1.31
CTDP1-205ENST00000590599 CRBNQ96SW2 442 aa23.22■■□□□ 1.31
CTDP1-205ENST00000590599 KDM3BQ7LBC6 1761 aa23.21■■□□□ 1.31
CTDP1-205ENST00000590599 KIF16BQ96L93 1317 aa23.21■■□□□ 1.31
CTDP1-205ENST00000590599 PCDH11XQ9BZA7 1347 aa23.21■■□□□ 1.31
CTDP1-205ENST00000590599 PCDH11YQ9BZA8 1340 aa23.21■■□□□ 1.31
CTDP1-205ENST00000590599 HSP90AB1P08238 724 aaKnown RBP23.21■■□□□ 1.31
CTDP1-205ENST00000590599 PDE3AQ14432 1141 aa23.21■■□□□ 1.31
CTDP1-205ENST00000590599 ZCRB1Q8TBF4 217 aaKnown RBP23.21■■□□□ 1.31
CTDP1-205ENST00000590599 SIPA1L3O60292 1781 aaPredicted RBP23.21■■□□□ 1.31
CTDP1-205ENST00000590599 CYP27B1O15528 508 aa23.2■■□□□ 1.3
CTDP1-205ENST00000590599 KDM6AO15550 1401 aaPredicted RBP23.2■■□□□ 1.3
CTDP1-205ENST00000590599 KRT24Q2M2I5 525 aa23.2■■□□□ 1.3
CTDP1-205ENST00000590599 ZKSCAN2Q63HK3 967 aa23.2■■□□□ 1.3
CTDP1-205ENST00000590599 SRCAPQ6ZRS2 3230 aa23.2■■□□□ 1.3
CTDP1-205ENST00000590599 WNK3Q9BYP7 1800 aa23.2■■□□□ 1.3
CTDP1-205ENST00000590599 SHANK3Q9BYB0 1731 aa23.18■■□□□ 1.3
CTDP1-205ENST00000590599 DCAF5Q96JK2 942 aa23.18■■□□□ 1.3
CTDP1-205ENST00000590599 BTBD11A6QL63 1104 aa23.17■■□□□ 1.3
CTDP1-205ENST00000590599 BRPF1P55201 1214 aaPredicted RBP23.17■■□□□ 1.3
CTDP1-205ENST00000590599 DEFB132Q7Z7B7 95 aa23.17■■□□□ 1.3
CTDP1-205ENST00000590599 IPO8O15397 1037 aaKnown RBP23.16■■□□□ 1.3
CTDP1-205ENST00000590599 MS4A1P11836 297 aa23.16■■□□□ 1.3
CTDP1-205ENST00000590599 BARGINQ6ZT62 677 aa23.16■■□□□ 1.3
CTDP1-205ENST00000590599 NOB1Q9ULX3 412 aaKnown RBP23.16■■□□□ 1.3
CTDP1-205ENST00000590599 MRPL50Q8N5N7 158 aaKnown RBP23.15■■□□□ 1.3
CTDP1-205ENST00000590599 PANK1Q8TE04 598 aa23.15■■□□□ 1.3
CTDP1-205ENST00000590599 DISP2A7MBM2 1401 aa23.15■■□□□ 1.3
CTDP1-205ENST00000590599 SOS1Q07889 1333 aaPredicted RBP23.15■■□□□ 1.3
CTDP1-205ENST00000590599 MRC1P22897 1456 aa23.15■■□□□ 1.3
CTDP1-205ENST00000590599 B4GALNT3Q6L9W6 998 aa23.14■■□□□ 1.29
CTDP1-205ENST00000590599 ATF7IPQ6VMQ6 1270 aa23.14■■□□□ 1.29
CTDP1-205ENST00000590599 FTSJ3Q8IY81 847 aaKnown RBP23.14■■□□□ 1.29
CTDP1-205ENST00000590599 SLC52A2Q9HAB3 445 aa23.14■■□□□ 1.29
CTDP1-205ENST00000590599 TCERG1O14776 1098 aaKnown RBP23.13■■□□□ 1.29
CTDP1-205ENST00000590599 CCDC136Q96JN2 1154 aa23.13■■□□□ 1.29
CTDP1-205ENST00000590599 TRIM27P14373 513 aa23.12■■□□□ 1.29
CTDP1-205ENST00000590599 TNS1Q9HBL0 1735 aaKnown RBP23.12■■□□□ 1.29
CTDP1-205ENST00000590599 DZIP1LQ8IYY4 767 aaKnown RBP23.12■■□□□ 1.29
CTDP1-205ENST00000590599 DDX54Q8TDD1 881 aaKnown RBP23.12■■□□□ 1.29
CTDP1-205ENST00000590599 CLUAP1Q96AJ1 413 aa23.12■■□□□ 1.29
CTDP1-205ENST00000590599 EIF4A1P60842 406 aaKnown RBP23.11■■□□□ 1.29
CTDP1-205ENST00000590599 TNNQ9UQP3 1299 aa23.11■■□□□ 1.29
CTDP1-205ENST00000590599 COG6Q9Y2V7 657 aa23.1■■□□□ 1.29
CTDP1-205ENST00000590599 THRAP3Q9Y2W1 955 aaKnown RBP23.1■■□□□ 1.29
CTDP1-205ENST00000590599 RLBP1P12271 317 aa23.09■■□□□ 1.29
CTDP1-205ENST00000590599 ARHGAP45Q92619 1136 aa23.09■■□□□ 1.29
CTDP1-205ENST00000590599 CDCA7Q9BWT1 371 aaPredicted RBP23.09■■□□□ 1.29
CTDP1-205ENST00000590599 KCNQ3O43525 872 aa23.09■■□□□ 1.29
CTDP1-205ENST00000590599 CABP4P57796 275 aa23.09■■□□□ 1.29
CTDP1-205ENST00000590599 NKX1-1Q15270 411 aaPredicted RBP23.09■■□□□ 1.29
CTDP1-205ENST00000590599 NFATC2IPQ8NCF5 419 aa23.09■■□□□ 1.29
CTDP1-205ENST00000590599 TRIM37O94972 964 aa23.07■■□□□ 1.28
CTDP1-205ENST00000590599 HOXB7P09629 217 aa23.07■■□□□ 1.28
CTDP1-205ENST00000590599 CCDC30Q5VVM6 783 aa23.07■■□□□ 1.28
CTDP1-205ENST00000590599 CCDC125Q86Z20 511 aa23.07■■□□□ 1.28
CTDP1-205ENST00000590599 STK31Q9BXU1 1019 aa23.07■■□□□ 1.28
CTDP1-205ENST00000590599 SBF2Q86WG5 1849 aa23.06■■□□□ 1.28
CTDP1-205ENST00000590599 TNS2Q63HR2 1409 aa23.06■■□□□ 1.28
CTDP1-205ENST00000590599 CHMP4AQ9BY43 222 aa23.06■■□□□ 1.28
CTDP1-205ENST00000590599 ERVV-2B6SEH9 535 aa23.05■■□□□ 1.28
CTDP1-205ENST00000590599 MVPQ14764 893 aaKnown RBP23.05■■□□□ 1.28
CTDP1-205ENST00000590599 ZNF790Q6PG37 636 aa23.05■■□□□ 1.28
CTDP1-205ENST00000590599 API5Q9BZZ5 524 aaKnown RBP23.05■■□□□ 1.28
CTDP1-205ENST00000590599 EXOC5O00471 708 aa23.04■■□□□ 1.28
CTDP1-205ENST00000590599 SLC4A2P04920 1241 aa23.04■■□□□ 1.28
CTDP1-205ENST00000590599 HDGFL1Q5TGJ6 251 aa23.04■■□□□ 1.28
CTDP1-205ENST00000590599 CACNA1FO60840 1977 aa23.04■■□□□ 1.28
CTDP1-205ENST00000590599 TOGARAM1Q9Y4F4 1720 aa23.04■■□□□ 1.28
CTDP1-205ENST00000590599 DDB1Q16531 1140 aa23.04■■□□□ 1.28
CTDP1-205ENST00000590599 EN1Q05925 392 aaPredicted RBP23.03■■□□□ 1.28
CTDP1-205ENST00000590599 SF3B2Q13435 895 aaKnown RBP23.03■■□□□ 1.28
CTDP1-205ENST00000590599 PTF1AQ7RTS3 328 aa23.03■■□□□ 1.28
CTDP1-205ENST00000590599 ITPRIPQ8IWB1 547 aa23.03■■□□□ 1.28
CTDP1-205ENST00000590599 TTC5Q8N0Z6 440 aa23.03■■□□□ 1.28
CTDP1-205ENST00000590599 NECTIN2Q92692 538 aa23.03■■□□□ 1.28
CTDP1-205ENST00000590599 PTPRCP08575 1304 aa23.02■■□□□ 1.28
CTDP1-205ENST00000590599 SLC39A6Q13433 755 aa23.02■■□□□ 1.28
CTDP1-205ENST00000590599 AAMPQ13685 434 aa23.02■■□□□ 1.28
CTDP1-205ENST00000590599 HEG1Q9ULI3 1381 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms