RNA–Protein interactions for RNA: ENST00000575185.1

SPNS3-203, Transcript of sphingolipid transporter 3 (putative), humanhuman

TSL 5

Gene SPNS3, Length 496 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPNS3-203ENST00000575185 ATP6V1AP38606 617 aa28.82■■■□□ 2.2
SPNS3-203ENST00000575185 WASHC2AQ641Q2 1341 aa28.82■■■□□ 2.2
SPNS3-203ENST00000575185 COL5A3P25940 1745 aaPredicted RBP28.82■■■□□ 2.2
SPNS3-203ENST00000575185 PHKG2P15735 406 aa28.81■■■□□ 2.2
SPNS3-203ENST00000575185 KIF3CO14782 793 aa28.8■■■□□ 2.2
SPNS3-203ENST00000575185 MMP10P09238 476 aa28.8■■■□□ 2.2
SPNS3-203ENST00000575185 ATG3Q9NT62 314 aa28.8■■■□□ 2.2
SPNS3-203ENST00000575185 KDRP35968 1356 aa28.79■■■□□ 2.2
SPNS3-203ENST00000575185 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.79■■■□□ 2.2
SPNS3-203ENST00000575185 ZNF831Q5JPB2 1677 aa28.78■■■□□ 2.2
SPNS3-203ENST00000575185 IFNL2Q8IZJ0 200 aa28.78■■■□□ 2.2
SPNS3-203ENST00000575185 BRCA1P38398 1863 aaKnown RBP28.78■■■□□ 2.2
SPNS3-203ENST00000575185 C4AP0C0L4 1744 aa28.77■■■□□ 2.2
SPNS3-203ENST00000575185 POLKQ9UBT6 870 aa28.76■■■□□ 2.19
SPNS3-203ENST00000575185 SLC4A9Q96Q91 983 aa28.75■■■□□ 2.19
SPNS3-203ENST00000575185 C10orf71Q711Q0 1435 aa28.75■■■□□ 2.19
SPNS3-203ENST00000575185 EIF4A2Q14240 407 aaKnown RBP28.73■■■□□ 2.19
SPNS3-203ENST00000575185 MYH14Q7Z406 1995 aaKnown RBP28.73■■■□□ 2.19
SPNS3-203ENST00000575185 A0A0G2JLW4 131 aa28.71■■■□□ 2.19
SPNS3-203ENST00000575185 TNNT2P45379 298 aaPredicted RBP28.71■■■□□ 2.19
SPNS3-203ENST00000575185 BCS1LQ9Y276 419 aa28.71■■■□□ 2.19
SPNS3-203ENST00000575185 RTCBQ9Y3I0 505 aaKnown RBP28.7■■■□□ 2.18
SPNS3-203ENST00000575185 TRAPPC3LQ5T215 181 aa28.69■■■□□ 2.18
SPNS3-203ENST00000575185 RBM42Q9BTD8 480 aaKnown RBP28.69■■■□□ 2.18
SPNS3-203ENST00000575185 KDM6AO15550 1401 aaPredicted RBP28.68■■■□□ 2.18
SPNS3-203ENST00000575185 ARFGEF1Q9Y6D6 1849 aa28.67■■■□□ 2.18
SPNS3-203ENST00000575185 TGFB2P61812 414 aa28.67■■■□□ 2.18
SPNS3-203ENST00000575185 ARHGEF1Q92888 912 aaKnown RBP28.67■■■□□ 2.18
SPNS3-203ENST00000575185 GYS1P13807 737 aa28.65■■■□□ 2.18
SPNS3-203ENST00000575185 DPEP1P16444 411 aa28.65■■■□□ 2.18
SPNS3-203ENST00000575185 NLGN1Q8N2Q7 840 aa28.65■■■□□ 2.18
SPNS3-203ENST00000575185 POLR3GLQ9BT43 218 aa28.64■■■□□ 2.18
SPNS3-203ENST00000575185 CNTNAP4Q9C0A0 1308 aa28.64■■■□□ 2.17
SPNS3-203ENST00000575185 PLEKHG2Q9H7P9 1386 aa28.63■■■□□ 2.17
SPNS3-203ENST00000575185 TJP1Q07157 1748 aa28.63■■■□□ 2.17
SPNS3-203ENST00000575185 ERVV-2B6SEH9 535 aa28.63■■■□□ 2.17
SPNS3-203ENST00000575185 ARHGAP27Q6ZUM4 889 aa28.63■■■□□ 2.17
SPNS3-203ENST00000575185 NMRK2Q9NPI5 230 aa28.63■■■□□ 2.17
SPNS3-203ENST00000575185 CCDC87Q9NVE4 849 aa28.62■■■□□ 2.17
SPNS3-203ENST00000575185 WDR90Q96KV7 1748 aa28.62■■■□□ 2.17
SPNS3-203ENST00000575185 FCHSD2O94868 740 aa28.61■■■□□ 2.17
SPNS3-203ENST00000575185 ADRA2BP18089 450 aa28.61■■■□□ 2.17
SPNS3-203ENST00000575185 RC3H1Q5TC82 1133 aaKnown RBP28.61■■■□□ 2.17
SPNS3-203ENST00000575185 DCAF5Q96JK2 942 aa28.61■■■□□ 2.17
SPNS3-203ENST00000575185 RPS6KA4O75676 772 aa28.6■■■□□ 2.17
SPNS3-203ENST00000575185 RFC4P35249 363 aa28.6■■■□□ 2.17
SPNS3-203ENST00000575185 APLP1P51693 650 aa28.6■■■□□ 2.17
SPNS3-203ENST00000575185 TOMM70O94826 608 aa28.59■■■□□ 2.17
SPNS3-203ENST00000575185 ZNF530Q6P9A1 599 aaPredicted RBP28.59■■■□□ 2.17
SPNS3-203ENST00000575185 PARP3Q9Y6F1 533 aa28.59■■■□□ 2.17
SPNS3-203ENST00000575185 KCNA3P22001 575 aa28.58■■■□□ 2.17
SPNS3-203ENST00000575185 HSP90AB1P08238 724 aaKnown RBP28.57■■■□□ 2.16
SPNS3-203ENST00000575185 ADAMTS7Q9UKP4 1686 aa28.57■■■□□ 2.16
SPNS3-203ENST00000575185 PTCD1O75127 700 aaKnown RBP28.56■■■□□ 2.16
SPNS3-203ENST00000575185 CABP4P57796 275 aa28.56■■■□□ 2.16
SPNS3-203ENST00000575185 PLEKHO1Q53GL0 409 aaPredicted RBP28.56■■■□□ 2.16
SPNS3-203ENST00000575185 SRP68Q9UHB9 627 aaKnown RBP28.56■■■□□ 2.16
SPNS3-203ENST00000575185 SCN11AQ9UI33 1791 aa28.55■■■□□ 2.16
SPNS3-203ENST00000575185 AEBP1Q8IUX7 1158 aa28.55■■■□□ 2.16
SPNS3-203ENST00000575185 DNAJC5GQ8N7S2 189 aa28.55■■■□□ 2.16
SPNS3-203ENST00000575185 C9orf131Q5VYM1 1079 aa28.54■■■□□ 2.16
SPNS3-203ENST00000575185 CRKLP46109 303 aaKnown RBP28.53■■■□□ 2.16
SPNS3-203ENST00000575185 KCPQ6ZWJ8 1503 aa28.53■■■□□ 2.16
SPNS3-203ENST00000575185 SBF1O95248 1867 aa28.53■■■□□ 2.16
SPNS3-203ENST00000575185 DDR1Q08345 913 aa28.52■■■□□ 2.16
SPNS3-203ENST00000575185 FKBP8Q14318 412 aa28.52■■■□□ 2.16
SPNS3-203ENST00000575185 USP42Q9H9J4 1324 aaKnown RBP28.51■■■□□ 2.15
SPNS3-203ENST00000575185 VIRMAQ69YN4 1812 aaKnown RBP28.5■■■□□ 2.15
SPNS3-203ENST00000575185 MTHFSP49914 203 aa28.5■■■□□ 2.15
SPNS3-203ENST00000575185 HTRA3P83110 453 aa28.49■■■□□ 2.15
SPNS3-203ENST00000575185 AMOTQ4VCS5 1084 aa28.49■■■□□ 2.15
SPNS3-203ENST00000575185 NFATC2IPQ8NCF5 419 aa28.49■■■□□ 2.15
SPNS3-203ENST00000575185 PIM2Q9P1W9 311 aa28.49■■■□□ 2.15
SPNS3-203ENST00000575185 TNRC6CQ9HCJ0 1690 aaKnown RBP28.48■■■□□ 2.15
SPNS3-203ENST00000575185 C1orf141Q5JVX7 400 aa28.48■■■□□ 2.15
SPNS3-203ENST00000575185 AFDNP55196 1824 aaKnown RBP28.48■■■□□ 2.15
SPNS3-203ENST00000575185 PCNTO95613 3336 aa28.47■■■□□ 2.15
SPNS3-203ENST00000575185 CHRNA5P30532 468 aa28.47■■■□□ 2.15
SPNS3-203ENST00000575185 RBM46Q8TBY0 533 aaKnown RBP28.46■■■□□ 2.15
SPNS3-203ENST00000575185 PANK3Q9H999 370 aa28.46■■■□□ 2.15
SPNS3-203ENST00000575185 CLSPNQ9HAW4 1339 aa28.45■■■□□ 2.15
SPNS3-203ENST00000575185 DALRD3Q5D0E6 543 aaKnown RBP28.45■■■□□ 2.14
SPNS3-203ENST00000575185 RNF181Q9P0P0 153 aa28.45■■■□□ 2.14
SPNS3-203ENST00000575185 SULT6B1Q6IMI4 303 aa28.43■■■□□ 2.14
SPNS3-203ENST00000575185 INTS5Q6P9B9 1019 aaKnown RBP28.43■■■□□ 2.14
SPNS3-203ENST00000575185 C16orf71Q8IYS4 520 aaPredicted RBP28.43■■■□□ 2.14
SPNS3-203ENST00000575185 DLEC1Q9Y238 1755 aa28.42■■■□□ 2.14
SPNS3-203ENST00000575185 POLRMTO00411 1230 aaKnown RBP28.42■■■□□ 2.14
SPNS3-203ENST00000575185 NRXN2Q9P2S2 1712 aa28.4■■■□□ 2.14
SPNS3-203ENST00000575185 DNAJC10Q8IXB1 793 aa28.4■■■□□ 2.14
SPNS3-203ENST00000575185 KDM2BQ8NHM5 1336 aa28.4■■■□□ 2.14
SPNS3-203ENST00000575185 USPL1Q5W0Q7 1092 aa28.39■■■□□ 2.14
SPNS3-203ENST00000575185 MORC1Q86VD1 984 aa28.39■■■□□ 2.14
SPNS3-203ENST00000575185 RRAGCQ9HB90 399 aa28.39■■■□□ 2.14
SPNS3-203ENST00000575185 TIMELESSQ9UNS1 1208 aa28.39■■■□□ 2.14
SPNS3-203ENST00000575185 TM4SF1P30408 202 aa28.38■■■□□ 2.13
SPNS3-203ENST00000575185 RASSF7Q02833 373 aa28.38■■■□□ 2.13
SPNS3-203ENST00000575185 TIAM2Q8IVF5 1701 aa28.38■■■□□ 2.13
SPNS3-203ENST00000575185 HSPA5P11021 654 aaKnown RBP28.37■■■□□ 2.13
SPNS3-203ENST00000575185 KLRG1Q96E93 195 aa28.37■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms