RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 GNPATO15228 680 aa30.28■■■□□ 2.44
SHMT1-210ENST00000583780 KIF3CO14782 793 aa30.27■■■□□ 2.44
SHMT1-210ENST00000583780 KIF13BQ9NQT8 1826 aa30.25■■■□□ 2.43
SHMT1-210ENST00000583780 SLC4A9Q96Q91 983 aa30.25■■■□□ 2.43
SHMT1-210ENST00000583780 MMP10P09238 476 aa30.24■■■□□ 2.43
SHMT1-210ENST00000583780 KIAA1551Q9HCM1 1747 aa30.24■■■□□ 2.43
SHMT1-210ENST00000583780 N4BP2Q86UW6 1770 aaPredicted RBP30.21■■■□□ 2.43
SHMT1-210ENST00000583780 EIF4A2Q14240 407 aaKnown RBP30.21■■■□□ 2.43
SHMT1-210ENST00000583780 PXDNLA1KZ92 1463 aa30.2■■■□□ 2.43
SHMT1-210ENST00000583780 TRAPPC3LQ5T215 181 aa30.2■■■□□ 2.43
SHMT1-210ENST00000583780 CICQ96RK0 1608 aaPredicted RBP30.2■■■□□ 2.43
SHMT1-210ENST00000583780 KDRP35968 1356 aa30.19■■■□□ 2.42
SHMT1-210ENST00000583780 TGFB2P61812 414 aa30.19■■■□□ 2.42
SHMT1-210ENST00000583780 A0A0G2JLW4 131 aa30.17■■■□□ 2.42
SHMT1-210ENST00000583780 NLGN1Q8N2Q7 840 aa30.17■■■□□ 2.42
SHMT1-210ENST00000583780 ARHGEF1Q92888 912 aaKnown RBP30.17■■■□□ 2.42
SHMT1-210ENST00000583780 RTCBQ9Y3I0 505 aaKnown RBP30.17■■■□□ 2.42
SHMT1-210ENST00000583780 ZNF831Q5JPB2 1677 aa30.17■■■□□ 2.42
SHMT1-210ENST00000583780 MYH14Q7Z406 1995 aaKnown RBP30.16■■■□□ 2.42
SHMT1-210ENST00000583780 ERVV-2B6SEH9 535 aa30.16■■■□□ 2.42
SHMT1-210ENST00000583780 RC3H1Q5TC82 1133 aaKnown RBP30.16■■■□□ 2.42
SHMT1-210ENST00000583780 GYS1P13807 737 aa30.13■■■□□ 2.41
SHMT1-210ENST00000583780 TNNT2P45379 298 aaPredicted RBP30.13■■■□□ 2.41
SHMT1-210ENST00000583780 RBM42Q9BTD8 480 aaKnown RBP30.13■■■□□ 2.41
SHMT1-210ENST00000583780 BCS1LQ9Y276 419 aa30.13■■■□□ 2.41
SHMT1-210ENST00000583780 PLEKHG2Q9H7P9 1386 aa30.13■■■□□ 2.41
SHMT1-210ENST00000583780 RPS6KA4O75676 772 aa30.12■■■□□ 2.41
SHMT1-210ENST00000583780 COL5A3P25940 1745 aaPredicted RBP30.12■■■□□ 2.41
SHMT1-210ENST00000583780 DPEP1P16444 411 aa30.11■■■□□ 2.41
SHMT1-210ENST00000583780 DCAF5Q96JK2 942 aa30.11■■■□□ 2.41
SHMT1-210ENST00000583780 C10orf71Q711Q0 1435 aa30.11■■■□□ 2.41
SHMT1-210ENST00000583780 BRCA1P38398 1863 aaKnown RBP30.1■■■□□ 2.41
SHMT1-210ENST00000583780 ADRA2BP18089 450 aa30.1■■■□□ 2.41
SHMT1-210ENST00000583780 KCNA3P22001 575 aa30.1■■■□□ 2.41
SHMT1-210ENST00000583780 CNTNAP4Q9C0A0 1308 aa30.09■■■□□ 2.41
SHMT1-210ENST00000583780 ARHGAP27Q6ZUM4 889 aa30.08■■■□□ 2.41
SHMT1-210ENST00000583780 C4AP0C0L4 1744 aa30.08■■■□□ 2.41
SHMT1-210ENST00000583780 TOMM70O94826 608 aa30.07■■■□□ 2.4
SHMT1-210ENST00000583780 HSP90AB1P08238 724 aaKnown RBP30.07■■■□□ 2.4
SHMT1-210ENST00000583780 DNAJC5GQ8N7S2 189 aa30.07■■■□□ 2.4
SHMT1-210ENST00000583780 CCDC87Q9NVE4 849 aa30.07■■■□□ 2.4
SHMT1-210ENST00000583780 KDM6AO15550 1401 aaPredicted RBP30.06■■■□□ 2.4
SHMT1-210ENST00000583780 RFC4P35249 363 aa30.06■■■□□ 2.4
SHMT1-210ENST00000583780 PLEKHO1Q53GL0 409 aaPredicted RBP30.06■■■□□ 2.4
SHMT1-210ENST00000583780 FCHSD2O94868 740 aa30.04■■■□□ 2.4
SHMT1-210ENST00000583780 APLP1P51693 650 aa30.04■■■□□ 2.4
SHMT1-210ENST00000583780 CABP4P57796 275 aa30.04■■■□□ 2.4
SHMT1-210ENST00000583780 PARP3Q9Y6F1 533 aa30.04■■■□□ 2.4
SHMT1-210ENST00000583780 NMRK2Q9NPI5 230 aa30.03■■■□□ 2.4
SHMT1-210ENST00000583780 TIMELESSQ9UNS1 1208 aa30.03■■■□□ 2.4
SHMT1-210ENST00000583780 ZNF530Q6P9A1 599 aaPredicted RBP30.02■■■□□ 2.4
SHMT1-210ENST00000583780 POLR3GLQ9BT43 218 aa30.02■■■□□ 2.4
SHMT1-210ENST00000583780 ARFGEF1Q9Y6D6 1849 aa30.01■■■□□ 2.4
SHMT1-210ENST00000583780 AMOTQ4VCS5 1084 aa30.01■■■□□ 2.39
SHMT1-210ENST00000583780 NFATC2IPQ8NCF5 419 aa30■■■□□ 2.39
SHMT1-210ENST00000583780 PTCD1O75127 700 aaKnown RBP29.99■■■□□ 2.39
SHMT1-210ENST00000583780 MTHFSP49914 203 aa29.99■■■□□ 2.39
SHMT1-210ENST00000583780 AEBP1Q8IUX7 1158 aa29.99■■■□□ 2.39
SHMT1-210ENST00000583780 CRKLP46109 303 aaKnown RBP29.98■■■□□ 2.39
SHMT1-210ENST00000583780 PANK3Q9H999 370 aa29.98■■■□□ 2.39
SHMT1-210ENST00000583780 SRP68Q9UHB9 627 aaKnown RBP29.98■■■□□ 2.39
SHMT1-210ENST00000583780 FKBP8Q14318 412 aa29.97■■■□□ 2.39
SHMT1-210ENST00000583780 C9orf131Q5VYM1 1079 aa29.97■■■□□ 2.39
SHMT1-210ENST00000583780 PIM2Q9P1W9 311 aa29.97■■■□□ 2.39
SHMT1-210ENST00000583780 DDR1Q08345 913 aa29.96■■■□□ 2.39
SHMT1-210ENST00000583780 USP42Q9H9J4 1324 aaKnown RBP29.94■■■□□ 2.38
SHMT1-210ENST00000583780 SBF1O95248 1867 aa29.93■■■□□ 2.38
SHMT1-210ENST00000583780 INTS5Q6P9B9 1019 aaKnown RBP29.93■■■□□ 2.38
SHMT1-210ENST00000583780 TJP1Q07157 1748 aa29.93■■■□□ 2.38
SHMT1-210ENST00000583780 ADAMTS7Q9UKP4 1686 aa29.92■■■□□ 2.38
SHMT1-210ENST00000583780 TM4SF1P30408 202 aa29.92■■■□□ 2.38
SHMT1-210ENST00000583780 C1orf141Q5JVX7 400 aa29.91■■■□□ 2.38
SHMT1-210ENST00000583780 RBM46Q8TBY0 533 aaKnown RBP29.91■■■□□ 2.38
SHMT1-210ENST00000583780 SCN11AQ9UI33 1791 aa29.9■■■□□ 2.38
SHMT1-210ENST00000583780 CHRNA5P30532 468 aa29.9■■■□□ 2.38
SHMT1-210ENST00000583780 DALRD3Q5D0E6 543 aaKnown RBP29.9■■■□□ 2.38
SHMT1-210ENST00000583780 SULT6B1Q6IMI4 303 aa29.9■■■□□ 2.38
SHMT1-210ENST00000583780 PCGF6Q9BYE7 350 aa29.89■■■□□ 2.38
SHMT1-210ENST00000583780 POLRMTO00411 1230 aaKnown RBP29.88■■■□□ 2.37
SHMT1-210ENST00000583780 IL13P35225 146 aa29.87■■■□□ 2.37
SHMT1-210ENST00000583780 WDR90Q96KV7 1748 aa29.87■■■□□ 2.37
SHMT1-210ENST00000583780 MORC1Q86VD1 984 aa29.86■■■□□ 2.37
SHMT1-210ENST00000583780 HSPA5P11021 654 aaKnown RBP29.85■■■□□ 2.37
SHMT1-210ENST00000583780 HTRA3P83110 453 aa29.85■■■□□ 2.37
SHMT1-210ENST00000583780 DNAJC10Q8IXB1 793 aa29.85■■■□□ 2.37
SHMT1-210ENST00000583780 KCPQ6ZWJ8 1503 aa29.85■■■□□ 2.37
SHMT1-210ENST00000583780 RRAGCQ9HB90 399 aa29.84■■■□□ 2.37
SHMT1-210ENST00000583780 LGR6Q9HBX8 967 aa29.84■■■□□ 2.37
SHMT1-210ENST00000583780 RNF181Q9P0P0 153 aa29.84■■■□□ 2.37
SHMT1-210ENST00000583780 USPL1Q5W0Q7 1092 aa29.83■■■□□ 2.37
SHMT1-210ENST00000583780 EIF4G2P78344 907 aaKnown RBP eCLIP29.82■■■□□ 2.36
SHMT1-210ENST00000583780 FSTL1Q12841 308 aa29.82■■■□□ 2.36
SHMT1-210ENST00000583780 AFDNP55196 1824 aaKnown RBP29.82■■■□□ 2.36
SHMT1-210ENST00000583780 KDM2BQ8NHM5 1336 aa29.81■■■□□ 2.36
SHMT1-210ENST00000583780 AKAP4Q5JQC9 854 aa29.81■■■□□ 2.36
SHMT1-210ENST00000583780 C16orf71Q8IYS4 520 aaPredicted RBP29.81■■■□□ 2.36
SHMT1-210ENST00000583780 SLC52A2Q9HAB3 445 aa29.81■■■□□ 2.36
SHMT1-210ENST00000583780 SOS1Q07889 1333 aaPredicted RBP29.8■■■□□ 2.36
SHMT1-210ENST00000583780 KLRG1Q96E93 195 aa29.8■■■□□ 2.36
SHMT1-210ENST00000583780 ZPR1O75312 459 aa29.79■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms