RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 KDRP35968 1356 aa20.48■□□□□ 0.87
CLN3-236ENST00000568558 ATP6V1AP38606 617 aa20.48■□□□□ 0.87
CLN3-236ENST00000568558 CCER1Q8TC90 406 aaPredicted RBP20.48■□□□□ 0.87
CLN3-236ENST00000568558 VIRMAQ69YN4 1812 aaKnown RBP20.48■□□□□ 0.87
CLN3-236ENST00000568558 KIF13BQ9NQT8 1826 aa20.47■□□□□ 0.87
CLN3-236ENST00000568558 SCN11AQ9UI33 1791 aa20.46■□□□□ 0.87
CLN3-236ENST00000568558 KDM6AO15550 1401 aaPredicted RBP20.46■□□□□ 0.87
CLN3-236ENST00000568558 ERVV-2B6SEH9 535 aa20.46■□□□□ 0.87
CLN3-236ENST00000568558 GNPATO15228 680 aa20.46■□□□□ 0.87
CLN3-236ENST00000568558 C4AP0C0L4 1744 aa20.45■□□□□ 0.86
CLN3-236ENST00000568558 MYH14Q7Z406 1995 aaKnown RBP20.45■□□□□ 0.86
CLN3-236ENST00000568558 HSP90AB1P08238 724 aaKnown RBP20.45■□□□□ 0.86
CLN3-236ENST00000568558 PLEKHO1Q53GL0 409 aaPredicted RBP20.45■□□□□ 0.86
CLN3-236ENST00000568558 MORC1Q86VD1 984 aa20.45■□□□□ 0.86
CLN3-236ENST00000568558 DCAF5Q96JK2 942 aa20.45■□□□□ 0.86
CLN3-236ENST00000568558 C1QTNF8P60827 252 aa20.44■□□□□ 0.86
CLN3-236ENST00000568558 KIAA1551Q9HCM1 1747 aa20.44■□□□□ 0.86
CLN3-236ENST00000568558 AMOTQ4VCS5 1084 aa20.43■□□□□ 0.86
CLN3-236ENST00000568558 ZNF530Q6P9A1 599 aaPredicted RBP20.43■□□□□ 0.86
CLN3-236ENST00000568558 CICQ96RK0 1608 aaPredicted RBP20.42■□□□□ 0.86
CLN3-236ENST00000568558 AEBP1Q8IUX7 1158 aa20.42■□□□□ 0.86
CLN3-236ENST00000568558 SLC4A9Q96Q91 983 aa20.42■□□□□ 0.86
CLN3-236ENST00000568558 TJP1Q07157 1748 aa20.41■□□□□ 0.86
CLN3-236ENST00000568558 KNSTRNQ9Y448 316 aa20.41■□□□□ 0.86
CLN3-236ENST00000568558 N4BP2Q86UW6 1770 aaPredicted RBP20.41■□□□□ 0.86
CLN3-236ENST00000568558 GIGYF1O75420 1035 aaPredicted RBP20.4■□□□□ 0.86
CLN3-236ENST00000568558 RBM42Q9BTD8 480 aaKnown RBP20.4■□□□□ 0.86
CLN3-236ENST00000568558 CNTNAP4Q9C0A0 1308 aa20.38■□□□□ 0.85
CLN3-236ENST00000568558 CABP4P57796 275 aa20.38■□□□□ 0.85
CLN3-236ENST00000568558 AMER1Q5JTC6 1135 aaPredicted RBP20.38■□□□□ 0.85
CLN3-236ENST00000568558 C1orf141Q5JVX7 400 aa20.38■□□□□ 0.85
CLN3-236ENST00000568558 RC3H1Q5TC82 1133 aaKnown RBP20.38■□□□□ 0.85
CLN3-236ENST00000568558 SULT6B1Q6IMI4 303 aa20.38■□□□□ 0.85
CLN3-236ENST00000568558 RTCBQ9Y3I0 505 aaKnown RBP20.38■□□□□ 0.85
CLN3-236ENST00000568558 ATP10DQ9P241 1426 aa20.37■□□□□ 0.85
CLN3-236ENST00000568558 BRCA1P38398 1863 aaKnown RBP20.37■□□□□ 0.85
CLN3-236ENST00000568558 SENP3-EIF4A1A0A087X0R7 540 aa20.37■□□□□ 0.85
CLN3-236ENST00000568558 IL13P35225 146 aa20.37■□□□□ 0.85
CLN3-236ENST00000568558 MTHFSP49914 203 aa20.37■□□□□ 0.85
CLN3-236ENST00000568558 TRAPPC3LQ5T215 181 aa20.37■□□□□ 0.85
CLN3-236ENST00000568558 KIF7Q2M1P5 1343 aa20.36■□□□□ 0.85
CLN3-236ENST00000568558 MMP10P09238 476 aa20.36■□□□□ 0.85
CLN3-236ENST00000568558 ADCY9O60503 1353 aa20.35■□□□□ 0.85
CLN3-236ENST00000568558 ADRA2BP18089 450 aa20.35■□□□□ 0.85
CLN3-236ENST00000568558 WWC3Q9ULE0 1092 aa20.35■□□□□ 0.85
CLN3-236ENST00000568558 RPS6KA4O75676 772 aa20.34■□□□□ 0.85
CLN3-236ENST00000568558 ARHGEF1Q92888 912 aaKnown RBP20.34■□□□□ 0.85
CLN3-236ENST00000568558 PXDNLA1KZ92 1463 aa20.34■□□□□ 0.85
CLN3-236ENST00000568558 ADAMTS7Q9UKP4 1686 aa20.33■□□□□ 0.85
CLN3-236ENST00000568558 NLGN1Q8N2Q7 840 aa20.33■□□□□ 0.85
CLN3-236ENST00000568558 NFATC2IPQ8NCF5 419 aa20.33■□□□□ 0.85
CLN3-236ENST00000568558 C10orf71Q711Q0 1435 aa20.33■□□□□ 0.84
CLN3-236ENST00000568558 PTCD1O75127 700 aaKnown RBP20.32■□□□□ 0.84
CLN3-236ENST00000568558 MRC1P22897 1456 aa20.31■□□□□ 0.84
CLN3-236ENST00000568558 GYS1P13807 737 aa20.31■□□□□ 0.84
CLN3-236ENST00000568558 ARFGEF1Q9Y6D6 1849 aa20.3■□□□□ 0.84
CLN3-236ENST00000568558 RFC4P35249 363 aa20.3■□□□□ 0.84
CLN3-236ENST00000568558 AKAP4Q5JQC9 854 aa20.3■□□□□ 0.84
CLN3-236ENST00000568558 PER1O15534 1290 aaPredicted RBP20.29■□□□□ 0.84
CLN3-236ENST00000568558 UBR2Q8IWV8 1755 aa20.29■□□□□ 0.84
CLN3-236ENST00000568558 CRKLP46109 303 aaKnown RBP20.28■□□□□ 0.84
CLN3-236ENST00000568558 TGFB2P61812 414 aa20.28■□□□□ 0.84
CLN3-236ENST00000568558 GPBP1L1Q9HC44 474 aaPredicted RBP20.27■□□□□ 0.84
CLN3-236ENST00000568558 CCDC87Q9NVE4 849 aa20.27■□□□□ 0.84
CLN3-236ENST00000568558 HMOX1P09601 288 aa20.26■□□□□ 0.83
CLN3-236ENST00000568558 SLC52A2Q9HAB3 445 aa20.26■□□□□ 0.83
CLN3-236ENST00000568558 PARP3Q9Y6F1 533 aa20.26■□□□□ 0.83
CLN3-236ENST00000568558 LGR6Q9HBX8 967 aa20.25■□□□□ 0.83
CLN3-236ENST00000568558 KCPQ6ZWJ8 1503 aa20.25■□□□□ 0.83
CLN3-236ENST00000568558 USP42Q9H9J4 1324 aaKnown RBP20.25■□□□□ 0.83
CLN3-236ENST00000568558 COL3A1P02461 1466 aaPredicted RBP20.24■□□□□ 0.83
CLN3-236ENST00000568558 A0A0G2JLW4 131 aa20.24■□□□□ 0.83
CLN3-236ENST00000568558 CC2D1BQ5T0F9 858 aaKnown RBP20.24■□□□□ 0.83
CLN3-236ENST00000568558 ZNF526Q8TF50 670 aaPredicted RBP20.24■□□□□ 0.83
CLN3-236ENST00000568558 SRP68Q9UHB9 627 aaKnown RBP20.24■□□□□ 0.83
CLN3-236ENST00000568558 AFDNP55196 1824 aaKnown RBP20.24■□□□□ 0.83
CLN3-236ENST00000568558 SIPA1L3O60292 1781 aaPredicted RBP20.23■□□□□ 0.83
CLN3-236ENST00000568558 RNMTO43148 476 aaKnown RBP20.23■□□□□ 0.83
CLN3-236ENST00000568558 DIAPH1O60610 1272 aaKnown RBP20.23■□□□□ 0.83
CLN3-236ENST00000568558 INTS5Q6P9B9 1019 aaKnown RBP20.23■□□□□ 0.83
CLN3-236ENST00000568558 BCS1LQ9Y276 419 aa20.23■□□□□ 0.83
CLN3-236ENST00000568558 DPEP1P16444 411 aa20.22■□□□□ 0.83
CLN3-236ENST00000568558 FKBP8Q14318 412 aa20.22■□□□□ 0.83
CLN3-236ENST00000568558 MTHFSDQ2M296 383 aaKnown RBP20.22■□□□□ 0.83
CLN3-236ENST00000568558 DNAJC10Q8IXB1 793 aa20.22■□□□□ 0.83
CLN3-236ENST00000568558 NPC1L1Q9UHC9 1359 aa20.21■□□□□ 0.83
CLN3-236ENST00000568558 NRXN2Q9P2S2 1712 aa20.2■□□□□ 0.82
CLN3-236ENST00000568558 DDR1Q08345 913 aa20.2■□□□□ 0.82
CLN3-236ENST00000568558 SLC39A6Q13433 755 aa20.2■□□□□ 0.82
CLN3-236ENST00000568558 SOS1Q07889 1333 aaPredicted RBP20.19■□□□□ 0.82
CLN3-236ENST00000568558 DLEC1Q9Y238 1755 aa20.18■□□□□ 0.82
CLN3-236ENST00000568558 CEP350Q5VT06 3117 aa20.18■□□□□ 0.82
CLN3-236ENST00000568558 FCHSD2O94868 740 aa20.18■□□□□ 0.82
CLN3-236ENST00000568558 CYP19A1P11511 503 aaPredicted RBP20.18■□□□□ 0.82
CLN3-236ENST00000568558 KCNA3P22001 575 aa20.18■□□□□ 0.82
CLN3-236ENST00000568558 SBF1O95248 1867 aa20.18■□□□□ 0.82
CLN3-236ENST00000568558 TM4SF1P30408 202 aa20.16■□□□□ 0.82
CLN3-236ENST00000568558 ARHGAP27Q6ZUM4 889 aa20.16■□□□□ 0.82
CLN3-236ENST00000568558 COL15A1P39059 1388 aa20.16■□□□□ 0.82
CLN3-236ENST00000568558 POLRMTO00411 1230 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms