RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, human

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB40C-209	ENST00000565511	SULT6B1	Q6IMI4	303 aa		32.42	■■■□□ 2.78
RAB40C-209	ENST00000565511	COL5A3	P25940	1745 aa	Predicted RBP	32.41	■■■□□ 2.78
RAB40C-209	ENST00000565511	ZNF831	Q5JPB2	1677 aa		32.4	■■■□□ 2.78
RAB40C-209	ENST00000565511	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	32.4	■■■□□ 2.78
RAB40C-209	ENST00000565511	FLAD1	Q8NFF5	587 aa		32.4	■■■□□ 2.78
RAB40C-209	ENST00000565511	ATP6V1A	P38606	617 aa		32.39	■■■□□ 2.78
RAB40C-209	ENST00000565511	DCAF5	Q96JK2	942 aa		32.39	■■■□□ 2.78
RAB40C-209	ENST00000565511	GOLGB1	Q14789	3259 aa	Known RBP	32.39	■■■□□ 2.78
RAB40C-209	ENST00000565511	SCN11A	Q9UI33	1791 aa		32.38	■■■□□ 2.77
RAB40C-209	ENST00000565511	ERVV-2	B6SEH9	535 aa		32.38	■■■□□ 2.77
RAB40C-209	ENST00000565511	GPR162	Q16538	588 aa		32.37	■■■□□ 2.77
RAB40C-209	ENST00000565511	AMOT	Q4VCS5	1084 aa		32.37	■■■□□ 2.77
RAB40C-209	ENST00000565511	MTHFS	P49914	203 aa		32.36	■■■□□ 2.77
RAB40C-209	ENST00000565511	CC2D1B	Q5T0F9	858 aa	Known RBP	32.36	■■■□□ 2.77
RAB40C-209	ENST00000565511	VIRMA	Q69YN4	1812 aa	Known RBP	32.35	■■■□□ 2.77
RAB40C-209	ENST00000565511	GNPAT	O15228	680 aa		32.35	■■■□□ 2.77
RAB40C-209	ENST00000565511	HSP90AB1	P08238	724 aa	Known RBP	32.35	■■■□□ 2.77
RAB40C-209	ENST00000565511	PELP1	Q8IZL8	1130 aa	Known RBP	32.35	■■■□□ 2.77
RAB40C-209	ENST00000565511	MYH14	Q7Z406	1995 aa	Known RBP	32.34	■■■□□ 2.77
RAB40C-209	ENST00000565511	SSFA2	P28290	1259 aa		32.34	■■■□□ 2.77
RAB40C-209	ENST00000565511	ZNF784	Q8NCA9	323 aa	Predicted RBP	32.34	■■■□□ 2.77
RAB40C-209	ENST00000565511	YBX3	P16989	372 aa	Known RBP eCLIP	32.33	■■■□□ 2.77
RAB40C-209	ENST00000565511	RBM42	Q9BTD8	480 aa	Known RBP	32.32	■■■□□ 2.76
RAB40C-209	ENST00000565511	TJP1	Q07157	1748 aa		32.31	■■■□□ 2.76
RAB40C-209	ENST00000565511	COL3A1	P02461	1466 aa	Predicted RBP	32.31	■■■□□ 2.76
RAB40C-209	ENST00000565511	HMGB2	P26583	209 aa	Known RBP	32.31	■■■□□ 2.76
RAB40C-209	ENST00000565511	CABP4	P57796	275 aa		32.31	■■■□□ 2.76
RAB40C-209	ENST00000565511	HMOX1	P09601	288 aa		32.29	■■■□□ 2.76
RAB40C-209	ENST00000565511	C1orf141	Q5JVX7	400 aa		32.29	■■■□□ 2.76
RAB40C-209	ENST00000565511	C4A	P0C0L4	1744 aa		32.29	■■■□□ 2.76
RAB40C-209	ENST00000565511	CNGB1	Q14028	1251 aa	Predicted RBP	32.28	■■■□□ 2.76
RAB40C-209	ENST00000565511	CIC	Q96RK0	1608 aa	Predicted RBP	32.26	■■■□□ 2.76
RAB40C-209	ENST00000565511	NFATC2IP	Q8NCF5	419 aa		32.26	■■■□□ 2.75
RAB40C-209	ENST00000565511	CD2AP	Q9Y5K6	639 aa		32.25	■■■□□ 2.75
RAB40C-209	ENST00000565511	ADAMTS7	Q9UKP4	1686 aa		32.24	■■■□□ 2.75
RAB40C-209	ENST00000565511	MRC1	P22897	1456 aa		32.24	■■■□□ 2.75
RAB40C-209	ENST00000565511	NPC1L1	Q9UHC9	1359 aa		32.24	■■■□□ 2.75
RAB40C-209	ENST00000565511	PTCD1	O75127	700 aa	Known RBP	32.23	■■■□□ 2.75
RAB40C-209	ENST00000565511	CNTNAP4	Q9C0A0	1308 aa		32.23	■■■□□ 2.75
RAB40C-209	ENST00000565511	LGR6	Q9HBX8	967 aa		32.22	■■■□□ 2.75
RAB40C-209	ENST00000565511	KIAA1551	Q9HCM1	1747 aa		32.22	■■■□□ 2.75
RAB40C-209	ENST00000565511	AKAP4	Q5JQC9	854 aa		32.21	■■■□□ 2.75
RAB40C-209	ENST00000565511	DIAPH1	O60610	1272 aa	Known RBP	32.2	■■■□□ 2.75
RAB40C-209	ENST00000565511	KIF13B	Q9NQT8	1826 aa		32.19	■■■□□ 2.74
RAB40C-209	ENST00000565511	RC3H1	Q5TC82	1133 aa	Known RBP	32.19	■■■□□ 2.74
RAB40C-209	ENST00000565511	RTCB	Q9Y3I0	505 aa	Known RBP	32.19	■■■□□ 2.74
RAB40C-209	ENST00000565511	MTHFSD	Q2M296	383 aa	Known RBP	32.18	■■■□□ 2.74
RAB40C-209	ENST00000565511	ARHGEF1	Q92888	912 aa	Known RBP	32.18	■■■□□ 2.74
RAB40C-209	ENST00000565511	WWC3	Q9ULE0	1092 aa		32.18	■■■□□ 2.74
RAB40C-209	ENST00000565511	MMP10	P09238	476 aa		32.16	■■■□□ 2.74
RAB40C-209	ENST00000565511	TRAPPC3L	Q5T215	181 aa		32.16	■■■□□ 2.74
RAB40C-209	ENST00000565511	KCP	Q6ZWJ8	1503 aa		32.16	■■■□□ 2.74
RAB40C-209	ENST00000565511	RNMT	O43148	476 aa	Known RBP	32.15	■■■□□ 2.74
RAB40C-209	ENST00000565511	RPS6KA4	O75676	772 aa		32.15	■■■□□ 2.74
RAB40C-209	ENST00000565511	SLC52A2	Q9HAB3	445 aa		32.15	■■■□□ 2.74
RAB40C-209	ENST00000565511	CRKL	P46109	303 aa	Known RBP	32.14	■■■□□ 2.74
RAB40C-209	ENST00000565511	N4BP2	Q86UW6	1770 aa	Predicted RBP	32.14	■■■□□ 2.74
RAB40C-209	ENST00000565511	GYS1	P13807	737 aa		32.12	■■■□□ 2.73
RAB40C-209	ENST00000565511	SLC39A6	Q13433	755 aa		32.12	■■■□□ 2.73
RAB40C-209	ENST00000565511	UBR2	Q8IWV8	1755 aa		32.12	■■■□□ 2.73
RAB40C-209	ENST00000565511	GRIN3B	O60391	1043 aa		32.11	■■■□□ 2.73
RAB40C-209	ENST00000565511	ADRA2B	P18089	450 aa		32.11	■■■□□ 2.73
RAB40C-209	ENST00000565511	PXDNL	A1KZ92	1463 aa		32.1	■■■□□ 2.73
RAB40C-209	ENST00000565511	DNAJC10	Q8IXB1	793 aa		32.09	■■■□□ 2.73
RAB40C-209	ENST00000565511	SRP68	Q9UHB9	627 aa	Known RBP	32.09	■■■□□ 2.73
RAB40C-209	ENST00000565511	C10orf71	Q711Q0	1435 aa		32.09	■■■□□ 2.73
RAB40C-209	ENST00000565511	INTS5	Q6P9B9	1019 aa	Known RBP	32.08	■■■□□ 2.73
RAB40C-209	ENST00000565511	SIPA1L3	O60292	1781 aa	Predicted RBP	32.07	■■■□□ 2.72
RAB40C-209	ENST00000565511	U2SURP	O15042	1029 aa	Known RBP	32.07	■■■□□ 2.72
RAB40C-209	ENST00000565511	RFC4	P35249	363 aa		32.06	■■■□□ 2.72
RAB40C-209	ENST00000565511	NLGN1	Q8N2Q7	840 aa		32.05	■■■□□ 2.72
RAB40C-209	ENST00000565511	BRCA1	P38398	1863 aa	Known RBP	32.03	■■■□□ 2.72
RAB40C-209	ENST00000565511	USP42	Q9H9J4	1324 aa	Known RBP	32.02	■■■□□ 2.72
RAB40C-209	ENST00000565511	FKBP8	Q14318	412 aa		32.01	■■■□□ 2.71
RAB40C-209	ENST00000565511	CYP19A1	P11511	503 aa	Predicted RBP	32	■■■□□ 2.71
RAB40C-209	ENST00000565511	ATP10D	Q9P241	1426 aa		32	■■■□□ 2.71
RAB40C-209	ENST00000565511	SOS1	Q07889	1333 aa	Predicted RBP	32	■■■□□ 2.71
RAB40C-209	ENST00000565511	ADCY9	O60503	1353 aa		31.99	■■■□□ 2.71
RAB40C-209	ENST00000565511	DDR1	Q08345	913 aa		31.99	■■■□□ 2.71
RAB40C-209	ENST00000565511	IL17RE	Q8NFR9	667 aa		31.99	■■■□□ 2.71
RAB40C-209	ENST00000565511	CCDC87	Q9NVE4	849 aa		31.99	■■■□□ 2.71
RAB40C-209	ENST00000565511		A0A0G2JLW4	131 aa		31.97	■■■□□ 2.71
RAB40C-209	ENST00000565511	PHACTR3	Q96KR7	559 aa		31.97	■■■□□ 2.71
RAB40C-209	ENST00000565511	PPP2R1A	P30153	589 aa		31.96	■■■□□ 2.71
RAB40C-209	ENST00000565511	RSPH6A	Q9H0K4	717 aa		31.96	■■■□□ 2.71
RAB40C-209	ENST00000565511	ZBTB1	Q9Y2K1	713 aa		31.96	■■■□□ 2.71
RAB40C-209	ENST00000565511	PARP3	Q9Y6F1	533 aa		31.95	■■■□□ 2.71
RAB40C-209	ENST00000565511	PRKAR2B	P31323	418 aa		31.94	■■■□□ 2.7
RAB40C-209	ENST00000565511	DPEP1	P16444	411 aa		31.93	■■■□□ 2.7
RAB40C-209	ENST00000565511	C1QTNF8	P60827	252 aa		31.93	■■■□□ 2.7
RAB40C-209	ENST00000565511	GAS2L2	Q8NHY3	880 aa		31.93	■■■□□ 2.7
RAB40C-209	ENST00000565511	AFDN	P55196	1824 aa	Known RBP	31.93	■■■□□ 2.7
RAB40C-209	ENST00000565511	GNAT3	A8MTJ3	354 aa		31.92	■■■□□ 2.7
RAB40C-209	ENST00000565511	TGFB2	P61812	414 aa		31.92	■■■□□ 2.7
RAB40C-209	ENST00000565511	COL15A1	P39059	1388 aa		31.92	■■■□□ 2.7
RAB40C-209	ENST00000565511	USPL1	Q5W0Q7	1092 aa		31.91	■■■□□ 2.7
RAB40C-209	ENST00000565511	CEMIP	Q8WUJ3	1361 aa		31.9	■■■□□ 2.7
RAB40C-209	ENST00000565511	POLRMT	O00411	1230 aa	Known RBP	31.89	■■■□□ 2.7
RAB40C-209	ENST00000565511	GIGYF1	O75420	1035 aa	Predicted RBP	31.89	■■■□□ 2.7
RAB40C-209	ENST00000565511	VSIG10	Q8N0Z9	540 aa		31.89	■■■□□ 2.7

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