RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	ZNF526	Q8TF50	670 aa	Predicted RBP	18.75	■□□□□ 0.59
SS18-222	ENST00000582792	CLSPN	Q9HAW4	1339 aa		18.74	■□□□□ 0.59
SS18-222	ENST00000582792	KDR	P35968	1356 aa		18.74	■□□□□ 0.59
SS18-222	ENST00000582792	EIF4A2	Q14240	407 aa	Known RBP	18.74	■□□□□ 0.59
SS18-222	ENST00000582792	CIC	Q96RK0	1608 aa	Predicted RBP	18.74	■□□□□ 0.59
SS18-222	ENST00000582792	ZNF831	Q5JPB2	1677 aa		18.73	■□□□□ 0.59
SS18-222	ENST00000582792	KIF13B	Q9NQT8	1826 aa		18.73	■□□□□ 0.59
SS18-222	ENST00000582792	MMP10	P09238	476 aa		18.73	■□□□□ 0.59
SS18-222	ENST00000582792	TIMELESS	Q9UNS1	1208 aa		18.72	■□□□□ 0.59
SS18-222	ENST00000582792	KIAA1551	Q9HCM1	1747 aa		18.71	■□□□□ 0.59
SS18-222	ENST00000582792	PXDNL	A1KZ92	1463 aa		18.71	■□□□□ 0.59
SS18-222	ENST00000582792	HSPA6	P17066	643 aa		18.71	■□□□□ 0.59
SS18-222	ENST00000582792	IFFO2	Q5TF58	517 aa		18.71	■□□□□ 0.59
SS18-222	ENST00000582792	RTCB	Q9Y3I0	505 aa	Known RBP	18.71	■□□□□ 0.59
SS18-222	ENST00000582792	ERVV-2	B6SEH9	535 aa		18.7	■□□□□ 0.58
SS18-222	ENST00000582792	TNNT2	P45379	298 aa	Predicted RBP	18.7	■□□□□ 0.58
SS18-222	ENST00000582792	TRAPPC3L	Q5T215	181 aa		18.7	■□□□□ 0.58
SS18-222	ENST00000582792	SLC4A9	Q96Q91	983 aa		18.7	■□□□□ 0.58
SS18-222	ENST00000582792	COL5A3	P25940	1745 aa	Predicted RBP	18.69	■□□□□ 0.58
SS18-222	ENST00000582792	NLGN1	Q8N2Q7	840 aa		18.69	■□□□□ 0.58
SS18-222	ENST00000582792	DCAF5	Q96JK2	942 aa		18.69	■□□□□ 0.58
SS18-222	ENST00000582792	C10orf71	Q711Q0	1435 aa		18.68	■□□□□ 0.58
SS18-222	ENST00000582792	HSP90AB1	P08238	724 aa	Known RBP	18.68	■□□□□ 0.58
SS18-222	ENST00000582792	ADRA2B	P18089	450 aa		18.68	■□□□□ 0.58
SS18-222	ENST00000582792	TGFB2	P61812	414 aa		18.68	■□□□□ 0.58
SS18-222	ENST00000582792	RC3H1	Q5TC82	1133 aa	Known RBP	18.68	■□□□□ 0.58
SS18-222	ENST00000582792	CNTNAP4	Q9C0A0	1308 aa		18.68	■□□□□ 0.58
SS18-222	ENST00000582792	N4BP2	Q86UW6	1770 aa	Predicted RBP	18.68	■□□□□ 0.58
SS18-222	ENST00000582792	KIF3C	O14782	793 aa		18.67	■□□□□ 0.58
SS18-222	ENST00000582792	ARHGEF1	Q92888	912 aa	Known RBP	18.67	■□□□□ 0.58
SS18-222	ENST00000582792	POLR3GL	Q9BT43	218 aa		18.67	■□□□□ 0.58
SS18-222	ENST00000582792	RBM42	Q9BTD8	480 aa	Known RBP	18.67	■□□□□ 0.58
SS18-222	ENST00000582792	PLEKHO1	Q53GL0	409 aa	Predicted RBP	18.66	■□□□□ 0.58
SS18-222	ENST00000582792	C4A	P0C0L4	1744 aa		18.66	■□□□□ 0.58
SS18-222	ENST00000582792	KDM6A	O15550	1401 aa	Predicted RBP	18.66	■□□□□ 0.58
SS18-222	ENST00000582792	GYS1	P13807	737 aa		18.65	■□□□□ 0.58
SS18-222	ENST00000582792	BCS1L	Q9Y276	419 aa		18.65	■□□□□ 0.58
SS18-222	ENST00000582792		A0A0G2JLW4	131 aa		18.64	■□□□□ 0.57
SS18-222	ENST00000582792	RPS6KA4	O75676	772 aa		18.64	■□□□□ 0.57
SS18-222	ENST00000582792	AMOT	Q4VCS5	1084 aa		18.64	■□□□□ 0.57
SS18-222	ENST00000582792	ZNF530	Q6P9A1	599 aa	Predicted RBP	18.64	■□□□□ 0.57
SS18-222	ENST00000582792	MYH14	Q7Z406	1995 aa	Known RBP	18.63	■□□□□ 0.57
SS18-222	ENST00000582792	RFC4	P35249	363 aa		18.63	■□□□□ 0.57
SS18-222	ENST00000582792	CABP4	P57796	275 aa		18.63	■□□□□ 0.57
SS18-222	ENST00000582792	CCDC87	Q9NVE4	849 aa		18.63	■□□□□ 0.57
SS18-222	ENST00000582792	BRCA1	P38398	1863 aa	Known RBP	18.63	■□□□□ 0.57
SS18-222	ENST00000582792	DPEP1	P16444	411 aa		18.61	■□□□□ 0.57
SS18-222	ENST00000582792	PANK3	Q9H999	370 aa		18.61	■□□□□ 0.57
SS18-222	ENST00000582792	PARP3	Q9Y6F1	533 aa		18.61	■□□□□ 0.57
SS18-222	ENST00000582792	MTHFS	P49914	203 aa		18.6	■□□□□ 0.57
SS18-222	ENST00000582792	ARHGAP27	Q6ZUM4	889 aa		18.6	■□□□□ 0.57
SS18-222	ENST00000582792	PTCD1	O75127	700 aa	Known RBP	18.59	■□□□□ 0.57
SS18-222	ENST00000582792	FCHSD2	O94868	740 aa		18.59	■□□□□ 0.57
SS18-222	ENST00000582792	KCNA3	P22001	575 aa		18.59	■□□□□ 0.57
SS18-222	ENST00000582792	C1orf141	Q5JVX7	400 aa		18.59	■□□□□ 0.57
SS18-222	ENST00000582792	AEBP1	Q8IUX7	1158 aa		18.59	■□□□□ 0.57
SS18-222	ENST00000582792	TOMM70	O94826	608 aa		18.58	■□□□□ 0.56
SS18-222	ENST00000582792	CRKL	P46109	303 aa	Known RBP	18.58	■□□□□ 0.56
SS18-222	ENST00000582792	EIF4G2	P78344	907 aa	Known RBP eCLIP	18.58	■□□□□ 0.56
SS18-222	ENST00000582792	CCER1	Q8TC90	406 aa	Predicted RBP	18.58	■□□□□ 0.56
SS18-222	ENST00000582792	ARFGEF1	Q9Y6D6	1849 aa		18.58	■□□□□ 0.56
SS18-222	ENST00000582792	TJP1	Q07157	1748 aa		18.57	■□□□□ 0.56
SS18-222	ENST00000582792	HSPA5	P11021	654 aa	Known RBP	18.57	■□□□□ 0.56
SS18-222	ENST00000582792	APLP1	P51693	650 aa		18.57	■□□□□ 0.56
SS18-222	ENST00000582792	NFATC2IP	Q8NCF5	419 aa		18.57	■□□□□ 0.56
SS18-222	ENST00000582792	USP42	Q9H9J4	1324 aa	Known RBP	18.56	■□□□□ 0.56
SS18-222	ENST00000582792	MORC1	Q86VD1	984 aa		18.56	■□□□□ 0.56
SS18-222	ENST00000582792	SULT6B1	Q6IMI4	303 aa		18.55	■□□□□ 0.56
SS18-222	ENST00000582792	NMRK2	Q9NPI5	230 aa		18.55	■□□□□ 0.56
SS18-222	ENST00000582792	SRP68	Q9UHB9	627 aa	Known RBP	18.55	■□□□□ 0.56
SS18-222	ENST00000582792	SCN11A	Q9UI33	1791 aa		18.55	■□□□□ 0.56
SS18-222	ENST00000582792	DDR1	Q08345	913 aa		18.54	■□□□□ 0.56
SS18-222	ENST00000582792	FKBP8	Q14318	412 aa		18.54	■□□□□ 0.56
SS18-222	ENST00000582792	PIM2	Q9P1W9	311 aa		18.54	■□□□□ 0.56
SS18-222	ENST00000582792	ADAMTS7	Q9UKP4	1686 aa		18.54	■□□□□ 0.56
SS18-222	ENST00000582792	C9orf131	Q5VYM1	1079 aa		18.53	■□□□□ 0.56
SS18-222	ENST00000582792	IL13	P35225	146 aa		18.52	■□□□□ 0.56
SS18-222	ENST00000582792	INTS5	Q6P9B9	1019 aa	Known RBP	18.52	■□□□□ 0.56
SS18-222	ENST00000582792	DALRD3	Q5D0E6	543 aa	Known RBP	18.51	■□□□□ 0.55
SS18-222	ENST00000582792	AKAP4	Q5JQC9	854 aa		18.51	■□□□□ 0.55
SS18-222	ENST00000582792	DNAJC5G	Q8N7S2	189 aa		18.51	■□□□□ 0.55
SS18-222	ENST00000582792	POLRMT	O00411	1230 aa	Known RBP	18.5	■□□□□ 0.55
SS18-222	ENST00000582792	TM4SF1	P30408	202 aa		18.5	■□□□□ 0.55
SS18-222	ENST00000582792	RBM46	Q8TBY0	533 aa	Known RBP	18.5	■□□□□ 0.55
SS18-222	ENST00000582792	SLC52A2	Q9HAB3	445 aa		18.5	■□□□□ 0.55
SS18-222	ENST00000582792	CHRNA5	P30532	468 aa		18.49	■□□□□ 0.55
SS18-222	ENST00000582792	KNSTRN	Q9Y448	316 aa		18.49	■□□□□ 0.55
SS18-222	ENST00000582792	MRC1	P22897	1456 aa		18.49	■□□□□ 0.55
SS18-222	ENST00000582792	DNAJC10	Q8IXB1	793 aa		18.48	■□□□□ 0.55
SS18-222	ENST00000582792	SOS1	Q07889	1333 aa	Predicted RBP	18.48	■□□□□ 0.55
SS18-222	ENST00000582792	KDM2B	Q8NHM5	1336 aa		18.48	■□□□□ 0.55
SS18-222	ENST00000582792	WDR90	Q96KV7	1748 aa		18.47	■□□□□ 0.55
SS18-222	ENST00000582792	ZPR1	O75312	459 aa		18.47	■□□□□ 0.55
SS18-222	ENST00000582792	USPL1	Q5W0Q7	1092 aa		18.47	■□□□□ 0.55
SS18-222	ENST00000582792	C16orf71	Q8IYS4	520 aa	Predicted RBP	18.47	■□□□□ 0.55
SS18-222	ENST00000582792	LGR6	Q9HBX8	967 aa		18.47	■□□□□ 0.55
SS18-222	ENST00000582792	RNF181	Q9P0P0	153 aa		18.47	■□□□□ 0.55
SS18-222	ENST00000582792	KCP	Q6ZWJ8	1503 aa		18.47	■□□□□ 0.55
SS18-222	ENST00000582792	CYP19A1	P11511	503 aa	Predicted RBP	18.46	■□□□□ 0.55
SS18-222	ENST00000582792	SBF1	O95248	1867 aa		18.46	■□□□□ 0.54

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