RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 YBX3P16989 372 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLK3-211ENST00000563297 SSFA2P28290 1259 aa21.53■■□□□ 1.04
CLK3-211ENST00000563297 DCAF5Q96JK2 942 aa21.53■■□□□ 1.04
CLK3-211ENST00000563297 CD2APQ9Y5K6 639 aa21.53■■□□□ 1.04
CLK3-211ENST00000563297 HSP90AB1P08238 724 aaKnown RBP21.52■■□□□ 1.04
CLK3-211ENST00000563297 AMOTQ4VCS5 1084 aa21.52■■□□□ 1.04
CLK3-211ENST00000563297 AEBP1Q8IUX7 1158 aa21.52■■□□□ 1.04
CLK3-211ENST00000563297 GRIN3BO60391 1043 aa21.51■■□□□ 1.03
CLK3-211ENST00000563297 AMER1Q5JTC6 1135 aaPredicted RBP21.51■■□□□ 1.03
CLK3-211ENST00000563297 ZNF530Q6P9A1 599 aaPredicted RBP21.51■■□□□ 1.03
CLK3-211ENST00000563297 GNPATO15228 680 aa21.5■■□□□ 1.03
CLK3-211ENST00000563297 SLC4A9Q96Q91 983 aa21.5■■□□□ 1.03
CLK3-211ENST00000563297 IL13P35225 146 aa21.49■■□□□ 1.03
CLK3-211ENST00000563297 SULT6B1Q6IMI4 303 aa21.49■■□□□ 1.03
CLK3-211ENST00000563297 KIF7Q2M1P5 1343 aa21.49■■□□□ 1.03
CLK3-211ENST00000563297 CABP4P57796 275 aa21.48■■□□□ 1.03
CLK3-211ENST00000563297 RBM42Q9BTD8 480 aaKnown RBP21.48■■□□□ 1.03
CLK3-211ENST00000563297 MTHFSP49914 203 aa21.47■■□□□ 1.03
CLK3-211ENST00000563297 KDM6AO15550 1401 aaPredicted RBP21.46■■□□□ 1.03
CLK3-211ENST00000563297 KDRP35968 1356 aa21.46■■□□□ 1.03
CLK3-211ENST00000563297 PER1O15534 1290 aaPredicted RBP21.45■■□□□ 1.02
CLK3-211ENST00000563297 C1orf141Q5JVX7 400 aa21.45■■□□□ 1.02
CLK3-211ENST00000563297 TRAPPC3LQ5T215 181 aa21.44■■□□□ 1.02
CLK3-211ENST00000563297 RC3H1Q5TC82 1133 aaKnown RBP21.44■■□□□ 1.02
CLK3-211ENST00000563297 NFATC2IPQ8NCF5 419 aa21.44■■□□□ 1.02
CLK3-211ENST00000563297 RTCBQ9Y3I0 505 aaKnown RBP21.44■■□□□ 1.02
CLK3-211ENST00000563297 ZNF831Q5JPB2 1677 aa21.42■■□□□ 1.02
CLK3-211ENST00000563297 ARHGEF1Q92888 912 aaKnown RBP21.41■■□□□ 1.02
CLK3-211ENST00000563297 CNTNAP4Q9C0A0 1308 aa21.4■■□□□ 1.02
CLK3-211ENST00000563297 MYH14Q7Z406 1995 aaKnown RBP21.4■■□□□ 1.02
CLK3-211ENST00000563297 PTCD1O75127 700 aaKnown RBP21.4■■□□□ 1.02
CLK3-211ENST00000563297 RPS6KA4O75676 772 aa21.4■■□□□ 1.02
CLK3-211ENST00000563297 MMP10P09238 476 aa21.4■■□□□ 1.02
CLK3-211ENST00000563297 C1QTNF8P60827 252 aa21.4■■□□□ 1.02
CLK3-211ENST00000563297 NLGN1Q8N2Q7 840 aa21.39■■□□□ 1.01
CLK3-211ENST00000563297 ADRA2BP18089 450 aa21.38■■□□□ 1.01
CLK3-211ENST00000563297 AKAP4Q5JQC9 854 aa21.38■■□□□ 1.01
CLK3-211ENST00000563297 COL5A3P25940 1745 aaPredicted RBP21.38■■□□□ 1.01
CLK3-211ENST00000563297 HMOX1P09601 288 aa21.37■■□□□ 1.01
CLK3-211ENST00000563297 CC2D1BQ5T0F9 858 aaKnown RBP21.37■■□□□ 1.01
CLK3-211ENST00000563297 LGR6Q9HBX8 967 aa21.37■■□□□ 1.01
CLK3-211ENST00000563297 WWC3Q9ULE0 1092 aa21.37■■□□□ 1.01
CLK3-211ENST00000563297 GYS1P13807 737 aa21.36■■□□□ 1.01
CLK3-211ENST00000563297 RFC4P35249 363 aa21.36■■□□□ 1.01
CLK3-211ENST00000563297 SCN11AQ9UI33 1791 aa21.36■■□□□ 1.01
CLK3-211ENST00000563297 CRKLP46109 303 aaKnown RBP21.35■■□□□ 1.01
CLK3-211ENST00000563297 DIAPH1O60610 1272 aaKnown RBP21.34■■□□□ 1.01
CLK3-211ENST00000563297 GIGYF1O75420 1035 aaPredicted RBP21.34■■□□□ 1.01
CLK3-211ENST00000563297 RNMTO43148 476 aaKnown RBP21.33■■□□□ 1.01
CLK3-211ENST00000563297 SLC52A2Q9HAB3 445 aa21.33■■□□□ 1.01
CLK3-211ENST00000563297 TGFB2P61812 414 aa21.32■■□□□ 1
CLK3-211ENST00000563297 MTHFSDQ2M296 383 aaKnown RBP21.32■■□□□ 1
CLK3-211ENST00000563297 INTS5Q6P9B9 1019 aaKnown RBP21.31■■□□□ 1
CLK3-211ENST00000563297 KIF13BQ9NQT8 1826 aa21.31■■□□□ 1
CLK3-211ENST00000563297 A0A0G2JLW4 131 aa21.3■■□□□ 1
CLK3-211ENST00000563297 PARP3Q9Y6F1 533 aa21.3■■□□□ 1
CLK3-211ENST00000563297 ATP10DQ9P241 1426 aa21.29■■□□□ 1
CLK3-211ENST00000563297 NPC1L1Q9UHC9 1359 aa21.29■■□□□ 1
CLK3-211ENST00000563297 SENP3-EIF4A1A0A087X0R7 540 aa21.29■■□□□ 1
CLK3-211ENST00000563297 SLC39A6Q13433 755 aa21.29■■□□□ 1
CLK3-211ENST00000563297 CNGB1Q14028 1251 aaPredicted RBP21.29■■□□□ 1
CLK3-211ENST00000563297 DNAJC10Q8IXB1 793 aa21.29■■□□□ 1
CLK3-211ENST00000563297 CCDC87Q9NVE4 849 aa21.29■■□□□ 1
CLK3-211ENST00000563297 SRP68Q9UHB9 627 aaKnown RBP21.29■■□□□ 1
CLK3-211ENST00000563297 CICQ96RK0 1608 aaPredicted RBP21.29■■□□□ 1
CLK3-211ENST00000563297 PXDNLA1KZ92 1463 aa21.28■■□□□ 1
CLK3-211ENST00000563297 TJP1Q07157 1748 aa21.28■■□□□ 1
CLK3-211ENST00000563297 VIRMAQ69YN4 1812 aaKnown RBP21.27■■□□□ 1
CLK3-211ENST00000563297 C4AP0C0L4 1744 aa21.27■■□□□ 1
CLK3-211ENST00000563297 ADCY9O60503 1353 aa21.27■■□□□ 1
CLK3-211ENST00000563297 FKBP8Q14318 412 aa21.27■■□□□ 1
CLK3-211ENST00000563297 N4BP2Q86UW6 1770 aaPredicted RBP21.27■■□□□ 1
CLK3-211ENST00000563297 USP42Q9H9J4 1324 aaKnown RBP21.27■□□□□ 0.99
CLK3-211ENST00000563297 C10orf71Q711Q0 1435 aa21.26■□□□□ 0.99
CLK3-211ENST00000563297 KIAA1551Q9HCM1 1747 aa21.26■□□□□ 0.99
CLK3-211ENST00000563297 CYP19A1P11511 503 aaPredicted RBP21.25■□□□□ 0.99
CLK3-211ENST00000563297 DPEP1P16444 411 aa21.25■□□□□ 0.99
CLK3-211ENST00000563297 GPBP1L1Q9HC44 474 aaPredicted RBP21.25■□□□□ 0.99
CLK3-211ENST00000563297 BCS1LQ9Y276 419 aa21.25■□□□□ 0.99
CLK3-211ENST00000563297 MRC1P22897 1456 aa21.25■□□□□ 0.99
CLK3-211ENST00000563297 U2SURPO15042 1029 aaKnown RBP21.23■□□□□ 0.99
CLK3-211ENST00000563297 KCNA3P22001 575 aa21.23■□□□□ 0.99
CLK3-211ENST00000563297 TM4SF1P30408 202 aa21.23■□□□□ 0.99
CLK3-211ENST00000563297 DDR1Q08345 913 aa21.23■□□□□ 0.99
CLK3-211ENST00000563297 COL3A1P02461 1466 aaPredicted RBP21.23■□□□□ 0.99
CLK3-211ENST00000563297 ADAMTS7Q9UKP4 1686 aa21.22■□□□□ 0.99
CLK3-211ENST00000563297 ZNF526Q8TF50 670 aaPredicted RBP21.22■□□□□ 0.99
CLK3-211ENST00000563297 SOS1Q07889 1333 aaPredicted RBP21.22■□□□□ 0.99
CLK3-211ENST00000563297 ZPR1O75312 459 aa21.21■□□□□ 0.99
CLK3-211ENST00000563297 USPL1Q5W0Q7 1092 aa21.21■□□□□ 0.99
CLK3-211ENST00000563297 VSIG10Q8N0Z9 540 aa21.21■□□□□ 0.99
CLK3-211ENST00000563297 IL17REQ8NFR9 667 aa21.21■□□□□ 0.99
CLK3-211ENST00000563297 KCPQ6ZWJ8 1503 aa21.2■□□□□ 0.98
CLK3-211ENST00000563297 FCHSD2O94868 740 aa21.2■□□□□ 0.98
CLK3-211ENST00000563297 GNAT3A8MTJ3 354 aa21.19■□□□□ 0.98
CLK3-211ENST00000563297 POLRMTO00411 1230 aaKnown RBP21.19■□□□□ 0.98
CLK3-211ENST00000563297 ARHGAP27Q6ZUM4 889 aa21.19■□□□□ 0.98
CLK3-211ENST00000563297 ZBTB1Q9Y2K1 713 aa21.19■□□□□ 0.98
CLK3-211ENST00000563297 BRCA1P38398 1863 aaKnown RBP21.18■□□□□ 0.98
CLK3-211ENST00000563297 GAS2L2Q8NHY3 880 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms