RNA–Protein interactions for RNA: ENST00000565662.5

USB1-211, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 719 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-211ENST00000565662 AEBP1Q8IUX7 1158 aa22.5■■□□□ 1.19
USB1-211ENST00000565662 NUDCQ9Y266 331 aa22.5■■□□□ 1.19
USB1-211ENST00000565662 MRC1P22897 1456 aa22.48■■□□□ 1.19
USB1-211ENST00000565662 ATP6V1AP38606 617 aa22.47■■□□□ 1.19
USB1-211ENST00000565662 MSH5O43196 834 aa22.46■■□□□ 1.19
USB1-211ENST00000565662 KCNQ4P56696 695 aa22.46■■□□□ 1.19
USB1-211ENST00000565662 GAS2L2Q8NHY3 880 aa22.46■■□□□ 1.19
USB1-211ENST00000565662 ATG3Q9NT62 314 aa22.46■■□□□ 1.19
USB1-211ENST00000565662 ASAP1Q9ULH1 1129 aa22.46■■□□□ 1.19
USB1-211ENST00000565662 ADAMTS7Q9UKP4 1686 aa22.46■■□□□ 1.19
USB1-211ENST00000565662 VIRMAQ69YN4 1812 aaKnown RBP22.45■■□□□ 1.19
USB1-211ENST00000565662 COL5A3P25940 1745 aaPredicted RBP22.45■■□□□ 1.18
USB1-211ENST00000565662 ADRA2BP18089 450 aa22.44■■□□□ 1.18
USB1-211ENST00000565662 SYT17Q9BSW7 474 aa22.44■■□□□ 1.18
USB1-211ENST00000565662 FHDC1Q9C0D6 1143 aaPredicted RBP22.44■■□□□ 1.18
USB1-211ENST00000565662 HMOX1P09601 288 aa22.43■■□□□ 1.18
USB1-211ENST00000565662 RC3H1Q5TC82 1133 aaKnown RBP22.43■■□□□ 1.18
USB1-211ENST00000565662 COL23A1Q86Y22 540 aaPredicted RBP22.43■■□□□ 1.18
USB1-211ENST00000565662 CNTNAP4Q9C0A0 1308 aa22.42■■□□□ 1.18
USB1-211ENST00000565662 U2SURPO15042 1029 aaKnown RBP22.42■■□□□ 1.18
USB1-211ENST00000565662 SLC52A2Q9HAB3 445 aa22.41■■□□□ 1.18
USB1-211ENST00000565662 RBM42Q9BTD8 480 aaKnown RBP22.4■■□□□ 1.18
USB1-211ENST00000565662 RTCBQ9Y3I0 505 aaKnown RBP22.4■■□□□ 1.18
USB1-211ENST00000565662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.39■■□□□ 1.17
USB1-211ENST00000565662 GNPATO15228 680 aa22.39■■□□□ 1.17
USB1-211ENST00000565662 NFATC2IPQ8NCF5 419 aa22.39■■□□□ 1.17
USB1-211ENST00000565662 LINC00116Q8NCU8 138 aa22.39■■□□□ 1.17
USB1-211ENST00000565662 PPP2R1AP30153 589 aa22.38■■□□□ 1.17
USB1-211ENST00000565662 RNMTO43148 476 aaKnown RBP22.37■■□□□ 1.17
USB1-211ENST00000565662 NEFMP07197 916 aa22.37■■□□□ 1.17
USB1-211ENST00000565662 ITPK1Q13572 414 aa22.36■■□□□ 1.17
USB1-211ENST00000565662 MTHFSDQ2M296 383 aaKnown RBP22.36■■□□□ 1.17
USB1-211ENST00000565662 GNAT3A8MTJ3 354 aa22.35■■□□□ 1.17
USB1-211ENST00000565662 FCHSD2O94868 740 aa22.35■■□□□ 1.17
USB1-211ENST00000565662 CNGB1Q14028 1251 aaPredicted RBP22.35■■□□□ 1.17
USB1-211ENST00000565662 CD2APQ9Y5K6 639 aa22.35■■□□□ 1.17
USB1-211ENST00000565662 PHF14O94880 888 aa22.34■■□□□ 1.17
USB1-211ENST00000565662 TEFQ10587 303 aa22.34■■□□□ 1.17
USB1-211ENST00000565662 TRAPPC3LQ5T215 181 aa22.34■■□□□ 1.17
USB1-211ENST00000565662 VSIG10Q8N0Z9 540 aa22.34■■□□□ 1.17
USB1-211ENST00000565662 PNNQ9H307 717 aaKnown RBP22.34■■□□□ 1.17
USB1-211ENST00000565662 TJP1Q07157 1748 aa22.34■■□□□ 1.17
USB1-211ENST00000565662 TTC5Q8N0Z6 440 aa22.33■■□□□ 1.17
USB1-211ENST00000565662 UBR2Q8IWV8 1755 aa22.33■■□□□ 1.16
USB1-211ENST00000565662 CHD4Q14839 1912 aa22.32■■□□□ 1.16
USB1-211ENST00000565662 RPS6KA4O75676 772 aa22.32■■□□□ 1.16
USB1-211ENST00000565662 RALBP1Q15311 655 aa22.32■■□□□ 1.16
USB1-211ENST00000565662 NLGN1Q8N2Q7 840 aa22.32■■□□□ 1.16
USB1-211ENST00000565662 PTCD1O75127 700 aaKnown RBP22.31■■□□□ 1.16
USB1-211ENST00000565662 U2AF1L5P0DN76 240 aaPredicted RBP22.31■■□□□ 1.16
USB1-211ENST00000565662 U2AF1Q01081 240 aaKnown RBP eCLIP22.31■■□□□ 1.16
USB1-211ENST00000565662 RSPH6AQ9H0K4 717 aa22.31■■□□□ 1.16
USB1-211ENST00000565662 SIPA1L3O60292 1781 aaPredicted RBP22.3■■□□□ 1.16
USB1-211ENST00000565662 PRKAR2BP31323 418 aa22.3■■□□□ 1.16
USB1-211ENST00000565662 RFC4P35249 363 aa22.3■■□□□ 1.16
USB1-211ENST00000565662 ZEB1P37275 1124 aaPredicted RBP22.3■■□□□ 1.16
USB1-211ENST00000565662 KLHL34Q8N239 644 aa22.3■■□□□ 1.16
USB1-211ENST00000565662 C4AP0C0L4 1744 aa22.29■■□□□ 1.16
USB1-211ENST00000565662 HTATSF1O43719 755 aaKnown RBP22.29■■□□□ 1.16
USB1-211ENST00000565662 YY1P25490 414 aa22.29■■□□□ 1.16
USB1-211ENST00000565662 RTF1Q92541 710 aaKnown RBP22.29■■□□□ 1.16
USB1-211ENST00000565662 TEX13AQ9BXU3 409 aaPredicted RBP22.29■■□□□ 1.16
USB1-211ENST00000565662 CEMIPQ8WUJ3 1361 aa22.28■■□□□ 1.16
USB1-211ENST00000565662 KCPQ6ZWJ8 1503 aa22.28■■□□□ 1.16
USB1-211ENST00000565662 CRKLP46109 303 aaKnown RBP22.28■■□□□ 1.16
USB1-211ENST00000565662 MSL1Q68DK7 614 aa22.28■■□□□ 1.16
USB1-211ENST00000565662 SLC4A9Q96Q91 983 aa22.28■■□□□ 1.16
USB1-211ENST00000565662 LGR6Q9HBX8 967 aa22.28■■□□□ 1.16
USB1-211ENST00000565662 GRIN3BO60391 1043 aa22.27■■□□□ 1.16
USB1-211ENST00000565662 MYH14Q7Z406 1995 aaKnown RBP22.27■■□□□ 1.15
USB1-211ENST00000565662 GPR162Q16538 588 aa22.26■■□□□ 1.15
USB1-211ENST00000565662 STARD3NLO95772 234 aa22.25■■□□□ 1.15
USB1-211ENST00000565662 CCDC87Q9NVE4 849 aa22.25■■□□□ 1.15
USB1-211ENST00000565662 KIF13BQ9NQT8 1826 aa22.23■■□□□ 1.15
USB1-211ENST00000565662 ZNF790Q6PG37 636 aa22.23■■□□□ 1.15
USB1-211ENST00000565662 ARHGEF1Q92888 912 aaKnown RBP22.23■■□□□ 1.15
USB1-211ENST00000565662 AMIGO3Q86WK7 504 aa22.22■■□□□ 1.15
USB1-211ENST00000565662 FMNL2Q96PY5 1086 aa22.21■■□□□ 1.15
USB1-211ENST00000565662 USP42Q9H9J4 1324 aaKnown RBP22.21■■□□□ 1.15
USB1-211ENST00000565662 ZPR1O75312 459 aa22.2■■□□□ 1.14
USB1-211ENST00000565662 MMP10P09238 476 aa22.2■■□□□ 1.14
USB1-211ENST00000565662 IL17REQ8NFR9 667 aa22.2■■□□□ 1.14
USB1-211ENST00000565662 PARP3Q9Y6F1 533 aa22.2■■□□□ 1.14
USB1-211ENST00000565662 MAPK8IP3Q9UPT6 1336 aa22.2■■□□□ 1.14
USB1-211ENST00000565662 HEG1Q9ULI3 1381 aa22.2■■□□□ 1.14
USB1-211ENST00000565662 A0A087WZG4 1122 aa22.19■■□□□ 1.14
USB1-211ENST00000565662 CYP19A1P11511 503 aaPredicted RBP22.19■■□□□ 1.14
USB1-211ENST00000565662 GYS1P13807 737 aa22.19■■□□□ 1.14
USB1-211ENST00000565662 SLC39A6Q13433 755 aa22.19■■□□□ 1.14
USB1-211ENST00000565662 NPM2Q86SE8 214 aaKnown RBP22.19■■□□□ 1.14
USB1-211ENST00000565662 DNAJC10Q8IXB1 793 aa22.19■■□□□ 1.14
USB1-211ENST00000565662 SOS1Q07889 1333 aaPredicted RBP22.19■■□□□ 1.14
USB1-211ENST00000565662 MYBBP1AQ9BQG0 1328 aaKnown RBP22.19■■□□□ 1.14
USB1-211ENST00000565662 COL15A1P39059 1388 aa22.18■■□□□ 1.14
USB1-211ENST00000565662 BTBD11A6QL63 1104 aa22.18■■□□□ 1.14
USB1-211ENST00000565662 TGFB2P61812 414 aa22.18■■□□□ 1.14
USB1-211ENST00000565662 NLGN2Q8NFZ4 835 aa22.18■■□□□ 1.14
USB1-211ENST00000565662 PHACTR3Q96KR7 559 aa22.18■■□□□ 1.14
USB1-211ENST00000565662 C10orf71Q711Q0 1435 aa22.17■■□□□ 1.14
USB1-211ENST00000565662 INTS5Q6P9B9 1019 aaKnown RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms