RNA–Protein interactions for RNA: ENST00000561960.5

NSMCE1-202, Transcript of NSE1 homolog, SMC5-SMC6 complex component, humanhuman

TSL 3

Gene NSMCE1, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE1-202ENST00000561960 HSPA6P17066 643 aa16.25■□□□□ 0.19
NSMCE1-202ENST00000561960 RBM42Q9BTD8 480 aaKnown RBP16.25■□□□□ 0.19
NSMCE1-202ENST00000561960 PHKG2P15735 406 aa16.24■□□□□ 0.19
NSMCE1-202ENST00000561960 SSFA2P28290 1259 aa16.24■□□□□ 0.19
NSMCE1-202ENST00000561960 ATG3Q9NT62 314 aa16.24■□□□□ 0.19
NSMCE1-202ENST00000561960 BCS1LQ9Y276 419 aa16.24■□□□□ 0.19
NSMCE1-202ENST00000561960 NCAPD2Q15021 1401 aa16.24■□□□□ 0.19
NSMCE1-202ENST00000561960 VIRMAQ69YN4 1812 aaKnown RBP16.24■□□□□ 0.19
NSMCE1-202ENST00000561960 KIF3CO14782 793 aa16.23■□□□□ 0.19
NSMCE1-202ENST00000561960 SLC4A9Q96Q91 983 aa16.23■□□□□ 0.19
NSMCE1-202ENST00000561960 EIF4A2Q14240 407 aaKnown RBP16.22■□□□□ 0.19
NSMCE1-202ENST00000561960 NKX1-1Q15270 411 aaPredicted RBP16.22■□□□□ 0.19
NSMCE1-202ENST00000561960 HTRA3P83110 453 aa16.21■□□□□ 0.19
NSMCE1-202ENST00000561960 POLKQ9UBT6 870 aa16.21■□□□□ 0.19
NSMCE1-202ENST00000561960 ARHGAP27Q6ZUM4 889 aa16.2■□□□□ 0.18
NSMCE1-202ENST00000561960 IFNL2Q8IZJ0 200 aa16.2■□□□□ 0.18
NSMCE1-202ENST00000561960 NMRK2Q9NPI5 230 aa16.2■□□□□ 0.18
NSMCE1-202ENST00000561960 KIF24Q5T7B8 1368 aa16.2■□□□□ 0.18
NSMCE1-202ENST00000561960 WASHC2AQ641Q2 1341 aa16.19■□□□□ 0.18
NSMCE1-202ENST00000561960 TJP1Q07157 1748 aa16.19■□□□□ 0.18
NSMCE1-202ENST00000561960 ARFGEF1Q9Y6D6 1849 aa16.19■□□□□ 0.18
NSMCE1-202ENST00000561960 KDRP35968 1356 aa16.19■□□□□ 0.18
NSMCE1-202ENST00000561960 DPEP1P16444 411 aa16.19■□□□□ 0.18
NSMCE1-202ENST00000561960 WDR90Q96KV7 1748 aa16.19■□□□□ 0.18
NSMCE1-202ENST00000561960 PTCD1O75127 700 aaKnown RBP16.18■□□□□ 0.18
NSMCE1-202ENST00000561960 ARHGEF1Q92888 912 aaKnown RBP16.18■□□□□ 0.18
NSMCE1-202ENST00000561960 SRP68Q9UHB9 627 aaKnown RBP16.18■□□□□ 0.18
NSMCE1-202ENST00000561960 KDM6AO15550 1401 aaPredicted RBP16.18■□□□□ 0.18
NSMCE1-202ENST00000561960 C10orf71Q711Q0 1435 aa16.18■□□□□ 0.18
NSMCE1-202ENST00000561960 SBF1O95248 1867 aa16.17■□□□□ 0.18
NSMCE1-202ENST00000561960 CCDC88AQ3V6T2 1871 aa16.17■□□□□ 0.18
NSMCE1-202ENST00000561960 FCHSD2O94868 740 aa16.17■□□□□ 0.18
NSMCE1-202ENST00000561960 TRAPPC3LQ5T215 181 aa16.17■□□□□ 0.18
NSMCE1-202ENST00000561960 AEBP1Q8IUX7 1158 aa16.17■□□□□ 0.18
NSMCE1-202ENST00000561960 RTCBQ9Y3I0 505 aaKnown RBP16.17■□□□□ 0.18
NSMCE1-202ENST00000561960 SLC24A1O60721 1099 aa16.16■□□□□ 0.18
NSMCE1-202ENST00000561960 CDCA8Q53HL2 280 aa16.16■□□□□ 0.18
NSMCE1-202ENST00000561960 AFDNP55196 1824 aaKnown RBP16.15■□□□□ 0.18
NSMCE1-202ENST00000561960 GYS1P13807 737 aa16.15■□□□□ 0.18
NSMCE1-202ENST00000561960 ZNF530Q6P9A1 599 aaPredicted RBP16.15■□□□□ 0.18
NSMCE1-202ENST00000561960 SCN11AQ9UI33 1791 aa16.15■□□□□ 0.18
NSMCE1-202ENST00000561960 RFC4P35249 363 aa16.14■□□□□ 0.17
NSMCE1-202ENST00000561960 ZNF831Q5JPB2 1677 aa16.14■□□□□ 0.17
NSMCE1-202ENST00000561960 KCPQ6ZWJ8 1503 aa16.14■□□□□ 0.17
NSMCE1-202ENST00000561960 CHRNA5P30532 468 aa16.13■□□□□ 0.17
NSMCE1-202ENST00000561960 CABP4P57796 275 aa16.13■□□□□ 0.17
NSMCE1-202ENST00000561960 PARP3Q9Y6F1 533 aa16.13■□□□□ 0.17
NSMCE1-202ENST00000561960 FKBP8Q14318 412 aa16.12■□□□□ 0.17
NSMCE1-202ENST00000561960 C9orf131Q5VYM1 1079 aa16.12■□□□□ 0.17
NSMCE1-202ENST00000561960 CCDC87Q9NVE4 849 aa16.12■□□□□ 0.17
NSMCE1-202ENST00000561960 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.12■□□□□ 0.17
NSMCE1-202ENST00000561960 ADAMTS7Q9UKP4 1686 aa16.11■□□□□ 0.17
NSMCE1-202ENST00000561960 KCNA3P22001 575 aa16.11■□□□□ 0.17
NSMCE1-202ENST00000561960 CRKLP46109 303 aaKnown RBP16.11■□□□□ 0.17
NSMCE1-202ENST00000561960 DDR1Q08345 913 aa16.11■□□□□ 0.17
NSMCE1-202ENST00000561960 CACNA1SQ13698 1873 aa16.11■□□□□ 0.17
NSMCE1-202ENST00000561960 TGFB2P61812 414 aa16.1■□□□□ 0.17
NSMCE1-202ENST00000561960 NLGN1Q8N2Q7 840 aa16.1■□□□□ 0.17
NSMCE1-202ENST00000561960 NFATC2IPQ8NCF5 419 aa16.1■□□□□ 0.17
NSMCE1-202ENST00000561960 RPS6KA4O75676 772 aa16.09■□□□□ 0.17
NSMCE1-202ENST00000561960 MTHFSP49914 203 aa16.09■□□□□ 0.17
NSMCE1-202ENST00000561960 RASSF7Q02833 373 aa16.09■□□□□ 0.17
NSMCE1-202ENST00000561960 DCAF5Q96JK2 942 aa16.09■□□□□ 0.17
NSMCE1-202ENST00000561960 CNTNAP4Q9C0A0 1308 aa16.09■□□□□ 0.17
NSMCE1-202ENST00000561960 TIAM2Q8IVF5 1701 aa16.08■□□□□ 0.17
NSMCE1-202ENST00000561960 ERVV-2B6SEH9 535 aa16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 CAPN15O75808 1086 aa16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 TOMM70O94826 608 aa16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 HMGB2P26583 209 aaKnown RBP16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 APLP1P51693 650 aa16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 PLEKHO1Q53GL0 409 aaPredicted RBP16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 PANK3Q9H999 370 aa16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 RNF181Q9P0P0 153 aa16.08■□□□□ 0.16
NSMCE1-202ENST00000561960 DNAJC5GQ8N7S2 189 aa16.07■□□□□ 0.16
NSMCE1-202ENST00000561960 PCGF6Q9BYE7 350 aa16.07■□□□□ 0.16
NSMCE1-202ENST00000561960 RRAGCQ9HB90 399 aa16.07■□□□□ 0.16
NSMCE1-202ENST00000561960 TNRC6CQ9HCJ0 1690 aaKnown RBP16.07■□□□□ 0.16
NSMCE1-202ENST00000561960 C1orf141Q5JVX7 400 aa16.06■□□□□ 0.16
NSMCE1-202ENST00000561960 RC3H1Q5TC82 1133 aaKnown RBP16.06■□□□□ 0.16
NSMCE1-202ENST00000561960 SULT6B1Q6IMI4 303 aa16.06■□□□□ 0.16
NSMCE1-202ENST00000561960 C16orf71Q8IYS4 520 aaPredicted RBP16.06■□□□□ 0.16
NSMCE1-202ENST00000561960 USP42Q9H9J4 1324 aaKnown RBP16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 HSPA5P11021 654 aaKnown RBP16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 SLC39A6Q13433 755 aa16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 CNGB1Q14028 1251 aaPredicted RBP16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 DALRD3Q5D0E6 543 aaKnown RBP16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 DNAJC10Q8IXB1 793 aa16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 PIM2Q9P1W9 311 aa16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 DLEC1Q9Y238 1755 aa16.05■□□□□ 0.16
NSMCE1-202ENST00000561960 HSP90AB1P08238 724 aaKnown RBP16.04■□□□□ 0.16
NSMCE1-202ENST00000561960 ADRA2BP18089 450 aa16.04■□□□□ 0.16
NSMCE1-202ENST00000561960 USPL1Q5W0Q7 1092 aa16.04■□□□□ 0.16
NSMCE1-202ENST00000561960 INTS5Q6P9B9 1019 aaKnown RBP16.04■□□□□ 0.16
NSMCE1-202ENST00000561960 MORC1Q86VD1 984 aa16.04■□□□□ 0.16
NSMCE1-202ENST00000561960 LGR6Q9HBX8 967 aa16.04■□□□□ 0.16
NSMCE1-202ENST00000561960 POLRMTO00411 1230 aaKnown RBP16.02■□□□□ 0.16
NSMCE1-202ENST00000561960 HMOX1P09601 288 aa16.02■□□□□ 0.16
NSMCE1-202ENST00000561960 COL13A1Q5TAT6 717 aaPredicted RBP16.02■□□□□ 0.16
NSMCE1-202ENST00000561960 ANKRD31Q8N7Z5 1873 aa16.01■□□□□ 0.15
NSMCE1-202ENST00000561960 PRELPP51888 382 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms