RNA–Protein interactions for RNA: ENST00000561514.1

PALB2-202, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-202ENST00000561514 ERVV-2B6SEH9 535 aa11.59□□□□□ -0.55
PALB2-202ENST00000561514 PPM1GO15355 546 aaPredicted RBP11.59□□□□□ -0.55
PALB2-202ENST00000561514 GIGYF1O75420 1035 aaPredicted RBP11.59□□□□□ -0.55
PALB2-202ENST00000561514 ATG3Q9NT62 314 aa11.59□□□□□ -0.55
PALB2-202ENST00000561514 CICQ96RK0 1608 aaPredicted RBP11.59□□□□□ -0.55
PALB2-202ENST00000561514 ATP10DQ9P241 1426 aa11.59□□□□□ -0.55
PALB2-202ENST00000561514 ZNF831Q5JPB2 1677 aa11.59□□□□□ -0.55
PALB2-202ENST00000561514 ITGB4P16144 1822 aa11.58□□□□□ -0.56
PALB2-202ENST00000561514 ERICH6Q7L0X2 663 aa11.58□□□□□ -0.56
PALB2-202ENST00000561514 SLC4A9Q96Q91 983 aa11.58□□□□□ -0.56
PALB2-202ENST00000561514 KDM6AO15550 1401 aaPredicted RBP11.58□□□□□ -0.56
PALB2-202ENST00000561514 SENP3-EIF4A1A0A087X0R7 540 aa11.57□□□□□ -0.56
PALB2-202ENST00000561514 HSP90AB1P08238 724 aaKnown RBP11.57□□□□□ -0.56
PALB2-202ENST00000561514 RC3H1Q5TC82 1133 aaKnown RBP11.57□□□□□ -0.56
PALB2-202ENST00000561514 DCAF5Q96JK2 942 aa11.57□□□□□ -0.56
PALB2-202ENST00000561514 CNTNAP4Q9C0A0 1308 aa11.57□□□□□ -0.56
PALB2-202ENST00000561514 GNPATO15228 680 aa11.56□□□□□ -0.56
PALB2-202ENST00000561514 PHF14O94880 888 aa11.56□□□□□ -0.56
PALB2-202ENST00000561514 HSPA5P11021 654 aaKnown RBP11.56□□□□□ -0.56
PALB2-202ENST00000561514 ATP6V1AP38606 617 aa11.56□□□□□ -0.56
PALB2-202ENST00000561514 EIF4G2P78344 907 aaKnown RBP eCLIP11.56□□□□□ -0.56
PALB2-202ENST00000561514 C10orf71Q711Q0 1435 aa11.56□□□□□ -0.56
PALB2-202ENST00000561514 SMIM5Q71RC9 77 aa11.56□□□□□ -0.56
PALB2-202ENST00000561514 PXDNLA1KZ92 1463 aa11.56□□□□□ -0.56
PALB2-202ENST00000561514 CEP350Q5VT06 3117 aa11.55□□□□□ -0.56
PALB2-202ENST00000561514 AMOTQ4VCS5 1084 aa11.55□□□□□ -0.56
PALB2-202ENST00000561514 POTEDQ86YR6 584 aa11.55□□□□□ -0.56
PALB2-202ENST00000561514 PANK3Q9H999 370 aa11.55□□□□□ -0.56
PALB2-202ENST00000561514 PLEKHO1Q53GL0 409 aaPredicted RBP11.54□□□□□ -0.56
PALB2-202ENST00000561514 MMP10P09238 476 aa11.53□□□□□ -0.56
PALB2-202ENST00000561514 TNNT2P45379 298 aaPredicted RBP11.53□□□□□ -0.56
PALB2-202ENST00000561514 NLGN1Q8N2Q7 840 aa11.53□□□□□ -0.56
PALB2-202ENST00000561514 RTCBQ9Y3I0 505 aaKnown RBP11.53□□□□□ -0.56
PALB2-202ENST00000561514 RPS6KA4O75676 772 aa11.52□□□□□ -0.57
PALB2-202ENST00000561514 GYS1P13807 737 aa11.52□□□□□ -0.57
PALB2-202ENST00000561514 TGFB2P61812 414 aa11.52□□□□□ -0.57
PALB2-202ENST00000561514 AMER1Q5JTC6 1135 aaPredicted RBP11.52□□□□□ -0.57
PALB2-202ENST00000561514 ZNF530Q6P9A1 599 aaPredicted RBP11.52□□□□□ -0.57
PALB2-202ENST00000561514 AEBP1Q8IUX7 1158 aa11.52□□□□□ -0.57
PALB2-202ENST00000561514 KIAA1551Q9HCM1 1747 aa11.52□□□□□ -0.57
PALB2-202ENST00000561514 MRC1P22897 1456 aa11.51□□□□□ -0.57
PALB2-202ENST00000561514 IL13P35225 146 aa11.51□□□□□ -0.57
PALB2-202ENST00000561514 TRAPPC3LQ5T215 181 aa11.51□□□□□ -0.57
PALB2-202ENST00000561514 ARHGEF1Q92888 912 aaKnown RBP11.51□□□□□ -0.57
PALB2-202ENST00000561514 COL5A3P25940 1745 aaPredicted RBP11.51□□□□□ -0.57
PALB2-202ENST00000561514 KIF13BQ9NQT8 1826 aa11.51□□□□□ -0.57
PALB2-202ENST00000561514 MORC1Q86VD1 984 aa11.5□□□□□ -0.57
PALB2-202ENST00000561514 GPBP1L1Q9HC44 474 aaPredicted RBP11.5□□□□□ -0.57
PALB2-202ENST00000561514 CABP4P57796 275 aa11.49□□□□□ -0.57
PALB2-202ENST00000561514 POLR3GLQ9BT43 218 aa11.49□□□□□ -0.57
PALB2-202ENST00000561514 RBM42Q9BTD8 480 aaKnown RBP11.49□□□□□ -0.57
PALB2-202ENST00000561514 KIF3CO14782 793 aa11.48□□□□□ -0.57
PALB2-202ENST00000561514 MTHFSP49914 203 aa11.48□□□□□ -0.57
PALB2-202ENST00000561514 C1orf141Q5JVX7 400 aa11.48□□□□□ -0.57
PALB2-202ENST00000561514 SULT6B1Q6IMI4 303 aa11.48□□□□□ -0.57
PALB2-202ENST00000561514 USP42Q9H9J4 1324 aaKnown RBP11.48□□□□□ -0.57
PALB2-202ENST00000561514 C4AP0C0L4 1744 aa11.48□□□□□ -0.57
PALB2-202ENST00000561514 HSPA6P17066 643 aa11.47□□□□□ -0.57
PALB2-202ENST00000561514 KCNA3P22001 575 aa11.47□□□□□ -0.57
PALB2-202ENST00000561514 CRKLP46109 303 aaKnown RBP11.47□□□□□ -0.57
PALB2-202ENST00000561514 AKAP4Q5JQC9 854 aa11.47□□□□□ -0.57
PALB2-202ENST00000561514 PCGF6Q9BYE7 350 aa11.47□□□□□ -0.57
PALB2-202ENST00000561514 CCDC87Q9NVE4 849 aa11.47□□□□□ -0.57
PALB2-202ENST00000561514 KNSTRNQ9Y448 316 aa11.47□□□□□ -0.57
PALB2-202ENST00000561514 ADAMTS7Q9UKP4 1686 aa11.46□□□□□ -0.57
PALB2-202ENST00000561514 NPC1L1Q9UHC9 1359 aa11.46□□□□□ -0.57
PALB2-202ENST00000561514 KIF7Q2M1P5 1343 aa11.46□□□□□ -0.57
PALB2-202ENST00000561514 PER1O15534 1290 aaPredicted RBP11.46□□□□□ -0.57
PALB2-202ENST00000561514 RFC4P35249 363 aa11.46□□□□□ -0.57
PALB2-202ENST00000561514 INTS5Q6P9B9 1019 aaKnown RBP11.46□□□□□ -0.57
PALB2-202ENST00000561514 NFATC2IPQ8NCF5 419 aa11.46□□□□□ -0.57
PALB2-202ENST00000561514 TJP1Q07157 1748 aa11.46□□□□□ -0.58
PALB2-202ENST00000561514 MYH14Q7Z406 1995 aaKnown RBP11.45□□□□□ -0.58
PALB2-202ENST00000561514 SOS1Q07889 1333 aaPredicted RBP11.45□□□□□ -0.58
PALB2-202ENST00000561514 PTCD1O75127 700 aaKnown RBP11.45□□□□□ -0.58
PALB2-202ENST00000561514 DPEP1P16444 411 aa11.45□□□□□ -0.58
PALB2-202ENST00000561514 DDR1Q08345 913 aa11.45□□□□□ -0.58
PALB2-202ENST00000561514 SLC52A2Q9HAB3 445 aa11.45□□□□□ -0.58
PALB2-202ENST00000561514 PARP3Q9Y6F1 533 aa11.45□□□□□ -0.58
PALB2-202ENST00000561514 KCPQ6ZWJ8 1503 aa11.45□□□□□ -0.58
PALB2-202ENST00000561514 A0A0G2JLW4 131 aa11.44□□□□□ -0.58
PALB2-202ENST00000561514 FKBP8Q14318 412 aa11.44□□□□□ -0.58
PALB2-202ENST00000561514 SRP68Q9UHB9 627 aaKnown RBP11.44□□□□□ -0.58
PALB2-202ENST00000561514 WWC3Q9ULE0 1092 aa11.44□□□□□ -0.58
PALB2-202ENST00000561514 COL3A1P02461 1466 aaPredicted RBP11.44□□□□□ -0.58
PALB2-202ENST00000561514 POLRMTO00411 1230 aaKnown RBP11.43□□□□□ -0.58
PALB2-202ENST00000561514 RNMTO43148 476 aaKnown RBP11.43□□□□□ -0.58
PALB2-202ENST00000561514 TM4SF1P30408 202 aa11.43□□□□□ -0.58
PALB2-202ENST00000561514 VSIG10Q8N0Z9 540 aa11.43□□□□□ -0.58
PALB2-202ENST00000561514 BCS1LQ9Y276 419 aa11.43□□□□□ -0.58
PALB2-202ENST00000561514 CYP19A1P11511 503 aaPredicted RBP11.42□□□□□ -0.58
PALB2-202ENST00000561514 DNAJC10Q8IXB1 793 aa11.42□□□□□ -0.58
PALB2-202ENST00000561514 LGR6Q9HBX8 967 aa11.42□□□□□ -0.58
PALB2-202ENST00000561514 SCN11AQ9UI33 1791 aa11.41□□□□□ -0.58
PALB2-202ENST00000561514 BRCA1P38398 1863 aaKnown RBP11.41□□□□□ -0.58
PALB2-202ENST00000561514 FCHSD2O94868 740 aa11.41□□□□□ -0.58
PALB2-202ENST00000561514 ZNF526Q8TF50 670 aaPredicted RBP11.41□□□□□ -0.58
PALB2-202ENST00000561514 PIM2Q9P1W9 311 aa11.41□□□□□ -0.58
PALB2-202ENST00000561514 TOMM70O94826 608 aa11.4□□□□□ -0.58
PALB2-202ENST00000561514 MTHFSDQ2M296 383 aaKnown RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms