RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ST20-MTHFSA0A0A6YYL1 179 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 DPEP1P16444 411 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 TMF1P82094 1093 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 ITPK1Q13572 414 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 TRAPPC3LQ5T215 181 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 C9orf131Q5VYM1 1079 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 TNS4Q8IZW8 715 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 NLGN1Q8N2Q7 840 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 CCDC87Q9NVE4 849 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 ASAP1Q9ULH1 1129 aa10.26□□□□□ -0.77
VPS4A-203ENST00000564399 SLC24A1O60721 1099 aa10.25□□□□□ -0.77
VPS4A-203ENST00000564399 NKX1-1Q15270 411 aaPredicted RBP10.25□□□□□ -0.77
VPS4A-203ENST00000564399 JMYQ8N9B5 988 aa10.25□□□□□ -0.77
VPS4A-203ENST00000564399 TESK2Q96S53 571 aa10.25□□□□□ -0.77
VPS4A-203ENST00000564399 RTCBQ9Y3I0 505 aaKnown RBP10.25□□□□□ -0.77
VPS4A-203ENST00000564399 PKD1L3Q7Z443 1732 aa10.24□□□□□ -0.77
VPS4A-203ENST00000564399 KIAA1551Q9HCM1 1747 aa10.24□□□□□ -0.77
VPS4A-203ENST00000564399 PPM1GO15355 546 aaPredicted RBP10.24□□□□□ -0.77
VPS4A-203ENST00000564399 FSTL1Q12841 308 aa10.24□□□□□ -0.77
VPS4A-203ENST00000564399 PARP3Q9Y6F1 533 aa10.24□□□□□ -0.77
VPS4A-203ENST00000564399 KDM2BQ8NHM5 1336 aa10.24□□□□□ -0.77
VPS4A-203ENST00000564399 PLEKHG2Q9H7P9 1386 aa10.24□□□□□ -0.77
VPS4A-203ENST00000564399 RFC4P35249 363 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 ARHGEF1Q92888 912 aaKnown RBP10.23□□□□□ -0.77
VPS4A-203ENST00000564399 RBM42Q9BTD8 480 aaKnown RBP10.23□□□□□ -0.77
VPS4A-203ENST00000564399 RRAGCQ9HB90 399 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 RNF181Q9P0P0 153 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 EMILIN1Q9Y6C2 1016 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 KIF20BQ96Q89 1820 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 ARFGEF1Q9Y6D6 1849 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 KIF24Q5T7B8 1368 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 TONSLQ96HA7 1378 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 BRCA1P38398 1863 aaKnown RBP10.23□□□□□ -0.77
VPS4A-203ENST00000564399 C10orf71Q711Q0 1435 aa10.23□□□□□ -0.77
VPS4A-203ENST00000564399 PRELPP51888 382 aa10.22□□□□□ -0.77
VPS4A-203ENST00000564399 IFNL2Q8IZJ0 200 aa10.22□□□□□ -0.77
VPS4A-203ENST00000564399 ATG3Q9NT62 314 aa10.22□□□□□ -0.77
VPS4A-203ENST00000564399 PIM2Q9P1W9 311 aa10.22□□□□□ -0.77
VPS4A-203ENST00000564399 KCPQ6ZWJ8 1503 aa10.22□□□□□ -0.77
VPS4A-203ENST00000564399 C4AP0C0L4 1744 aa10.21□□□□□ -0.77
VPS4A-203ENST00000564399 SBF1O95248 1867 aa10.21□□□□□ -0.77
VPS4A-203ENST00000564399 GYS1P13807 737 aa10.21□□□□□ -0.77
VPS4A-203ENST00000564399 PHKG2P15735 406 aa10.21□□□□□ -0.77
VPS4A-203ENST00000564399 DALRD3Q5D0E6 543 aaKnown RBP10.21□□□□□ -0.77
VPS4A-203ENST00000564399 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.21□□□□□ -0.77
VPS4A-203ENST00000564399 RPS6KA4O75676 772 aa10.2□□□□□ -0.78
VPS4A-203ENST00000564399 SLC34A2O95436 690 aa10.2□□□□□ -0.78
VPS4A-203ENST00000564399 KCNA3P22001 575 aa10.2□□□□□ -0.78
VPS4A-203ENST00000564399 RC3H1Q5TC82 1133 aaKnown RBP10.2□□□□□ -0.78
VPS4A-203ENST00000564399 MYH14Q7Z406 1995 aaKnown RBP10.2□□□□□ -0.78
VPS4A-203ENST00000564399 SMC1BQ8NDV3 1235 aa10.2□□□□□ -0.78
VPS4A-203ENST00000564399 EYA1Q99502 592 aa10.2□□□□□ -0.78
VPS4A-203ENST00000564399 DCAF5Q96JK2 942 aa10.19□□□□□ -0.78
VPS4A-203ENST00000564399 TNRC6CQ9HCJ0 1690 aaKnown RBP10.18□□□□□ -0.78
VPS4A-203ENST00000564399 CNTNAP4Q9C0A0 1308 aa10.18□□□□□ -0.78
VPS4A-203ENST00000564399 HSPA1AP0DMV8 641 aaKnown RBP10.18□□□□□ -0.78
VPS4A-203ENST00000564399 HSPA1BP0DMV9 641 aaKnown RBP10.18□□□□□ -0.78
VPS4A-203ENST00000564399 SLC4A9Q96Q91 983 aa10.18□□□□□ -0.78
VPS4A-203ENST00000564399 NCAPD2Q15021 1401 aa10.17□□□□□ -0.78
VPS4A-203ENST00000564399 CCDC88AQ3V6T2 1871 aa10.17□□□□□ -0.78
VPS4A-203ENST00000564399 KDRP35968 1356 aa10.17□□□□□ -0.78
VPS4A-203ENST00000564399 WASHC2AQ641Q2 1341 aa10.17□□□□□ -0.78
VPS4A-203ENST00000564399 ERVV-2B6SEH9 535 aa10.17□□□□□ -0.78
VPS4A-203ENST00000564399 CHRNA5P30532 468 aa10.17□□□□□ -0.78
VPS4A-203ENST00000564399 CDCA8Q53HL2 280 aa10.17□□□□□ -0.78
VPS4A-203ENST00000564399 SRP68Q9UHB9 627 aaKnown RBP10.17□□□□□ -0.78
VPS4A-203ENST00000564399 COL5A3P25940 1745 aaPredicted RBP10.16□□□□□ -0.78
VPS4A-203ENST00000564399 PTCD1O75127 700 aaKnown RBP10.16□□□□□ -0.78
VPS4A-203ENST00000564399 HSP90AB1P08238 724 aaKnown RBP10.16□□□□□ -0.78
VPS4A-203ENST00000564399 VEGFAP15692 232 aaPredicted RBP10.16□□□□□ -0.78
VPS4A-203ENST00000564399 CABP4P57796 275 aa10.16□□□□□ -0.78
VPS4A-203ENST00000564399 FKBP8Q14318 412 aa10.16□□□□□ -0.78
VPS4A-203ENST00000564399 ZNF831Q5JPB2 1677 aa10.15□□□□□ -0.78
VPS4A-203ENST00000564399 CRKLP46109 303 aaKnown RBP10.15□□□□□ -0.78
VPS4A-203ENST00000564399 RASSF7Q02833 373 aa10.15□□□□□ -0.78
VPS4A-203ENST00000564399 DDR1Q08345 913 aa10.15□□□□□ -0.78
VPS4A-203ENST00000564399 CARD14Q9BXL6 1004 aa10.15□□□□□ -0.78
VPS4A-203ENST00000564399 PLEKHO1Q53GL0 409 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-203ENST00000564399 ANKRD26Q9UPS8 1709 aa10.13□□□□□ -0.79
VPS4A-203ENST00000564399 USP42Q9H9J4 1324 aaKnown RBP10.13□□□□□ -0.79
VPS4A-203ENST00000564399 ZC3H4Q9UPT8 1303 aaKnown RBP10.13□□□□□ -0.79
VPS4A-203ENST00000564399 PCNTO95613 3336 aa10.13□□□□□ -0.79
VPS4A-203ENST00000564399 GLTPD2A6NH11 291 aa10.13□□□□□ -0.79
VPS4A-203ENST00000564399 ZPR1O75312 459 aa10.13□□□□□ -0.79
VPS4A-203ENST00000564399 LMNB1P20700 586 aa10.13□□□□□ -0.79
VPS4A-203ENST00000564399 TNNT2P45379 298 aaPredicted RBP10.13□□□□□ -0.79
VPS4A-203ENST00000564399 EIF4A2Q14240 407 aaKnown RBP10.13□□□□□ -0.79
VPS4A-203ENST00000564399 ZNF530Q6P9A1 599 aaPredicted RBP10.13□□□□□ -0.79
VPS4A-203ENST00000564399 POLKQ9UBT6 870 aa10.13□□□□□ -0.79
VPS4A-203ENST00000564399 POLRMTO00411 1230 aaKnown RBP10.12□□□□□ -0.79
VPS4A-203ENST00000564399 MTHFSP49914 203 aa10.12□□□□□ -0.79
VPS4A-203ENST00000564399 TM4SF1P30408 202 aa10.11□□□□□ -0.79
VPS4A-203ENST00000564399 C1orf141Q5JVX7 400 aa10.11□□□□□ -0.79
VPS4A-203ENST00000564399 USPL1Q5W0Q7 1092 aa10.11□□□□□ -0.79
VPS4A-203ENST00000564399 DPY19L2Q6NUT2 758 aa10.11□□□□□ -0.79
VPS4A-203ENST00000564399 NFATC2IPQ8NCF5 419 aa10.11□□□□□ -0.79
VPS4A-203ENST00000564399 AFDNP55196 1824 aaKnown RBP10.11□□□□□ -0.79
VPS4A-203ENST00000564399 AMOTQ4VCS5 1084 aa10.1□□□□□ -0.79
VPS4A-203ENST00000564399 TTLL6Q8N841 843 aa10.1□□□□□ -0.79
VPS4A-203ENST00000564399 KDM6AO15550 1401 aaPredicted RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms