RNA–Protein interactions for RNA: ENST00000580222.5

LIMD2-209, Transcript of LIM domain containing 2, humanhuman

TSL 3

Gene LIMD2, Length 846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-209ENST00000580222 JMYQ8N9B5 988 aa27■■□□□ 1.91
LIMD2-209ENST00000580222 KLRG1Q96E93 195 aa27■■□□□ 1.91
LIMD2-209ENST00000580222 RBM46Q8TBY0 533 aaKnown RBP26.99■■□□□ 1.91
LIMD2-209ENST00000580222 ITGB4P16144 1822 aa26.98■■□□□ 1.91
LIMD2-209ENST00000580222 ATP6V1AP38606 617 aa26.98■■□□□ 1.91
LIMD2-209ENST00000580222 KCNA3P22001 575 aa26.97■■□□□ 1.91
LIMD2-209ENST00000580222 C9orf131Q5VYM1 1079 aa26.96■■□□□ 1.91
LIMD2-209ENST00000580222 SLC4A9Q96Q91 983 aa26.96■■□□□ 1.91
LIMD2-209ENST00000580222 ATG3Q9NT62 314 aa26.96■■□□□ 1.91
LIMD2-209ENST00000580222 EMILIN1Q9Y6C2 1016 aa26.96■■□□□ 1.91
LIMD2-209ENST00000580222 C10orf71Q711Q0 1435 aa26.96■■□□□ 1.91
LIMD2-209ENST00000580222 FLT4P35916 1363 aa26.96■■□□□ 1.91
LIMD2-209ENST00000580222 FCHSD2O94868 740 aa26.95■■□□□ 1.9
LIMD2-209ENST00000580222 TMOD3Q9NYL9 352 aa26.94■■□□□ 1.9
LIMD2-209ENST00000580222 N4BP2Q86UW6 1770 aaPredicted RBP26.94■■□□□ 1.9
LIMD2-209ENST00000580222 TMF1P82094 1093 aa26.93■■□□□ 1.9
LIMD2-209ENST00000580222 ARHGEF1Q92888 912 aaKnown RBP26.92■■□□□ 1.9
LIMD2-209ENST00000580222 WDR90Q96KV7 1748 aa26.92■■□□□ 1.9
LIMD2-209ENST00000580222 NCAPD2Q15021 1401 aa26.91■■□□□ 1.9
LIMD2-209ENST00000580222 TRAPPC3LQ5T215 181 aa26.91■■□□□ 1.9
LIMD2-209ENST00000580222 NLGN1Q8N2Q7 840 aa26.91■■□□□ 1.9
LIMD2-209ENST00000580222 SPG7Q9UQ90 795 aa26.91■■□□□ 1.9
LIMD2-209ENST00000580222 PKD1L3Q7Z443 1732 aa26.9■■□□□ 1.9
LIMD2-209ENST00000580222 KIF13BQ9NQT8 1826 aa26.9■■□□□ 1.9
LIMD2-209ENST00000580222 GYS1P13807 737 aa26.9■■□□□ 1.9
LIMD2-209ENST00000580222 FSTL1Q12841 308 aa26.89■■□□□ 1.9
LIMD2-209ENST00000580222 TNS4Q8IZW8 715 aa26.89■■□□□ 1.9
LIMD2-209ENST00000580222 RTCBQ9Y3I0 505 aaKnown RBP26.89■■□□□ 1.9
LIMD2-209ENST00000580222 KIF24Q5T7B8 1368 aa26.88■■□□□ 1.89
LIMD2-209ENST00000580222 PHKG2P15735 406 aa26.88■■□□□ 1.89
LIMD2-209ENST00000580222 EYA1Q99502 592 aa26.88■■□□□ 1.89
LIMD2-209ENST00000580222 RRAGCQ9HB90 399 aa26.88■■□□□ 1.89
LIMD2-209ENST00000580222 KCPQ6ZWJ8 1503 aa26.88■■□□□ 1.89
LIMD2-209ENST00000580222 KDRP35968 1356 aa26.87■■□□□ 1.89
LIMD2-209ENST00000580222 C16orf71Q8IYS4 520 aaPredicted RBP26.87■■□□□ 1.89
LIMD2-209ENST00000580222 CCDC87Q9NVE4 849 aa26.87■■□□□ 1.89
LIMD2-209ENST00000580222 CARD14Q9BXL6 1004 aa26.86■■□□□ 1.89
LIMD2-209ENST00000580222 PPM1GO15355 546 aaPredicted RBP26.85■■□□□ 1.89
LIMD2-209ENST00000580222 PRELPP51888 382 aa26.85■■□□□ 1.89
LIMD2-209ENST00000580222 DCAF5Q96JK2 942 aa26.84■■□□□ 1.89
LIMD2-209ENST00000580222 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.84■■□□□ 1.89
LIMD2-209ENST00000580222 ZEB1P37275 1124 aaPredicted RBP26.83■■□□□ 1.89
LIMD2-209ENST00000580222 IFNL2Q8IZJ0 200 aa26.83■■□□□ 1.89
LIMD2-209ENST00000580222 RNF181Q9P0P0 153 aa26.83■■□□□ 1.89
LIMD2-209ENST00000580222 PARP3Q9Y6F1 533 aa26.83■■□□□ 1.89
LIMD2-209ENST00000580222 RC3H1Q5TC82 1133 aaKnown RBP26.82■■□□□ 1.88
LIMD2-209ENST00000580222 RBM42Q9BTD8 480 aaKnown RBP26.82■■□□□ 1.88
LIMD2-209ENST00000580222 RPS6KA4O75676 772 aa26.81■■□□□ 1.88
LIMD2-209ENST00000580222 PIM2Q9P1W9 311 aa26.81■■□□□ 1.88
LIMD2-209ENST00000580222 C4AP0C0L4 1744 aa26.8■■□□□ 1.88
LIMD2-209ENST00000580222 RFC4P35249 363 aa26.8■■□□□ 1.88
LIMD2-209ENST00000580222 PLEKHG2Q9H7P9 1386 aa26.8■■□□□ 1.88
LIMD2-209ENST00000580222 ADRA2BP18089 450 aa26.79■■□□□ 1.88
LIMD2-209ENST00000580222 CHRNA5P30532 468 aa26.79■■□□□ 1.88
LIMD2-209ENST00000580222 DDR1Q08345 913 aa26.79■■□□□ 1.88
LIMD2-209ENST00000580222 SRP68Q9UHB9 627 aaKnown RBP26.79■■□□□ 1.88
LIMD2-209ENST00000580222 WASHC2AQ641Q2 1341 aa26.79■■□□□ 1.88
LIMD2-209ENST00000580222 KDM2BQ8NHM5 1336 aa26.79■■□□□ 1.88
LIMD2-209ENST00000580222 DALRD3Q5D0E6 543 aaKnown RBP26.78■■□□□ 1.88
LIMD2-209ENST00000580222 CNTNAP4Q9C0A0 1308 aa26.77■■□□□ 1.88
LIMD2-209ENST00000580222 FKBP8Q14318 412 aa26.77■■□□□ 1.88
LIMD2-209ENST00000580222 BRCA1P38398 1863 aaKnown RBP26.76■■□□□ 1.88
LIMD2-209ENST00000580222 SLC24A1O60721 1099 aa26.75■■□□□ 1.87
LIMD2-209ENST00000580222 SMC1BQ8NDV3 1235 aa26.74■■□□□ 1.87
LIMD2-209ENST00000580222 HSPA1AP0DMV8 641 aaKnown RBP26.73■■□□□ 1.87
LIMD2-209ENST00000580222 HSPA1BP0DMV9 641 aaKnown RBP26.73■■□□□ 1.87
LIMD2-209ENST00000580222 ERVV-2B6SEH9 535 aa26.72■■□□□ 1.87
LIMD2-209ENST00000580222 RASSF7Q02833 373 aa26.72■■□□□ 1.87
LIMD2-209ENST00000580222 POLKQ9UBT6 870 aa26.72■■□□□ 1.87
LIMD2-209ENST00000580222 KIF20BQ96Q89 1820 aa26.7■■□□□ 1.87
LIMD2-209ENST00000580222 EIF4A2Q14240 407 aaKnown RBP26.7■■□□□ 1.86
LIMD2-209ENST00000580222 ARFGEF1Q9Y6D6 1849 aa26.69■■□□□ 1.86
LIMD2-209ENST00000580222 USP42Q9H9J4 1324 aaKnown RBP26.68■■□□□ 1.86
LIMD2-209ENST00000580222 PTCD1O75127 700 aaKnown RBP26.68■■□□□ 1.86
LIMD2-209ENST00000580222 CRKLP46109 303 aaKnown RBP26.68■■□□□ 1.86
LIMD2-209ENST00000580222 POLRMTO00411 1230 aaKnown RBP26.67■■□□□ 1.86
LIMD2-209ENST00000580222 TM4SF1P30408 202 aa26.67■■□□□ 1.86
LIMD2-209ENST00000580222 MYH14Q7Z406 1995 aaKnown RBP26.67■■□□□ 1.86
LIMD2-209ENST00000580222 KDM6AO15550 1401 aaPredicted RBP26.66■■□□□ 1.86
LIMD2-209ENST00000580222 COL5A3P25940 1745 aaPredicted RBP26.66■■□□□ 1.86
LIMD2-209ENST00000580222 ZNF831Q5JPB2 1677 aa26.65■■□□□ 1.86
LIMD2-209ENST00000580222 CABP4P57796 275 aa26.64■■□□□ 1.86
LIMD2-209ENST00000580222 ANKRD26Q9UPS8 1709 aa26.63■■□□□ 1.85
LIMD2-209ENST00000580222 GLTPD2A6NH11 291 aa26.63■■□□□ 1.85
LIMD2-209ENST00000580222 VEGFAP15692 232 aaPredicted RBP26.63■■□□□ 1.85
LIMD2-209ENST00000580222 INTS5Q6P9B9 1019 aaKnown RBP26.63■■□□□ 1.85
LIMD2-209ENST00000580222 POTECB2RU33 542 aa26.62■■□□□ 1.85
LIMD2-209ENST00000580222 TNRC6CQ9HCJ0 1690 aaKnown RBP26.61■■□□□ 1.85
LIMD2-209ENST00000580222 TNNT2P45379 298 aaPredicted RBP26.61■■□□□ 1.85
LIMD2-209ENST00000580222 EIF4G2P78344 907 aaKnown RBP eCLIP26.6■■□□□ 1.85
LIMD2-209ENST00000580222 ZNF530Q6P9A1 599 aaPredicted RBP26.6■■□□□ 1.85
LIMD2-209ENST00000580222 SBF1O95248 1867 aa26.59■■□□□ 1.85
LIMD2-209ENST00000580222 HSP90AB1P08238 724 aaKnown RBP26.59■■□□□ 1.85
LIMD2-209ENST00000580222 LMNB1P20700 586 aa26.59■■□□□ 1.85
LIMD2-209ENST00000580222 NFATC2IPQ8NCF5 419 aa26.59■■□□□ 1.85
LIMD2-209ENST00000580222 USPL1Q5W0Q7 1092 aa26.58■■□□□ 1.85
LIMD2-209ENST00000580222 PLEKHO1Q53GL0 409 aaPredicted RBP26.57■■□□□ 1.84
LIMD2-209ENST00000580222 ZC3H4Q9UPT8 1303 aaKnown RBP26.57■■□□□ 1.84
LIMD2-209ENST00000580222 CDCA8Q53HL2 280 aa26.56■■□□□ 1.84
LIMD2-209ENST00000580222 NFKBIEO00221 500 aa26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms