RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 AK7Q96M32 723 aa24.72■■□□□ 1.55
CHD3-214ENST00000572579 KDRP35968 1356 aa24.71■■□□□ 1.55
CHD3-214ENST00000572579 PHF14O94880 888 aa24.71■■□□□ 1.55
CHD3-214ENST00000572579 AMOTQ4VCS5 1084 aa24.71■■□□□ 1.55
CHD3-214ENST00000572579 FLAD1Q8NFF5 587 aa24.71■■□□□ 1.55
CHD3-214ENST00000572579 C4BP0C0L5 1744 aa24.71■■□□□ 1.55
CHD3-214ENST00000572579 CC2D1BQ5T0F9 858 aaKnown RBP24.7■■□□□ 1.54
CHD3-214ENST00000572579 TAF1LQ8IZX4 1826 aa24.7■■□□□ 1.54
CHD3-214ENST00000572579 GPR162Q16538 588 aa24.68■■□□□ 1.54
CHD3-214ENST00000572579 HSP90AB1P08238 724 aaKnown RBP24.67■■□□□ 1.54
CHD3-214ENST00000572579 YBX3P16989 372 aaKnown RBP eCLIP24.66■■□□□ 1.54
CHD3-214ENST00000572579 HMGB2P26583 209 aaKnown RBP24.66■■□□□ 1.54
CHD3-214ENST00000572579 SSFA2P28290 1259 aa24.66■■□□□ 1.54
CHD3-214ENST00000572579 ZNF784Q8NCA9 323 aaPredicted RBP24.66■■□□□ 1.54
CHD3-214ENST00000572579 GNPATO15228 680 aa24.65■■□□□ 1.54
CHD3-214ENST00000572579 CABP4P57796 275 aa24.65■■□□□ 1.54
CHD3-214ENST00000572579 NFATC2IPQ8NCF5 419 aa24.65■■□□□ 1.54
CHD3-214ENST00000572579 HMOX1P09601 288 aa24.64■■□□□ 1.54
CHD3-214ENST00000572579 RBM42Q9BTD8 480 aaKnown RBP24.64■■□□□ 1.54
CHD3-214ENST00000572579 LGR6Q9HBX8 967 aa24.64■■□□□ 1.54
CHD3-214ENST00000572579 CNGB1Q14028 1251 aaPredicted RBP24.61■■□□□ 1.53
CHD3-214ENST00000572579 C1orf141Q5JVX7 400 aa24.61■■□□□ 1.53
CHD3-214ENST00000572579 PELP1Q8IZL8 1130 aaKnown RBP24.61■■□□□ 1.53
CHD3-214ENST00000572579 CD2APQ9Y5K6 639 aa24.61■■□□□ 1.53
CHD3-214ENST00000572579 UBR3Q6ZT12 1888 aa24.61■■□□□ 1.53
CHD3-214ENST00000572579 NPC1L1Q9UHC9 1359 aa24.59■■□□□ 1.53
CHD3-214ENST00000572579 PTCD1O75127 700 aaKnown RBP24.59■■□□□ 1.53
CHD3-214ENST00000572579 RC3H1Q5TC82 1133 aaKnown RBP24.59■■□□□ 1.53
CHD3-214ENST00000572579 DIAPH1O60610 1272 aaKnown RBP24.58■■□□□ 1.53
CHD3-214ENST00000572579 MTHFSDQ2M296 383 aaKnown RBP24.58■■□□□ 1.53
CHD3-214ENST00000572579 AKAP4Q5JQC9 854 aa24.58■■□□□ 1.53
CHD3-214ENST00000572579 ARHGEF1Q92888 912 aaKnown RBP24.57■■□□□ 1.52
CHD3-214ENST00000572579 TRAPPC3LQ5T215 181 aa24.56■■□□□ 1.52
CHD3-214ENST00000572579 RTCBQ9Y3I0 505 aaKnown RBP24.56■■□□□ 1.52
CHD3-214ENST00000572579 CNTNAP4Q9C0A0 1308 aa24.56■■□□□ 1.52
CHD3-214ENST00000572579 RNMTO43148 476 aaKnown RBP24.55■■□□□ 1.52
CHD3-214ENST00000572579 RPS6KA4O75676 772 aa24.55■■□□□ 1.52
CHD3-214ENST00000572579 COL3A1P02461 1466 aaPredicted RBP24.55■■□□□ 1.52
CHD3-214ENST00000572579 SLC52A2Q9HAB3 445 aa24.54■■□□□ 1.52
CHD3-214ENST00000572579 MMP10P09238 476 aa24.53■■□□□ 1.52
CHD3-214ENST00000572579 SLC39A6Q13433 755 aa24.52■■□□□ 1.52
CHD3-214ENST00000572579 INTS5Q6P9B9 1019 aaKnown RBP24.52■■□□□ 1.52
CHD3-214ENST00000572579 GYS1P13807 737 aa24.51■■□□□ 1.51
CHD3-214ENST00000572579 CRKLP46109 303 aaKnown RBP24.51■■□□□ 1.51
CHD3-214ENST00000572579 WWC3Q9ULE0 1092 aa24.51■■□□□ 1.51
CHD3-214ENST00000572579 GRIN3BO60391 1043 aa24.49■■□□□ 1.51
CHD3-214ENST00000572579 ADRA2BP18089 450 aa24.49■■□□□ 1.51
CHD3-214ENST00000572579 DNAJC10Q8IXB1 793 aa24.49■■□□□ 1.51
CHD3-214ENST00000572579 ZNF831Q5JPB2 1677 aa24.49■■□□□ 1.51
CHD3-214ENST00000572579 MYH14Q7Z406 1995 aaKnown RBP24.48■■□□□ 1.51
CHD3-214ENST00000572579 SRP68Q9UHB9 627 aaKnown RBP24.48■■□□□ 1.51
CHD3-214ENST00000572579 NLGN1Q8N2Q7 840 aa24.47■■□□□ 1.51
CHD3-214ENST00000572579 U2SURPO15042 1029 aaKnown RBP24.46■■□□□ 1.51
CHD3-214ENST00000572579 RFC4P35249 363 aa24.46■■□□□ 1.51
CHD3-214ENST00000572579 IL17REQ8NFR9 667 aa24.46■■□□□ 1.51
CHD3-214ENST00000572579 COL5A3P25940 1745 aaPredicted RBP24.46■■□□□ 1.51
CHD3-214ENST00000572579 MRC1P22897 1456 aa24.45■■□□□ 1.51
CHD3-214ENST00000572579 PHACTR3Q96KR7 559 aa24.45■■□□□ 1.5
CHD3-214ENST00000572579 CHD4Q14839 1912 aa24.45■■□□□ 1.5
CHD3-214ENST00000572579 SCN11AQ9UI33 1791 aa24.44■■□□□ 1.5
CHD3-214ENST00000572579 CYP19A1P11511 503 aaPredicted RBP24.43■■□□□ 1.5
CHD3-214ENST00000572579 FKBP8Q14318 412 aa24.43■■□□□ 1.5
CHD3-214ENST00000572579 PPP2R1AP30153 589 aa24.42■■□□□ 1.5
CHD3-214ENST00000572579 USP42Q9H9J4 1324 aaKnown RBP24.41■■□□□ 1.5
CHD3-214ENST00000572579 A0A0G2JLW4 131 aa24.41■■□□□ 1.5
CHD3-214ENST00000572579 DDR1Q08345 913 aa24.41■■□□□ 1.5
CHD3-214ENST00000572579 TJP1Q07157 1748 aa24.41■■□□□ 1.5
CHD3-214ENST00000572579 KCPQ6ZWJ8 1503 aa24.4■■□□□ 1.5
CHD3-214ENST00000572579 ADAMTS7Q9UKP4 1686 aa24.4■■□□□ 1.5
CHD3-214ENST00000572579 PXDNLA1KZ92 1463 aa24.4■■□□□ 1.5
CHD3-214ENST00000572579 RSPH6AQ9H0K4 717 aa24.4■■□□□ 1.5
CHD3-214ENST00000572579 CCDC87Q9NVE4 849 aa24.4■■□□□ 1.5
CHD3-214ENST00000572579 SOS1Q07889 1333 aaPredicted RBP24.39■■□□□ 1.5
CHD3-214ENST00000572579 C10orf71Q711Q0 1435 aa24.38■■□□□ 1.49
CHD3-214ENST00000572579 KCNA3P22001 575 aa24.38■■□□□ 1.49
CHD3-214ENST00000572579 CICQ96RK0 1608 aaPredicted RBP24.38■■□□□ 1.49
CHD3-214ENST00000572579 DPEP1P16444 411 aa24.37■■□□□ 1.49
CHD3-214ENST00000572579 TM4SF1P30408 202 aa24.37■■□□□ 1.49
CHD3-214ENST00000572579 PRKAR2BP31323 418 aa24.37■■□□□ 1.49
CHD3-214ENST00000572579 TGFB2P61812 414 aa24.37■■□□□ 1.49
CHD3-214ENST00000572579 ZBTB1Q9Y2K1 713 aa24.37■■□□□ 1.49
CHD3-214ENST00000572579 GNAT3A8MTJ3 354 aa24.36■■□□□ 1.49
CHD3-214ENST00000572579 GAS2L2Q8NHY3 880 aa24.36■■□□□ 1.49
CHD3-214ENST00000572579 C1QTNF8P60827 252 aa24.35■■□□□ 1.49
CHD3-214ENST00000572579 USPL1Q5W0Q7 1092 aa24.35■■□□□ 1.49
CHD3-214ENST00000572579 VSIG10Q8N0Z9 540 aa24.35■■□□□ 1.49
CHD3-214ENST00000572579 ZNF496Q96IT1 587 aaPredicted RBP24.35■■□□□ 1.49
CHD3-214ENST00000572579 BCL2L12Q9HB09 334 aa24.35■■□□□ 1.49
CHD3-214ENST00000572579 PARP3Q9Y6F1 533 aa24.35■■□□□ 1.49
CHD3-214ENST00000572579 KCNQ3O43525 872 aa24.34■■□□□ 1.49
CHD3-214ENST00000572579 C4AP0C0L4 1744 aa24.33■■□□□ 1.49
CHD3-214ENST00000572579 ADCY9O60503 1353 aa24.33■■□□□ 1.49
CHD3-214ENST00000572579 CEMIPQ8WUJ3 1361 aa24.33■■□□□ 1.49
CHD3-214ENST00000572579 POLRMTO00411 1230 aaKnown RBP24.33■■□□□ 1.49
CHD3-214ENST00000572579 KIAA1551Q9HCM1 1747 aa24.32■■□□□ 1.48
CHD3-214ENST00000572579 ZNF790Q6PG37 636 aa24.32■■□□□ 1.48
CHD3-214ENST00000572579 CFAP53Q96M91 514 aa24.32■■□□□ 1.48
CHD3-214ENST00000572579 ATP10DQ9P241 1426 aa24.32■■□□□ 1.48
CHD3-214ENST00000572579 NARFQ9UHQ1 456 aa24.31■■□□□ 1.48
CHD3-214ENST00000572579 U2AF1L5P0DN76 240 aaPredicted RBP24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms