RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 IL13P35225 146 aa23.12■■□□□ 1.29
CLN3-217ENST00000565354 SMARCC1Q92922 1105 aaPredicted RBP23.12■■□□□ 1.29
CLN3-217ENST00000565354 AK7Q96M32 723 aa23.12■■□□□ 1.29
CLN3-217ENST00000565354 IGSF1Q8N6C5 1336 aa23.11■■□□□ 1.29
CLN3-217ENST00000565354 CYP27B1O15528 508 aa23.1■■□□□ 1.29
CLN3-217ENST00000565354 AMIGO3Q86WK7 504 aa23.1■■□□□ 1.29
CLN3-217ENST00000565354 PKD1L3Q7Z443 1732 aa23.1■■□□□ 1.29
CLN3-217ENST00000565354 U2SURPO15042 1029 aaKnown RBP23.09■■□□□ 1.29
CLN3-217ENST00000565354 NUDCQ9Y266 331 aa23.09■■□□□ 1.29
CLN3-217ENST00000565354 MYBBP1AQ9BQG0 1328 aaKnown RBP23.08■■□□□ 1.29
CLN3-217ENST00000565354 NCAPD2Q15021 1401 aa23.08■■□□□ 1.29
CLN3-217ENST00000565354 SULT6B1Q6IMI4 303 aa23.08■■□□□ 1.29
CLN3-217ENST00000565354 COL3A1P02461 1466 aaPredicted RBP23.07■■□□□ 1.28
CLN3-217ENST00000565354 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.07■■□□□ 1.28
CLN3-217ENST00000565354 PHF14O94880 888 aa23.07■■□□□ 1.28
CLN3-217ENST00000565354 WWC3Q9ULE0 1092 aa23.07■■□□□ 1.28
CLN3-217ENST00000565354 PRKRIP1Q9H875 184 aaPredicted RBP23.06■■□□□ 1.28
CLN3-217ENST00000565354 SSFA2P28290 1259 aa23.05■■□□□ 1.28
CLN3-217ENST00000565354 SMIM5Q71RC9 77 aa23.05■■□□□ 1.28
CLN3-217ENST00000565354 PIGBQ92521 554 aa23.05■■□□□ 1.28
CLN3-217ENST00000565354 SPG7Q9UQ90 795 aa23.05■■□□□ 1.28
CLN3-217ENST00000565354 ANP32CO43423 234 aa23.04■■□□□ 1.28
CLN3-217ENST00000565354 HMOX1P09601 288 aa23.04■■□□□ 1.28
CLN3-217ENST00000565354 AEBP1Q8IUX7 1158 aa23.04■■□□□ 1.28
CLN3-217ENST00000565354 CICQ96RK0 1608 aaPredicted RBP23.04■■□□□ 1.28
CLN3-217ENST00000565354 KIF3CO14782 793 aa23.02■■□□□ 1.28
CLN3-217ENST00000565354 NKX1-1Q15270 411 aaPredicted RBP23.02■■□□□ 1.28
CLN3-217ENST00000565354 LINC00116Q8NCU8 138 aa23.02■■□□□ 1.28
CLN3-217ENST00000565354 LOC102724428A0A0B4J2F2 783 aa23.01■■□□□ 1.27
CLN3-217ENST00000565354 SIK1P57059 783 aa23.01■■□□□ 1.27
CLN3-217ENST00000565354 PLEKHO1Q53GL0 409 aaPredicted RBP23.01■■□□□ 1.27
CLN3-217ENST00000565354 KIF13BQ9NQT8 1826 aa23.01■■□□□ 1.27
CLN3-217ENST00000565354 U2AF1L5P0DN76 240 aaPredicted RBP23■■□□□ 1.27
CLN3-217ENST00000565354 U2AF1Q01081 240 aaKnown RBP eCLIP23■■□□□ 1.27
CLN3-217ENST00000565354 KDRP35968 1356 aa23■■□□□ 1.27
CLN3-217ENST00000565354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.99■■□□□ 1.27
CLN3-217ENST00000565354 PLEKHG2Q9H7P9 1386 aa22.99■■□□□ 1.27
CLN3-217ENST00000565354 AMOTQ4VCS5 1084 aa22.98■■□□□ 1.27
CLN3-217ENST00000565354 KIAA1551Q9HCM1 1747 aa22.98■■□□□ 1.27
CLN3-217ENST00000565354 N4BP2Q86UW6 1770 aaPredicted RBP22.97■■□□□ 1.27
CLN3-217ENST00000565354 GNPATO15228 680 aa22.97■■□□□ 1.27
CLN3-217ENST00000565354 ITPK1Q13572 414 aa22.96■■□□□ 1.27
CLN3-217ENST00000565354 TMOD3Q9NYL9 352 aa22.96■■□□□ 1.27
CLN3-217ENST00000565354 ASAP1Q9ULH1 1129 aa22.96■■□□□ 1.27
CLN3-217ENST00000565354 PXDNLA1KZ92 1463 aa22.95■■□□□ 1.26
CLN3-217ENST00000565354 MMP10P09238 476 aa22.95■■□□□ 1.26
CLN3-217ENST00000565354 APLP1P51693 650 aa22.95■■□□□ 1.26
CLN3-217ENST00000565354 ZNF530Q6P9A1 599 aaPredicted RBP22.95■■□□□ 1.26
CLN3-217ENST00000565354 IFNL2Q8IZJ0 200 aa22.95■■□□□ 1.26
CLN3-217ENST00000565354 ATP6V1AP38606 617 aa22.94■■□□□ 1.26
CLN3-217ENST00000565354 C1orf141Q5JVX7 400 aa22.94■■□□□ 1.26
CLN3-217ENST00000565354 NEFMP07197 916 aa22.92■■□□□ 1.26
CLN3-217ENST00000565354 TOMM70O94826 608 aa22.91■■□□□ 1.26
CLN3-217ENST00000565354 PHKG2P15735 406 aa22.91■■□□□ 1.26
CLN3-217ENST00000565354 PRKAR2BP31323 418 aa22.91■■□□□ 1.26
CLN3-217ENST00000565354 TGFB2P61812 414 aa22.91■■□□□ 1.26
CLN3-217ENST00000565354 WDR43Q15061 677 aaKnown RBP eCLIP22.91■■□□□ 1.26
CLN3-217ENST00000565354 HSP90AB1P08238 724 aaKnown RBP22.9■■□□□ 1.26
CLN3-217ENST00000565354 RSPH6AQ9H0K4 717 aa22.9■■□□□ 1.26
CLN3-217ENST00000565354 BCS1LQ9Y276 419 aa22.9■■□□□ 1.26
CLN3-217ENST00000565354 BRCA1P38398 1863 aaKnown RBP22.9■■□□□ 1.26
CLN3-217ENST00000565354 FCHSD2O94868 740 aa22.89■■□□□ 1.25
CLN3-217ENST00000565354 DNAJC5GQ8N7S2 189 aa22.89■■□□□ 1.25
CLN3-217ENST00000565354 PNNQ9H307 717 aaKnown RBP22.89■■□□□ 1.25
CLN3-217ENST00000565354 ATG3Q9NT62 314 aa22.89■■□□□ 1.25
CLN3-217ENST00000565354 C10orf71Q711Q0 1435 aa22.89■■□□□ 1.25
CLN3-217ENST00000565354 ZNF831Q5JPB2 1677 aa22.88■■□□□ 1.25
CLN3-217ENST00000565354 A0A0G2JLW4 131 aa22.88■■□□□ 1.25
CLN3-217ENST00000565354 TRAPPC3LQ5T215 181 aa22.88■■□□□ 1.25
CLN3-217ENST00000565354 NLGN1Q8N2Q7 840 aa22.88■■□□□ 1.25
CLN3-217ENST00000565354 RTCBQ9Y3I0 505 aaKnown RBP22.88■■□□□ 1.25
CLN3-217ENST00000565354 GAS2L2Q8NHY3 880 aa22.87■■□□□ 1.25
CLN3-217ENST00000565354 C4AP0C0L4 1744 aa22.86■■□□□ 1.25
CLN3-217ENST00000565354 COL5A3P25940 1745 aaPredicted RBP22.86■■□□□ 1.25
CLN3-217ENST00000565354 MTHFSDQ2M296 383 aaKnown RBP22.86■■□□□ 1.25
CLN3-217ENST00000565354 AKAP4Q5JQC9 854 aa22.86■■□□□ 1.25
CLN3-217ENST00000565354 ARHGAP27Q6ZUM4 889 aa22.86■■□□□ 1.25
CLN3-217ENST00000565354 ARFGEF1Q9Y6D6 1849 aa22.85■■□□□ 1.25
CLN3-217ENST00000565354 NMRK2Q9NPI5 230 aa22.85■■□□□ 1.25
CLN3-217ENST00000565354 WDR90Q96KV7 1748 aa22.85■■□□□ 1.25
CLN3-217ENST00000565354 MAPK8IP3Q9UPT6 1336 aa22.84■■□□□ 1.25
CLN3-217ENST00000565354 ADRA2BP18089 450 aa22.84■■□□□ 1.25
CLN3-217ENST00000565354 DCAF5Q96JK2 942 aa22.84■■□□□ 1.25
CLN3-217ENST00000565354 CCDC87Q9NVE4 849 aa22.84■■□□□ 1.25
CLN3-217ENST00000565354 DPEP1P16444 411 aa22.83■■□□□ 1.25
CLN3-217ENST00000565354 RC3H1Q5TC82 1133 aaKnown RBP22.83■■□□□ 1.25
CLN3-217ENST00000565354 ARHGEF1Q92888 912 aaKnown RBP22.83■■□□□ 1.25
CLN3-217ENST00000565354 SLC4A9Q96Q91 983 aa22.83■■□□□ 1.25
CLN3-217ENST00000565354 MRS2Q9HD23 443 aa22.83■■□□□ 1.25
CLN3-217ENST00000565354 MYH14Q7Z406 1995 aaKnown RBP22.83■■□□□ 1.24
CLN3-217ENST00000565354 GYS1P13807 737 aa22.81■■□□□ 1.24
CLN3-217ENST00000565354 PHACTR3Q96KR7 559 aa22.81■■□□□ 1.24
CLN3-217ENST00000565354 RBM42Q9BTD8 480 aaKnown RBP22.81■■□□□ 1.24
CLN3-217ENST00000565354 CNTNAP4Q9C0A0 1308 aa22.81■■□□□ 1.24
CLN3-217ENST00000565354 ERVV-2B6SEH9 535 aa22.8■■□□□ 1.24
CLN3-217ENST00000565354 RFC4P35249 363 aa22.8■■□□□ 1.24
CLN3-217ENST00000565354 RBM46Q8TBY0 533 aaKnown RBP22.8■■□□□ 1.24
CLN3-217ENST00000565354 PARP3Q9Y6F1 533 aa22.8■■□□□ 1.24
CLN3-217ENST00000565354 RPS6KA4O75676 772 aa22.79■■□□□ 1.24
CLN3-217ENST00000565354 CABP4P57796 275 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms