RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 RAPGEF4Q8WZA2 1011 aa16.81■□□□□ 0.28
VPS9D1-207ENST00000568691 PKD1L3Q7Z443 1732 aa16.81■□□□□ 0.28
VPS9D1-207ENST00000568691 RTL1A6NKG5 1358 aa16.8■□□□□ 0.28
VPS9D1-207ENST00000568691 PLEKHG2Q9H7P9 1386 aa16.8■□□□□ 0.28
VPS9D1-207ENST00000568691 TATP17735 454 aaPredicted RBP16.8■□□□□ 0.28
VPS9D1-207ENST00000568691 C16orf71Q8IYS4 520 aaPredicted RBP16.8■□□□□ 0.28
VPS9D1-207ENST00000568691 DCAF5Q96JK2 942 aa16.79■□□□□ 0.28
VPS9D1-207ENST00000568691 ASAP1Q9ULH1 1129 aa16.79■□□□□ 0.28
VPS9D1-207ENST00000568691 NKX1-1Q15270 411 aaPredicted RBP16.78■□□□□ 0.28
VPS9D1-207ENST00000568691 COG3Q96JB2 828 aa16.78■□□□□ 0.28
VPS9D1-207ENST00000568691 SLC4A9Q96Q91 983 aa16.78■□□□□ 0.28
VPS9D1-207ENST00000568691 TERF2IPQ9NYB0 399 aa16.78■□□□□ 0.28
VPS9D1-207ENST00000568691 HMGB2P26583 209 aaKnown RBP16.77■□□□□ 0.28
VPS9D1-207ENST00000568691 HSP90AB2PQ58FF8 381 aa16.77■□□□□ 0.28
VPS9D1-207ENST00000568691 SMC1BQ8NDV3 1235 aa16.77■□□□□ 0.28
VPS9D1-207ENST00000568691 RNF181Q9P0P0 153 aa16.77■□□□□ 0.28
VPS9D1-207ENST00000568691 C4AP0C0L4 1744 aa16.76■□□□□ 0.27
VPS9D1-207ENST00000568691 KDM2BQ8NHM5 1336 aa16.76■□□□□ 0.27
VPS9D1-207ENST00000568691 ARFGEF1Q9Y6D6 1849 aa16.76■□□□□ 0.27
VPS9D1-207ENST00000568691 GYS1P13807 737 aa16.76■□□□□ 0.27
VPS9D1-207ENST00000568691 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
VPS9D1-207ENST00000568691 TIMELESSQ9UNS1 1208 aa16.76■□□□□ 0.27
VPS9D1-207ENST00000568691 KDRP35968 1356 aa16.76■□□□□ 0.27
VPS9D1-207ENST00000568691 TMF1P82094 1093 aa16.75■□□□□ 0.27
VPS9D1-207ENST00000568691 TNRC6CQ9HCJ0 1690 aaKnown RBP16.75■□□□□ 0.27
VPS9D1-207ENST00000568691 NCAPD2Q15021 1401 aa16.74■□□□□ 0.27
VPS9D1-207ENST00000568691 ATP6V1AP38606 617 aa16.74■□□□□ 0.27
VPS9D1-207ENST00000568691 NLGN1Q8N2Q7 840 aa16.74■□□□□ 0.27
VPS9D1-207ENST00000568691 ARHGEF1Q92888 912 aaKnown RBP16.74■□□□□ 0.27
VPS9D1-207ENST00000568691 ATG3Q9NT62 314 aa16.74■□□□□ 0.27
VPS9D1-207ENST00000568691 INSRP06213 1382 aa16.74■□□□□ 0.27
VPS9D1-207ENST00000568691 KDM6AO15550 1401 aaPredicted RBP16.72■□□□□ 0.27
VPS9D1-207ENST00000568691 SBF1O95248 1867 aa16.72■□□□□ 0.27
VPS9D1-207ENST00000568691 PUS7Q96PZ0 661 aaKnown RBP16.72■□□□□ 0.27
VPS9D1-207ENST00000568691 CCDC87Q9NVE4 849 aa16.72■□□□□ 0.27
VPS9D1-207ENST00000568691 POTECB2RU33 542 aa16.71■□□□□ 0.27
VPS9D1-207ENST00000568691 FYB1O15117 783 aa16.71■□□□□ 0.27
VPS9D1-207ENST00000568691 CHRNA5P30532 468 aa16.71■□□□□ 0.27
VPS9D1-207ENST00000568691 TRAPPC3LQ5T215 181 aa16.71■□□□□ 0.27
VPS9D1-207ENST00000568691 PIM2Q9P1W9 311 aa16.71■□□□□ 0.27
VPS9D1-207ENST00000568691 RASSF7Q02833 373 aa16.7■□□□□ 0.26
VPS9D1-207ENST00000568691 DDR1Q08345 913 aa16.7■□□□□ 0.26
VPS9D1-207ENST00000568691 GGNBP2Q9H3C7 697 aa16.7■□□□□ 0.26
VPS9D1-207ENST00000568691 DALRD3Q5D0E6 543 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-207ENST00000568691 TESK2Q96S53 571 aa16.69■□□□□ 0.26
VPS9D1-207ENST00000568691 RTCBQ9Y3I0 505 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-207ENST00000568691 SMG6Q86US8 1419 aaKnown RBP16.69■□□□□ 0.26
VPS9D1-207ENST00000568691 FOXN1O15353 648 aa16.68■□□□□ 0.26
VPS9D1-207ENST00000568691 TMOD3Q9NYL9 352 aa16.68■□□□□ 0.26
VPS9D1-207ENST00000568691 CARD11Q9BXL7 1154 aa16.67■□□□□ 0.26
VPS9D1-207ENST00000568691 PARP3Q9Y6F1 533 aa16.67■□□□□ 0.26
VPS9D1-207ENST00000568691 FLT4P35916 1363 aa16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 GLTPD2A6NH11 291 aa16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 RPS6KA4O75676 772 aa16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 FKBP8Q14318 412 aa16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 RC3H1Q5TC82 1133 aaKnown RBP16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 SRP68Q9UHB9 627 aaKnown RBP16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 CNTNAP4Q9C0A0 1308 aa16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 MYH14Q7Z406 1995 aaKnown RBP16.66■□□□□ 0.26
VPS9D1-207ENST00000568691 COL5A3P25940 1745 aaPredicted RBP16.65■□□□□ 0.26
VPS9D1-207ENST00000568691 VEGFAP15692 232 aaPredicted RBP16.65■□□□□ 0.26
VPS9D1-207ENST00000568691 PHKG2P15735 406 aa16.65■□□□□ 0.26
VPS9D1-207ENST00000568691 ADRA2BP18089 450 aa16.65■□□□□ 0.26
VPS9D1-207ENST00000568691 MKRN1Q9UHC7 482 aaKnown RBP16.64■□□□□ 0.25
VPS9D1-207ENST00000568691 EMILIN1Q9Y6C2 1016 aa16.64■□□□□ 0.25
VPS9D1-207ENST00000568691 TONSLQ96HA7 1378 aa16.64■□□□□ 0.25
VPS9D1-207ENST00000568691 ZNF831Q5JPB2 1677 aa16.63■□□□□ 0.25
VPS9D1-207ENST00000568691 ZC3H4Q9UPT8 1303 aaKnown RBP16.63■□□□□ 0.25
VPS9D1-207ENST00000568691 RFC4P35249 363 aa16.62■□□□□ 0.25
VPS9D1-207ENST00000568691 NEUROD1Q13562 356 aa16.62■□□□□ 0.25
VPS9D1-207ENST00000568691 PRDM10Q9NQV6 1147 aa16.62■□□□□ 0.25
VPS9D1-207ENST00000568691 SPG7Q9UQ90 795 aa16.62■□□□□ 0.25
VPS9D1-207ENST00000568691 KIF24Q5T7B8 1368 aa16.62■□□□□ 0.25
VPS9D1-207ENST00000568691 POLRMTO00411 1230 aaKnown RBP16.61■□□□□ 0.25
VPS9D1-207ENST00000568691 POTEIP0CG38 1075 aa16.61■□□□□ 0.25
VPS9D1-207ENST00000568691 POTEJP0CG39 1038 aa16.61■□□□□ 0.25
VPS9D1-207ENST00000568691 FAM161AQ3B820 660 aa16.61■□□□□ 0.25
VPS9D1-207ENST00000568691 EYA1Q99502 592 aa16.61■□□□□ 0.25
VPS9D1-207ENST00000568691 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS9D1-207ENST00000568691 ADAMTS7Q9UKP4 1686 aa16.61■□□□□ 0.25
VPS9D1-207ENST00000568691 NFKBIEO00221 500 aa16.6■□□□□ 0.25
VPS9D1-207ENST00000568691 LMNB1P20700 586 aa16.6■□□□□ 0.25
VPS9D1-207ENST00000568691 TM4SF1P30408 202 aa16.6■□□□□ 0.25
VPS9D1-207ENST00000568691 RBM42Q9BTD8 480 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-207ENST00000568691 USP42Q9H9J4 1324 aaKnown RBP16.6■□□□□ 0.25
VPS9D1-207ENST00000568691 IFNL2Q8IZJ0 200 aa16.59■□□□□ 0.25
VPS9D1-207ENST00000568691 CREBZFQ9NS37 354 aa16.59■□□□□ 0.25
VPS9D1-207ENST00000568691 TIAM2Q8IVF5 1701 aa16.57■□□□□ 0.24
VPS9D1-207ENST00000568691 CNTNAP1P78357 1384 aa16.57■□□□□ 0.24
VPS9D1-207ENST00000568691 ST20-MTHFSA0A0A6YYL1 179 aa16.56■□□□□ 0.24
VPS9D1-207ENST00000568691 CRKLP46109 303 aaKnown RBP16.56■□□□□ 0.24
VPS9D1-207ENST00000568691 CARD14Q9BXL6 1004 aa16.55■□□□□ 0.24
VPS9D1-207ENST00000568691 PCDH10Q9P2E7 1040 aa16.55■□□□□ 0.24
VPS9D1-207ENST00000568691 ANKRD26Q9UPS8 1709 aa16.54■□□□□ 0.24
VPS9D1-207ENST00000568691 PASKQ96RG2 1323 aa16.54■□□□□ 0.24
VPS9D1-207ENST00000568691 INTS5Q6P9B9 1019 aaKnown RBP16.54■□□□□ 0.24
VPS9D1-207ENST00000568691 ABHD8Q96I13 439 aa16.54■□□□□ 0.24
VPS9D1-207ENST00000568691 WBP1LQ9NX94 342 aa16.54■□□□□ 0.24
VPS9D1-207ENST00000568691 WASHC2AQ641Q2 1341 aa16.53■□□□□ 0.24
VPS9D1-207ENST00000568691 ERVV-2B6SEH9 535 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms