RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	USHBP1	Q8N6Y0	703 aa		13.73	□□□□□ -0.21
TCF4-222	ENST00000564228	ANKRD24	Q8TF21	1146 aa		13.73	□□□□□ -0.21
TCF4-222	ENST00000564228	ANP32B	Q92688	251 aa	Known RBP	13.73	□□□□□ -0.21
TCF4-222	ENST00000564228	PHACTR3	Q96KR7	559 aa		13.73	□□□□□ -0.21
TCF4-222	ENST00000564228	PRDM11	Q9NQV5	511 aa		13.73	□□□□□ -0.21
TCF4-222	ENST00000564228	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.73	□□□□□ -0.21
TCF4-222	ENST00000564228	CPD	O75976	1380 aa		13.73	□□□□□ -0.21
TCF4-222	ENST00000564228	TMPO	P42166	694 aa	Known RBP	13.72	□□□□□ -0.21
TCF4-222	ENST00000564228	RBM10	P98175	930 aa	Known RBP	13.72	□□□□□ -0.21
TCF4-222	ENST00000564228	PANK1	Q8TE04	598 aa		13.72	□□□□□ -0.21
TCF4-222	ENST00000564228	TPRN	Q4KMQ1	711 aa		13.72	□□□□□ -0.21
TCF4-222	ENST00000564228	RAB3GAP1	Q15042	981 aa		13.71	□□□□□ -0.21
TCF4-222	ENST00000564228	NBPF6	Q5VWK0	638 aa		13.71	□□□□□ -0.21
TCF4-222	ENST00000564228	SPRYD3	Q8NCJ5	442 aa		13.71	□□□□□ -0.21
TCF4-222	ENST00000564228	TNPO1	Q92973	898 aa	Known RBP	13.71	□□□□□ -0.21
TCF4-222	ENST00000564228	NBPF4	Q96M43	638 aa		13.71	□□□□□ -0.21
TCF4-222	ENST00000564228	ABCC6	O95255	1503 aa		13.71	□□□□□ -0.22
TCF4-222	ENST00000564228	ZNF500	O60304	480 aa	Predicted RBP	13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	NASP	P49321	788 aa	Predicted RBP	13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	WWC1	Q8IX03	1113 aa		13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	PCDHB15	Q9Y5E8	787 aa		13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	FAM208A	Q9UK61	1670 aa	Known RBP	13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	ERBB3	P21860	1342 aa		13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	KDR	P35968	1356 aa		13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	LMO7	Q8WWI1	1683 aa		13.7	□□□□□ -0.22
TCF4-222	ENST00000564228	DYNC1I1	O14576	645 aa		13.69	□□□□□ -0.22
TCF4-222	ENST00000564228	CSB-PGBD3	P0DP91	1061 aa		13.69	□□□□□ -0.22
TCF4-222	ENST00000564228	RBM25	P49756	843 aa	Known RBP	13.69	□□□□□ -0.22
TCF4-222	ENST00000564228	CLEC17A	Q6ZS10	378 aa		13.69	□□□□□ -0.22
TCF4-222	ENST00000564228	CAMTA1	Q9Y6Y1	1673 aa		13.69	□□□□□ -0.22
TCF4-222	ENST00000564228	NFE2L2	Q16236	605 aa		13.68	□□□□□ -0.22
TCF4-222	ENST00000564228	UTP14C	Q5TAP6	766 aa	Known RBP	13.68	□□□□□ -0.22
TCF4-222	ENST00000564228	MYCN	P04198	464 aa	Predicted RBP	13.68	□□□□□ -0.22
TCF4-222	ENST00000564228	CSPP1	Q1MSJ5	1256 aa		13.68	□□□□□ -0.22
TCF4-222	ENST00000564228	NLRP2	Q9NX02	1062 aa		13.68	□□□□□ -0.22
TCF4-222	ENST00000564228	FAM83G	A6ND36	823 aa		13.67	□□□□□ -0.22
TCF4-222	ENST00000564228	MCM5	P33992	734 aa		13.67	□□□□□ -0.22
TCF4-222	ENST00000564228	CCDC27	Q2M243	656 aa		13.67	□□□□□ -0.22
TCF4-222	ENST00000564228	TRIM35	Q9UPQ4	493 aa		13.67	□□□□□ -0.22
TCF4-222	ENST00000564228	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	NUTM2E	B1AL46	878 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	RARS	P54136	660 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	MFAP1	P55081	439 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	NOL7	Q9UMY1	257 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	COL14A1	Q05707	1796 aa	Known RBP	13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	GOLGA6L22	H0YM25	854 aa		13.66	□□□□□ -0.22
TCF4-222	ENST00000564228	ADAMTS2	O95450	1211 aa		13.65	□□□□□ -0.22
TCF4-222	ENST00000564228	ZNF445	P59923	1031 aa		13.65	□□□□□ -0.22
TCF4-222	ENST00000564228	KLHL40	Q2TBA0	621 aa		13.65	□□□□□ -0.22
TCF4-222	ENST00000564228	STRN4	Q9NRL3	753 aa		13.65	□□□□□ -0.22
TCF4-222	ENST00000564228	COL5A2	P05997	1499 aa	Predicted RBP	13.65	□□□□□ -0.22
TCF4-222	ENST00000564228	MTHFSD	Q2M296	383 aa	Known RBP	13.64	□□□□□ -0.23
TCF4-222	ENST00000564228	PDLIM2	Q96JY6	352 aa		13.64	□□□□□ -0.23
TCF4-222	ENST00000564228	PLCH1	Q4KWH8	1693 aa		13.64	□□□□□ -0.23
TCF4-222	ENST00000564228	EVA1C	P58658	441 aa		13.64	□□□□□ -0.23
TCF4-222	ENST00000564228	WDR63	Q8IWG1	891 aa		13.64	□□□□□ -0.23
TCF4-222	ENST00000564228	FAM13B	Q9NYF5	915 aa		13.64	□□□□□ -0.23
TCF4-222	ENST00000564228	NCAPD2	Q15021	1401 aa		13.64	□□□□□ -0.23
TCF4-222	ENST00000564228	UQCRHL	A0A096LP55	91 aa		13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	UQCRH	P07919	91 aa		13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	LMOD3	Q0VAK6	560 aa		13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	HDAC1	Q13547	482 aa	Predicted RBP	13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	TOM1L2	Q6ZVM7	507 aa		13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	THUMPD2	Q9BTF0	503 aa	Known RBP	13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	BTG4	Q9NY30	223 aa		13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	WDR17	Q8IZU2	1322 aa		13.63	□□□□□ -0.23
TCF4-222	ENST00000564228	HSP90AB1	P08238	724 aa	Known RBP	13.62	□□□□□ -0.23
TCF4-222	ENST00000564228	DCTN1	Q14203	1278 aa		13.62	□□□□□ -0.23
TCF4-222	ENST00000564228	GAS2L2	Q8NHY3	880 aa		13.62	□□□□□ -0.23
TCF4-222	ENST00000564228	JCAD	Q9P266	1359 aa		13.62	□□□□□ -0.23
TCF4-222	ENST00000564228	RLBP1	P12271	317 aa		13.62	□□□□□ -0.23
TCF4-222	ENST00000564228	DMTN	Q08495	405 aa		13.62	□□□□□ -0.23
TCF4-222	ENST00000564228	MVP	Q14764	893 aa	Known RBP	13.62	□□□□□ -0.23
TCF4-222	ENST00000564228	NCL	P19338	710 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-222	ENST00000564228	HSPA1L	P34931	641 aa		13.61	□□□□□ -0.23
TCF4-222	ENST00000564228	SASS6	Q6UVJ0	657 aa		13.61	□□□□□ -0.23
TCF4-222	ENST00000564228	RAPGEF4	Q8WZA2	1011 aa		13.61	□□□□□ -0.23
TCF4-222	ENST00000564228	FGD1	P98174	961 aa		13.6	□□□□□ -0.23
TCF4-222	ENST00000564228	LARP1	Q6PKG0	1096 aa	Known RBP	13.6	□□□□□ -0.23
TCF4-222	ENST00000564228	MCM10	Q7L590	875 aa		13.6	□□□□□ -0.23
TCF4-222	ENST00000564228	RTF1	Q92541	710 aa	Known RBP	13.6	□□□□□ -0.23
TCF4-222	ENST00000564228	CCDC94	Q9BW85	323 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-222	ENST00000564228	PARP4	Q9UKK3	1724 aa	Known RBP	13.59	□□□□□ -0.23
TCF4-222	ENST00000564228	MEGF6	O75095	1541 aa		13.59	□□□□□ -0.23
TCF4-222	ENST00000564228	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.59	□□□□□ -0.23
TCF4-222	ENST00000564228	TSR2	Q969E8	191 aa	Known RBP	13.59	□□□□□ -0.23
TCF4-222	ENST00000564228	ZKSCAN5	Q9Y2L8	839 aa		13.59	□□□□□ -0.23
TCF4-222	ENST00000564228	MAP3K5	Q99683	1374 aa		13.59	□□□□□ -0.23
TCF4-222	ENST00000564228	TAT	P17735	454 aa	Predicted RBP	13.58	□□□□□ -0.23
TCF4-222	ENST00000564228	KIF16B	Q96L93	1317 aa		13.58	□□□□□ -0.24
TCF4-222	ENST00000564228	NRAP	Q86VF7	1730 aa		13.58	□□□□□ -0.24
TCF4-222	ENST00000564228	GNAT3	A8MTJ3	354 aa		13.58	□□□□□ -0.24
TCF4-222	ENST00000564228	CT47B1	P0C2W7	299 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-222	ENST00000564228	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-222	ENST00000564228	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.58	□□□□□ -0.24
TCF4-222	ENST00000564228	IL16	Q14005	1332 aa		13.58	□□□□□ -0.24
TCF4-222	ENST00000564228		K7ELQ4	463 aa	Predicted RBP	13.57	□□□□□ -0.24
TCF4-222	ENST00000564228	AMOT	Q4VCS5	1084 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms