RNA–Protein interactions for RNA: ENST00000567737.1

SMG1-213, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, human

TSL 3

Gene SMG1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG1-213	ENST00000567737	ROCK2	O75116	1388 aa	Known RBP	19.64	■□□□□ 0.73
SMG1-213	ENST00000567737	N4BP2	Q86UW6	1770 aa	Predicted RBP	19.64	■□□□□ 0.73
SMG1-213	ENST00000567737	KIF13B	Q9NQT8	1826 aa		19.63	■□□□□ 0.73
SMG1-213	ENST00000567737	KIAA1551	Q9HCM1	1747 aa		19.63	■□□□□ 0.73
SMG1-213	ENST00000567737	GNPAT	O15228	680 aa		19.63	■□□□□ 0.73
SMG1-213	ENST00000567737	NBPF6	Q5VWK0	638 aa		19.63	■□□□□ 0.73
SMG1-213	ENST00000567737	NBPF4	Q96M43	638 aa		19.63	■□□□□ 0.73
SMG1-213	ENST00000567737	RGPD2	P0DJD1	1756 aa		19.62	■□□□□ 0.73
SMG1-213	ENST00000567737	DPEP1	P16444	411 aa		19.62	■□□□□ 0.73
SMG1-213	ENST00000567737	USHBP1	Q8N6Y0	703 aa		19.62	■□□□□ 0.73
SMG1-213	ENST00000567737	LINC00116	Q8NCU8	138 aa		19.62	■□□□□ 0.73
SMG1-213	ENST00000567737	SLC12A5	Q9H2X9	1139 aa		19.62	■□□□□ 0.73
SMG1-213	ENST00000567737	COG3	Q96JB2	828 aa		19.61	■□□□□ 0.73
SMG1-213	ENST00000567737	CCDC87	Q9NVE4	849 aa		19.61	■□□□□ 0.73
SMG1-213	ENST00000567737	RNF181	Q9P0P0	153 aa		19.61	■□□□□ 0.73
SMG1-213	ENST00000567737	LOC102724428	A0A0B4J2F2	783 aa		19.6	■□□□□ 0.73
SMG1-213	ENST00000567737	SIK1	P57059	783 aa		19.6	■□□□□ 0.73
SMG1-213	ENST00000567737	SMG6	Q86US8	1419 aa	Known RBP	19.59	■□□□□ 0.73
SMG1-213	ENST00000567737		A0A1W2PP64	1363 aa		19.59	■□□□□ 0.73
SMG1-213	ENST00000567737	TNRC6C	Q9HCJ0	1690 aa	Known RBP	19.59	■□□□□ 0.73
SMG1-213	ENST00000567737	NLGN1	Q8N2Q7	840 aa		19.59	■□□□□ 0.73
SMG1-213	ENST00000567737	PKD1L3	Q7Z443	1732 aa		19.59	■□□□□ 0.73
SMG1-213	ENST00000567737	RTL1	A6NKG5	1358 aa		19.58	■□□□□ 0.73
SMG1-213	ENST00000567737	PIGB	Q92521	554 aa		19.58	■□□□□ 0.72
SMG1-213	ENST00000567737	TMF1	P82094	1093 aa		19.57	■□□□□ 0.72
SMG1-213	ENST00000567737	CYP27B1	O15528	508 aa		19.56	■□□□□ 0.72
SMG1-213	ENST00000567737	FBLN1	P23142	703 aa		19.56	■□□□□ 0.72
SMG1-213	ENST00000567737	CACNB1	Q02641	598 aa	Predicted RBP	19.56	■□□□□ 0.72
SMG1-213	ENST00000567737	L3MBTL2	Q969R5	705 aa		19.56	■□□□□ 0.72
SMG1-213	ENST00000567737	PIM2	Q9P1W9	311 aa		19.56	■□□□□ 0.72
SMG1-213	ENST00000567737	ATP6V1A	P38606	617 aa		19.55	■□□□□ 0.72
SMG1-213	ENST00000567737	ITPK1	Q13572	414 aa		19.54	■□□□□ 0.72
SMG1-213	ENST00000567737	TRAPPC3L	Q5T215	181 aa		19.54	■□□□□ 0.72
SMG1-213	ENST00000567737	DCAF5	Q96JK2	942 aa		19.54	■□□□□ 0.72
SMG1-213	ENST00000567737	PCDH10	Q9P2E7	1040 aa		19.54	■□□□□ 0.72
SMG1-213	ENST00000567737	RTCB	Q9Y3I0	505 aa	Known RBP	19.54	■□□□□ 0.72
SMG1-213	ENST00000567737	PARP3	Q9Y6F1	533 aa		19.54	■□□□□ 0.72
SMG1-213	ENST00000567737	ITGB4	P16144	1822 aa		19.53	■□□□□ 0.72
SMG1-213	ENST00000567737	KCNA3	P22001	575 aa		19.53	■□□□□ 0.72
SMG1-213	ENST00000567737	DALRD3	Q5D0E6	543 aa	Known RBP	19.53	■□□□□ 0.72
SMG1-213	ENST00000567737	BRCA1	P38398	1863 aa	Known RBP	19.53	■□□□□ 0.72
SMG1-213	ENST00000567737	ARFGEF1	Q9Y6D6	1849 aa		19.53	■□□□□ 0.72
SMG1-213	ENST00000567737	RRS1	Q15050	365 aa	Known RBP	19.52	■□□□□ 0.72
SMG1-213	ENST00000567737	MAP2	P11137	1827 aa	Known RBP	19.52	■□□□□ 0.72
SMG1-213	ENST00000567737	C4A	P0C0L4	1744 aa		19.51	■□□□□ 0.71
SMG1-213	ENST00000567737	TMOD3	Q9NYL9	352 aa		19.51	■□□□□ 0.71
SMG1-213	ENST00000567737	VEGFA	P15692	232 aa	Predicted RBP	19.5	■□□□□ 0.71
SMG1-213	ENST00000567737	ZC3H4	Q9UPT8	1303 aa	Known RBP	19.5	■□□□□ 0.71
SMG1-213	ENST00000567737	ASAP1	Q9ULH1	1129 aa		19.49	■□□□□ 0.71
SMG1-213	ENST00000567737	GYS1	P13807	737 aa		19.48	■□□□□ 0.71
SMG1-213	ENST00000567737	RFC4	P35249	363 aa		19.48	■□□□□ 0.71
SMG1-213	ENST00000567737	NKX1-1	Q15270	411 aa	Predicted RBP	19.48	■□□□□ 0.71
SMG1-213	ENST00000567737	ARHGEF1	Q92888	912 aa	Known RBP	19.47	■□□□□ 0.71
SMG1-213	ENST00000567737	PRDM10	Q9NQV6	1147 aa		19.47	■□□□□ 0.71
SMG1-213	ENST00000567737	GLTPD2	A6NH11	291 aa		19.46	■□□□□ 0.71
SMG1-213	ENST00000567737	PUS7	Q96PZ0	661 aa	Known RBP	19.46	■□□□□ 0.71
SMG1-213	ENST00000567737	SPG7	Q9UQ90	795 aa		19.46	■□□□□ 0.71
SMG1-213	ENST00000567737	INSR	P06213	1382 aa		19.45	■□□□□ 0.7
SMG1-213	ENST00000567737	FOXN1	O15353	648 aa		19.45	■□□□□ 0.7
SMG1-213	ENST00000567737	HSP90AB2P	Q58FF8	381 aa		19.45	■□□□□ 0.7
SMG1-213	ENST00000567737	FAM161A	Q3B820	660 aa		19.44	■□□□□ 0.7
SMG1-213	ENST00000567737	MKRN1	Q9UHC7	482 aa	Known RBP	19.44	■□□□□ 0.7
SMG1-213	ENST00000567737	RASSF7	Q02833	373 aa		19.43	■□□□□ 0.7
SMG1-213	ENST00000567737	CREBZF	Q9NS37	354 aa		19.43	■□□□□ 0.7
SMG1-213	ENST00000567737	ATG3	Q9NT62	314 aa		19.43	■□□□□ 0.7
SMG1-213	ENST00000567737	SBF1	O95248	1867 aa		19.42	■□□□□ 0.7
SMG1-213	ENST00000567737	LMNB1	P20700	586 aa		19.42	■□□□□ 0.7
SMG1-213	ENST00000567737	CHRNA5	P30532	468 aa		19.42	■□□□□ 0.7
SMG1-213	ENST00000567737	RC3H1	Q5TC82	1133 aa	Known RBP	19.42	■□□□□ 0.7
SMG1-213	ENST00000567737	CARD11	Q9BXL7	1154 aa		19.42	■□□□□ 0.7
SMG1-213	ENST00000567737	FLT4	P35916	1363 aa		19.42	■□□□□ 0.7
SMG1-213	ENST00000567737	RPS6KA4	O75676	772 aa		19.41	■□□□□ 0.7
SMG1-213	ENST00000567737	AIDA	Q96BJ3	306 aa		19.41	■□□□□ 0.7
SMG1-213	ENST00000567737	CTCF	P49711	727 aa	Predicted RBP	19.4	■□□□□ 0.7
SMG1-213	ENST00000567737	CNTNAP4	Q9C0A0	1308 aa		19.4	■□□□□ 0.7
SMG1-213	ENST00000567737	KDR	P35968	1356 aa		19.4	■□□□□ 0.7
SMG1-213	ENST00000567737	KDM6A	O15550	1401 aa	Predicted RBP	19.4	■□□□□ 0.7
SMG1-213	ENST00000567737	RBM42	Q9BTD8	480 aa	Known RBP	19.39	■□□□□ 0.69
SMG1-213	ENST00000567737	GGNBP2	Q9H3C7	697 aa		19.39	■□□□□ 0.69
SMG1-213	ENST00000567737	KIF24	Q5T7B8	1368 aa		19.38	■□□□□ 0.69
SMG1-213	ENST00000567737	IFNL2	Q8IZJ0	200 aa		19.37	■□□□□ 0.69
SMG1-213	ENST00000567737	FYB1	O15117	783 aa		19.36	■□□□□ 0.69
SMG1-213	ENST00000567737	DDR1	Q08345	913 aa		19.36	■□□□□ 0.69
SMG1-213	ENST00000567737	DPY19L2	Q6NUT2	758 aa		19.36	■□□□□ 0.69
SMG1-213	ENST00000567737	SLC4A9	Q96Q91	983 aa		19.36	■□□□□ 0.69
SMG1-213	ENST00000567737	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	19.36	■□□□□ 0.69
SMG1-213	ENST00000567737	CNTNAP1	P78357	1384 aa		19.35	■□□□□ 0.69
SMG1-213	ENST00000567737	PHKG2	P15735	406 aa		19.35	■□□□□ 0.69
SMG1-213	ENST00000567737	FKBP8	Q14318	412 aa		19.35	■□□□□ 0.69
SMG1-213	ENST00000567737	POTEC	B2RU33	542 aa		19.34	■□□□□ 0.69
SMG1-213	ENST00000567737	POLA2	Q14181	598 aa		19.34	■□□□□ 0.69
SMG1-213	ENST00000567737	CHADL	Q6NUI6	762 aa		19.34	■□□□□ 0.69
SMG1-213	ENST00000567737	ABHD8	Q96I13	439 aa		19.34	■□□□□ 0.69
SMG1-213	ENST00000567737	SIN3A	Q96ST3	1273 aa		19.34	■□□□□ 0.69
SMG1-213	ENST00000567737	ZNF831	Q5JPB2	1677 aa		19.33	■□□□□ 0.69
SMG1-213	ENST00000567737	USP42	Q9H9J4	1324 aa	Known RBP	19.33	■□□□□ 0.69
SMG1-213	ENST00000567737	NEUROD1	Q13562	356 aa		19.33	■□□□□ 0.68
SMG1-213	ENST00000567737	SRP68	Q9UHB9	627 aa	Known RBP	19.33	■□□□□ 0.68
SMG1-213	ENST00000567737	NCAPD2	Q15021	1401 aa		19.33	■□□□□ 0.68
SMG1-213	ENST00000567737	COL5A3	P25940	1745 aa	Predicted RBP	19.32	■□□□□ 0.68

Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms