RNA–Protein interactions for RNA: ENST00000561952.1

GINS3-204, Transcript of GINS complex subunit 3, humanhuman

TSL 2

Gene GINS3, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GINS3-204ENST00000561952 C4BP0C0L5 1744 aa11.27□□□□□ -0.61
GINS3-204ENST00000561952 YY1P25490 414 aa11.27□□□□□ -0.61
GINS3-204ENST00000561952 MSL1Q68DK7 614 aa11.27□□□□□ -0.61
GINS3-204ENST00000561952 SGIP1Q9BQI5 828 aa11.27□□□□□ -0.61
GINS3-204ENST00000561952 ATXN8OSP0DMR3 200 aa11.26□□□□□ -0.61
GINS3-204ENST00000561952 PHKG2P15735 406 aa11.26□□□□□ -0.61
GINS3-204ENST00000561952 POLD1P28340 1107 aa11.26□□□□□ -0.61
GINS3-204ENST00000561952 AEBP1Q8IUX7 1158 aa11.26□□□□□ -0.61
GINS3-204ENST00000561952 PIGBQ92521 554 aa11.26□□□□□ -0.61
GINS3-204ENST00000561952 SYT17Q9BSW7 474 aa11.26□□□□□ -0.61
GINS3-204ENST00000561952 TMOD3Q9NYL9 352 aa11.26□□□□□ -0.61
GINS3-204ENST00000561952 PHF14O94880 888 aa11.25□□□□□ -0.61
GINS3-204ENST00000561952 CC2D1BQ5T0F9 858 aaKnown RBP11.25□□□□□ -0.61
GINS3-204ENST00000561952 SMIM5Q71RC9 77 aa11.25□□□□□ -0.61
GINS3-204ENST00000561952 COL23A1Q86Y22 540 aaPredicted RBP11.25□□□□□ -0.61
GINS3-204ENST00000561952 IFNL2Q8IZJ0 200 aa11.25□□□□□ -0.61
GINS3-204ENST00000561952 PELP1Q8IZL8 1130 aaKnown RBP11.25□□□□□ -0.61
GINS3-204ENST00000561952 IGSF1Q8N6C5 1336 aa11.25□□□□□ -0.61
GINS3-204ENST00000561952 UBR3Q6ZT12 1888 aa11.25□□□□□ -0.61
GINS3-204ENST00000561952 COL24A1Q17RW2 1714 aa11.24□□□□□ -0.61
GINS3-204ENST00000561952 ZNF530Q6P9A1 599 aaPredicted RBP11.24□□□□□ -0.61
GINS3-204ENST00000561952 SMARCC1Q92922 1105 aaPredicted RBP11.24□□□□□ -0.61
GINS3-204ENST00000561952 AK7Q96M32 723 aa11.24□□□□□ -0.61
GINS3-204ENST00000561952 VIRMAQ69YN4 1812 aaKnown RBP11.23□□□□□ -0.61
GINS3-204ENST00000561952 PRKAR2AP13861 404 aaKnown RBP11.23□□□□□ -0.61
GINS3-204ENST00000561952 NKX1-1Q15270 411 aaPredicted RBP11.23□□□□□ -0.61
GINS3-204ENST00000561952 AMER1Q5JTC6 1135 aaPredicted RBP11.23□□□□□ -0.61
GINS3-204ENST00000561952 SULT6B1Q6IMI4 303 aa11.23□□□□□ -0.61
GINS3-204ENST00000561952 SLC16A10Q8TF71 515 aa11.23□□□□□ -0.61
GINS3-204ENST00000561952 ASAP1Q9ULH1 1129 aa11.23□□□□□ -0.61
GINS3-204ENST00000561952 LOC102724428A0A0B4J2F2 783 aa11.22□□□□□ -0.61
GINS3-204ENST00000561952 SIK1P57059 783 aa11.22□□□□□ -0.61
GINS3-204ENST00000561952 PLEKHO1Q53GL0 409 aaPredicted RBP11.22□□□□□ -0.61
GINS3-204ENST00000561952 AMIGO3Q86WK7 504 aa11.22□□□□□ -0.61
GINS3-204ENST00000561952 LINC00116Q8NCU8 138 aa11.22□□□□□ -0.61
GINS3-204ENST00000561952 SPDYE1Q8NFV5 336 aaPredicted RBP11.22□□□□□ -0.61
GINS3-204ENST00000561952 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.22□□□□□ -0.61
GINS3-204ENST00000561952 CHD4Q14839 1912 aa11.21□□□□□ -0.61
GINS3-204ENST00000561952 KDM6AO15550 1401 aaPredicted RBP11.21□□□□□ -0.61
GINS3-204ENST00000561952 ATP6V1AP38606 617 aa11.21□□□□□ -0.61
GINS3-204ENST00000561952 NLGN2Q8NFZ4 835 aa11.21□□□□□ -0.61
GINS3-204ENST00000561952 HMOX1P09601 288 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 MTHFSP49914 203 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 CABP4P57796 275 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 ITPK1Q13572 414 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 GPR162Q16538 588 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 C1orf141Q5JVX7 400 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 ATG3Q9NT62 314 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 SCN11AQ9UI33 1791 aa11.2□□□□□ -0.62
GINS3-204ENST00000561952 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.19□□□□□ -0.62
GINS3-204ENST00000561952 GNPATO15228 680 aa11.19□□□□□ -0.62
GINS3-204ENST00000561952 IL13P35225 146 aa11.19□□□□□ -0.62
GINS3-204ENST00000561952 CLEC11AQ9Y240 323 aa11.19□□□□□ -0.62
GINS3-204ENST00000561952 COL5A3P25940 1745 aaPredicted RBP11.18□□□□□ -0.62
GINS3-204ENST00000561952 MAP3K5Q99683 1374 aa11.18□□□□□ -0.62
GINS3-204ENST00000561952 HSP90AB1P08238 724 aaKnown RBP11.18□□□□□ -0.62
GINS3-204ENST00000561952 AMOTQ4VCS5 1084 aa11.18□□□□□ -0.62
GINS3-204ENST00000561952 DCAF5Q96JK2 942 aa11.18□□□□□ -0.62
GINS3-204ENST00000561952 WWC3Q9ULE0 1092 aa11.18□□□□□ -0.62
GINS3-204ENST00000561952 ERVV-2B6SEH9 535 aa11.17□□□□□ -0.62
GINS3-204ENST00000561952 PER1O15534 1290 aaPredicted RBP11.17□□□□□ -0.62
GINS3-204ENST00000561952 FLAD1Q8NFF5 587 aa11.17□□□□□ -0.62
GINS3-204ENST00000561952 KDRP35968 1356 aa11.16□□□□□ -0.62
GINS3-204ENST00000561952 PLEKHG2Q9H7P9 1386 aa11.16□□□□□ -0.62
GINS3-204ENST00000561952 DIAPH1O60610 1272 aaKnown RBP11.16□□□□□ -0.62
GINS3-204ENST00000561952 PTCD1O75127 700 aaKnown RBP11.16□□□□□ -0.62
GINS3-204ENST00000561952 SLC4A9Q96Q91 983 aa11.16□□□□□ -0.62
GINS3-204ENST00000561952 MYH14Q7Z406 1995 aaKnown RBP11.16□□□□□ -0.62
GINS3-204ENST00000561952 C4AP0C0L4 1744 aa11.15□□□□□ -0.62
GINS3-204ENST00000561952 TJP1Q07157 1748 aa11.15□□□□□ -0.62
GINS3-204ENST00000561952 C19orf67A6NJJ6 358 aa11.15□□□□□ -0.62
GINS3-204ENST00000561952 U2SURPO15042 1029 aaKnown RBP11.15□□□□□ -0.62
GINS3-204ENST00000561952 SSFA2P28290 1259 aa11.15□□□□□ -0.62
GINS3-204ENST00000561952 NFATC2IPQ8NCF5 419 aa11.15□□□□□ -0.62
GINS3-204ENST00000561952 COL3A1P02461 1466 aaPredicted RBP11.14□□□□□ -0.63
GINS3-204ENST00000561952 HMGB2P26583 209 aaKnown RBP11.14□□□□□ -0.63
GINS3-204ENST00000561952 ZNF831Q5JPB2 1677 aa11.14□□□□□ -0.63
GINS3-204ENST00000561952 YBX3P16989 372 aaKnown RBP eCLIP11.13□□□□□ -0.63
GINS3-204ENST00000561952 AKAP4Q5JQC9 854 aa11.13□□□□□ -0.63
GINS3-204ENST00000561952 LGR6Q9HBX8 967 aa11.13□□□□□ -0.63
GINS3-204ENST00000561952 RTCBQ9Y3I0 505 aaKnown RBP11.13□□□□□ -0.63
GINS3-204ENST00000561952 CICQ96RK0 1608 aaPredicted RBP11.13□□□□□ -0.63
GINS3-204ENST00000561952 ZBTB22O15209 634 aa11.12□□□□□ -0.63
GINS3-204ENST00000561952 SLC39A6Q13433 755 aa11.12□□□□□ -0.63
GINS3-204ENST00000561952 MTHFSDQ2M296 383 aaKnown RBP11.12□□□□□ -0.63
GINS3-204ENST00000561952 ZNF784Q8NCA9 323 aaPredicted RBP11.12□□□□□ -0.63
GINS3-204ENST00000561952 N4BP2Q86UW6 1770 aaPredicted RBP11.12□□□□□ -0.63
GINS3-204ENST00000561952 RNMTO43148 476 aaKnown RBP11.11□□□□□ -0.63
GINS3-204ENST00000561952 MMP10P09238 476 aa11.11□□□□□ -0.63
GINS3-204ENST00000561952 TRAPPC3LQ5T215 181 aa11.11□□□□□ -0.63
GINS3-204ENST00000561952 SLC52A2Q9HAB3 445 aa11.11□□□□□ -0.63
GINS3-204ENST00000561952 CNTNAP4Q9C0A0 1308 aa11.1□□□□□ -0.63
GINS3-204ENST00000561952 RFC4P35249 363 aa11.1□□□□□ -0.63
GINS3-204ENST00000561952 CRKLP46109 303 aaKnown RBP11.1□□□□□ -0.63
GINS3-204ENST00000561952 ARHGEF1Q92888 912 aaKnown RBP11.1□□□□□ -0.63
GINS3-204ENST00000561952 CD2APQ9Y5K6 639 aa11.1□□□□□ -0.63
GINS3-204ENST00000561952 NPC1L1Q9UHC9 1359 aa11.1□□□□□ -0.63
GINS3-204ENST00000561952 MRC1P22897 1456 aa11.1□□□□□ -0.63
GINS3-204ENST00000561952 GABBR2O75899 941 aa11.09□□□□□ -0.63
GINS3-204ENST00000561952 DNAJC10Q8IXB1 793 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms