RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 WWC1Q8IX03 1113 aa10.86□□□□□ -0.67
SMCHD1-202ENST00000577300 GTPBP3Q969Y2 492 aaKnown RBP10.86□□□□□ -0.67
SMCHD1-202ENST00000577300 STAU1O95793 577 aaKnown RBP10.85□□□□□ -0.67
SMCHD1-202ENST00000577300 SCNN1DP51172 638 aa10.85□□□□□ -0.67
SMCHD1-202ENST00000577300 C4orf17Q53FE4 359 aa10.85□□□□□ -0.67
SMCHD1-202ENST00000577300 PPARGC1BQ86YN6 1023 aaKnown RBP10.85□□□□□ -0.67
SMCHD1-202ENST00000577300 TRERF1Q96PN7 1200 aa10.85□□□□□ -0.67
SMCHD1-202ENST00000577300 NUCKS1Q9H1E3 243 aaKnown RBP10.85□□□□□ -0.67
SMCHD1-202ENST00000577300 ALG2Q9H553 416 aa10.85□□□□□ -0.67
SMCHD1-202ENST00000577300 PHKA2P46019 1235 aa10.84□□□□□ -0.67
SMCHD1-202ENST00000577300 TLR1Q15399 786 aa10.84□□□□□ -0.67
SMCHD1-202ENST00000577300 RHBDD1Q8TEB9 315 aa10.84□□□□□ -0.67
SMCHD1-202ENST00000577300 POM121Q96HA1 1249 aa10.84□□□□□ -0.67
SMCHD1-202ENST00000577300 RAD21O60216 631 aa10.83□□□□□ -0.68
SMCHD1-202ENST00000577300 INHAP05111 366 aa10.83□□□□□ -0.68
SMCHD1-202ENST00000577300 GDF10P55107 478 aa10.83□□□□□ -0.68
SMCHD1-202ENST00000577300 LYPD4Q6UWN0 246 aa10.83□□□□□ -0.68
SMCHD1-202ENST00000577300 PIK3CDO00329 1044 aa10.82□□□□□ -0.68
SMCHD1-202ENST00000577300 LBRQ14739 615 aaKnown RBP10.82□□□□□ -0.68
SMCHD1-202ENST00000577300 NFATC2IPQ8NCF5 419 aa10.82□□□□□ -0.68
SMCHD1-202ENST00000577300 IGF1RP08069 1367 aa10.81□□□□□ -0.68
SMCHD1-202ENST00000577300 RNF225M0QZC1 329 aaPredicted RBP10.81□□□□□ -0.68
SMCHD1-202ENST00000577300 LZTS3O60299 673 aaPredicted RBP10.81□□□□□ -0.68
SMCHD1-202ENST00000577300 THBS1P07996 1170 aa10.81□□□□□ -0.68
SMCHD1-202ENST00000577300 CELA2BP08218 269 aaPredicted RBP10.81□□□□□ -0.68
SMCHD1-202ENST00000577300 GSK3AP49840 483 aa10.81□□□□□ -0.68
SMCHD1-202ENST00000577300 GPAMQ9HCL2 828 aa10.81□□□□□ -0.68
SMCHD1-202ENST00000577300 CFHR5Q9BXR6 569 aa10.8□□□□□ -0.68
SMCHD1-202ENST00000577300 UBTFP17480 764 aaKnown RBP10.79□□□□□ -0.68
SMCHD1-202ENST00000577300 MSX1P28360 303 aa10.79□□□□□ -0.68
SMCHD1-202ENST00000577300 MAP3K10Q02779 954 aa10.79□□□□□ -0.68
SMCHD1-202ENST00000577300 EML3Q32P44 896 aa10.79□□□□□ -0.68
SMCHD1-202ENST00000577300 TMEM229AB2RXF0 380 aa10.78□□□□□ -0.68
SMCHD1-202ENST00000577300 SKIP12755 728 aa10.78□□□□□ -0.68
SMCHD1-202ENST00000577300 MX2P20592 715 aa10.78□□□□□ -0.68
SMCHD1-202ENST00000577300 SMTNP53814 917 aa10.78□□□□□ -0.68
SMCHD1-202ENST00000577300 SLC4A9Q96Q91 983 aa10.78□□□□□ -0.68
SMCHD1-202ENST00000577300 NSFL1CQ9UNZ2 370 aaKnown RBP10.78□□□□□ -0.68
SMCHD1-202ENST00000577300 PCDHGA11Q9Y5H2 935 aa10.78□□□□□ -0.68
SMCHD1-202ENST00000577300 CSB-PGBD3P0DP91 1061 aa10.77□□□□□ -0.69
SMCHD1-202ENST00000577300 UBAP2LQ14157 1087 aaKnown RBP10.77□□□□□ -0.69
SMCHD1-202ENST00000577300 PGBD3Q8N328 593 aa10.77□□□□□ -0.69
SMCHD1-202ENST00000577300 TMEM132AQ24JP5 1023 aa10.76□□□□□ -0.69
SMCHD1-202ENST00000577300 CRISPLD1Q9H336 500 aa10.76□□□□□ -0.69
SMCHD1-202ENST00000577300 RUBCNLQ9H714 662 aa10.76□□□□□ -0.69
SMCHD1-202ENST00000577300 ENAMQ9NRM1 1142 aa10.76□□□□□ -0.69
SMCHD1-202ENST00000577300 PHF24Q9UPV7 400 aa10.76□□□□□ -0.69
SMCHD1-202ENST00000577300 NOD1Q9Y239 953 aa10.76□□□□□ -0.69
SMCHD1-202ENST00000577300 MARSP56192 900 aaKnown RBP10.75□□□□□ -0.69
SMCHD1-202ENST00000577300 MTFR1Q15390 333 aa10.75□□□□□ -0.69
SMCHD1-202ENST00000577300 EFHC2Q5JST6 749 aa10.75□□□□□ -0.69
SMCHD1-202ENST00000577300 NIFKQ9BYG3 293 aaKnown RBP10.75□□□□□ -0.69
SMCHD1-202ENST00000577300 LRRC4BQ9NT99 713 aa10.75□□□□□ -0.69
SMCHD1-202ENST00000577300 BCRP11274 1271 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 MAP2K3P46734 347 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 PLA2G4AP47712 749 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 RASSF7Q02833 373 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 NCOA4Q13772 614 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 TBC1D9Q6ZT07 1266 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 C1orf216Q8TAB5 229 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 ACDQ96AP0 544 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 SERTAD1Q9UHV2 236 aa10.74□□□□□ -0.69
SMCHD1-202ENST00000577300 A6NJY4 79 aa10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 POM121CA8CG34 1229 aa10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 CDK2AP1O14519 115 aa10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 GTF2IP78347 998 aa10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 ZNF295-AS1Q8N0V1 137 aa10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 TMEM151AQ8N4L1 468 aa10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 SCARF2Q96GP6 870 aaPredicted RBP10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 IQSEC3Q9UPP2 1182 aaPredicted RBP10.73□□□□□ -0.69
SMCHD1-202ENST00000577300 USP17L5A8MUK1 530 aa10.72□□□□□ -0.69
SMCHD1-202ENST00000577300 ADAMTS19Q8TE59 1207 aa10.72□□□□□ -0.69
SMCHD1-202ENST00000577300 ATXN7L1Q9ULK2 861 aaPredicted RBP10.72□□□□□ -0.69
SMCHD1-202ENST00000577300 BACH1O14867 736 aa10.71□□□□□ -0.69
SMCHD1-202ENST00000577300 GDF11O95390 407 aa10.71□□□□□ -0.69
SMCHD1-202ENST00000577300 NDFIP2Q9NV92 336 aa10.71□□□□□ -0.69
SMCHD1-202ENST00000577300 ATP4AP20648 1035 aa10.7□□□□□ -0.7
SMCHD1-202ENST00000577300 KANK3Q6NY19 840 aa10.69□□□□□ -0.7
SMCHD1-202ENST00000577300 FIGNL1Q6PIW4 674 aa10.69□□□□□ -0.7
SMCHD1-202ENST00000577300 NLRP8Q86W28 1048 aa10.69□□□□□ -0.7
SMCHD1-202ENST00000577300 PLEKHM2Q8IWE5 1019 aa10.69□□□□□ -0.7
SMCHD1-202ENST00000577300 OXCT2Q9BYC2 517 aaPredicted RBP10.69□□□□□ -0.7
SMCHD1-202ENST00000577300 OIP5O43482 229 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 IRS1P35568 1242 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 HDGFL1Q5TGJ6 251 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 DEPDC4Q8N2C3 294 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 AIDAQ96BJ3 306 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 DNAAF2Q9NVR5 837 aaKnown RBP10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 ZNF358Q9NW07 568 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 ZDHHC3Q9NYG2 299 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 USP3Q9Y6I4 520 aa10.68□□□□□ -0.7
SMCHD1-202ENST00000577300 BNIP3LO60238 219 aa10.67□□□□□ -0.7
SMCHD1-202ENST00000577300 PSME1Q06323 249 aa10.67□□□□□ -0.7
SMCHD1-202ENST00000577300 NBPF1Q3BBV0 1214 aa10.67□□□□□ -0.7
SMCHD1-202ENST00000577300 TRIM50Q86XT4 487 aa10.67□□□□□ -0.7
SMCHD1-202ENST00000577300 KLRG1Q96E93 195 aa10.67□□□□□ -0.7
SMCHD1-202ENST00000577300 ABHD17AQ96GS6 310 aa10.67□□□□□ -0.7
SMCHD1-202ENST00000577300 UCN2Q96RP3 112 aa10.67□□□□□ -0.7
SMCHD1-202ENST00000577300 FGFR3P22607 806 aa10.66□□□□□ -0.7
SMCHD1-202ENST00000577300 KCTD17Q8N5Z5 321 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms