RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ATP5J2-PTCD1G3V325 749 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 ALDH1A1P00352 501 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 MFAP1P55081 439 aaKnown RBP9.13□□□□□ -0.95
VPS53-212ENST00000572259 USP4Q13107 963 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 NR5A1Q13285 461 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 TRAF7Q6Q0C0 670 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 WASF2Q9Y6W5 498 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 FHOD3Q2V2M9 1422 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 FMN1Q68DA7 1419 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 RAPGEF6Q8TEU7 1601 aa9.13□□□□□ -0.95
VPS53-212ENST00000572259 DIP2BQ9P265 1576 aa9.12□□□□□ -0.95
VPS53-212ENST00000572259 TTC24A2A3L6 582 aaPredicted RBP9.12□□□□□ -0.95
VPS53-212ENST00000572259 PLEKHD1A6NEE1 506 aa9.12□□□□□ -0.95
VPS53-212ENST00000572259 ERVH48-1M5A8F1 160 aa9.12□□□□□ -0.95
VPS53-212ENST00000572259 GRM5P41594 1212 aa9.12□□□□□ -0.95
VPS53-212ENST00000572259 RBM25P49756 843 aaKnown RBP9.12□□□□□ -0.95
VPS53-212ENST00000572259 KANK4Q5T7N3 995 aaPredicted RBP9.12□□□□□ -0.95
VPS53-212ENST00000572259 LARP1Q6PKG0 1096 aaKnown RBP9.12□□□□□ -0.95
VPS53-212ENST00000572259 TRIM50Q86XT4 487 aa9.12□□□□□ -0.95
VPS53-212ENST00000572259 SNIP1Q8TAD8 396 aaKnown RBP9.12□□□□□ -0.95
VPS53-212ENST00000572259 CDCA7Q9BWT1 371 aaPredicted RBP9.12□□□□□ -0.95
VPS53-212ENST00000572259 PKD2L1Q9P0L9 805 aa9.12□□□□□ -0.95
VPS53-212ENST00000572259 WDR7Q9Y4E6 1490 aa9.11□□□□□ -0.95
VPS53-212ENST00000572259 MYCP01106 439 aaPredicted RBP9.11□□□□□ -0.95
VPS53-212ENST00000572259 CSB-PGBD3P0DP91 1061 aa9.11□□□□□ -0.95
VPS53-212ENST00000572259 RASA1P20936 1047 aa9.11□□□□□ -0.95
VPS53-212ENST00000572259 SRPK2P78362 688 aaKnown RBP9.11□□□□□ -0.95
VPS53-212ENST00000572259 CCDC116Q8IYX3 515 aa9.11□□□□□ -0.95
VPS53-212ENST00000572259 CYP4X1Q8N118 509 aa9.11□□□□□ -0.95
VPS53-212ENST00000572259 GLI2P10070 1586 aa9.11□□□□□ -0.95
VPS53-212ENST00000572259 ATP10BO94823 1461 aa9.1□□□□□ -0.95
VPS53-212ENST00000572259 ATP1A2P50993 1020 aa9.1□□□□□ -0.95
VPS53-212ENST00000572259 PDE4CQ08493 712 aa9.1□□□□□ -0.95
VPS53-212ENST00000572259 TNFRSF10AO00220 468 aa9.09□□□□□ -0.95
VPS53-212ENST00000572259 ATG7O95352 703 aa9.09□□□□□ -0.95
VPS53-212ENST00000572259 EPRSP07814 1512 aaKnown RBP9.09□□□□□ -0.95
VPS53-212ENST00000572259 GDF9O60383 454 aa9.08□□□□□ -0.96
VPS53-212ENST00000572259 RETREG2Q8NC44 543 aa9.08□□□□□ -0.96
VPS53-212ENST00000572259 TMPRSS4Q9NRS4 437 aa9.08□□□□□ -0.96
VPS53-212ENST00000572259 DNAAF2Q9NVR5 837 aaKnown RBP9.08□□□□□ -0.96
VPS53-212ENST00000572259 PGPEP1Q9NXJ5 209 aa9.08□□□□□ -0.96
VPS53-212ENST00000572259 RBM19Q9Y4C8 960 aaKnown RBP9.08□□□□□ -0.96
VPS53-212ENST00000572259 TEX14Q8IWB6 1497 aa9.08□□□□□ -0.96
VPS53-212ENST00000572259 ARHGAP35Q9NRY4 1499 aa9.08□□□□□ -0.96
VPS53-212ENST00000572259 FAM196BA6NMK8 535 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 E9PSI1 815 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 GTF2IP78347 998 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 PSME1Q06323 249 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 NNTQ13423 1086 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 PPP1R26Q5T8A7 1209 aaPredicted RBP9.07□□□□□ -0.96
VPS53-212ENST00000572259 CC2D2BQ6DHV5 1058 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 OGFOD1Q8N543 542 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 CYLDQ9NQC7 956 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 EMILIN1Q9Y6C2 1016 aa9.07□□□□□ -0.96
VPS53-212ENST00000572259 CLIP1P30622 1438 aa9.06□□□□□ -0.96
VPS53-212ENST00000572259 CD109Q6YHK3 1445 aa9.06□□□□□ -0.96
VPS53-212ENST00000572259 RGS20O76081 388 aa9.06□□□□□ -0.96
VPS53-212ENST00000572259 NR3C2P08235 984 aa9.06□□□□□ -0.96
VPS53-212ENST00000572259 FOXD4L5Q5VV16 416 aaPredicted RBP9.06□□□□□ -0.96
VPS53-212ENST00000572259 FOXD4L4Q8WXT5 416 aaPredicted RBP9.06□□□□□ -0.96
VPS53-212ENST00000572259 NOVA2Q9UNW9 492 aaKnown RBP9.06□□□□□ -0.96
VPS53-212ENST00000572259 NUP153P49790 1475 aaKnown RBP9.06□□□□□ -0.96
VPS53-212ENST00000572259 CFAP43Q8NDM7 1665 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L15C9J2P7 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L10C9JJH3 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L13C9JLJ4 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L12C9JPN9 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L11C9JVI0 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L21D6R901 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L18D6R9N7 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L22D6RA61 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L17D6RBQ6 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L19D6RCP7 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L20D6RJB6 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 ERVK-9P63128 1117 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 USP17L24Q0WX57 530 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 CRTC2Q53ET0 693 aaPredicted RBP9.05□□□□□ -0.96
VPS53-212ENST00000572259 LARGE2Q8N3Y3 721 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 ZNF594Q96JF6 807 aaPredicted RBP9.05□□□□□ -0.96
VPS53-212ENST00000572259 GZF1Q9H116 711 aaPredicted RBP9.05□□□□□ -0.96
VPS53-212ENST00000572259 HECW1Q76N89 1606 aa9.05□□□□□ -0.96
VPS53-212ENST00000572259 J3QL48 77 aa9.04□□□□□ -0.96
VPS53-212ENST00000572259 SCTRP47872 440 aa9.04□□□□□ -0.96
VPS53-212ENST00000572259 CLDN10P78369 228 aa9.04□□□□□ -0.96
VPS53-212ENST00000572259 PTK7Q13308 1070 aa9.04□□□□□ -0.96
VPS53-212ENST00000572259 ELOAQ14241 798 aaKnown RBP9.04□□□□□ -0.96
VPS53-212ENST00000572259 ZNF784Q8NCA9 323 aaPredicted RBP9.04□□□□□ -0.96
VPS53-212ENST00000572259 FAM200AQ8TCP9 573 aa9.04□□□□□ -0.96
VPS53-212ENST00000572259 MAP3K4Q9Y6R4 1608 aa9.04□□□□□ -0.96
VPS53-212ENST00000572259 KDM6BO15054 1643 aa9.03□□□□□ -0.96
VPS53-212ENST00000572259 PRR20EP86478 221 aa9.03□□□□□ -0.96
VPS53-212ENST00000572259 PRR20CP86479 221 aa9.03□□□□□ -0.96
VPS53-212ENST00000572259 PRR20DP86480 221 aa9.03□□□□□ -0.96
VPS53-212ENST00000572259 PRR20BP86481 221 aa9.03□□□□□ -0.96
VPS53-212ENST00000572259 PRR20AP86496 221 aa9.03□□□□□ -0.96
VPS53-212ENST00000572259 TOR4AQ9NXH8 423 aa9.03□□□□□ -0.96
VPS53-212ENST00000572259 PHLDB1Q86UU1 1377 aa9.02□□□□□ -0.97
VPS53-212ENST00000572259 MAGI3Q5TCQ9 1506 aa9.02□□□□□ -0.97
VPS53-212ENST00000572259 CCDC102BQ68D86 513 aa9.02□□□□□ -0.97
VPS53-212ENST00000572259 ANKMY2Q8IV38 441 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms