RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 ITGB2P05107 769 aa9.35□□□□□ -0.91
VPS13C-210ENST00000561258 CENPCQ03188 943 aa9.35□□□□□ -0.91
VPS13C-210ENST00000561258 CCDC85AQ96PX6 553 aaPredicted RBP9.35□□□□□ -0.91
VPS13C-210ENST00000561258 ESYT1Q9BSJ8 1104 aa9.35□□□□□ -0.91
VPS13C-210ENST00000561258 SNRKQ9NRH2 765 aa9.35□□□□□ -0.91
VPS13C-210ENST00000561258 GNRH1P01148 92 aa9.34□□□□□ -0.91
VPS13C-210ENST00000561258 PODNQ7Z5L7 613 aa9.34□□□□□ -0.91
VPS13C-210ENST00000561258 BANK1Q8NDB2 785 aa9.34□□□□□ -0.91
VPS13C-210ENST00000561258 NDUFB9Q9Y6M9 179 aa9.34□□□□□ -0.91
VPS13C-210ENST00000561258 OIP5O43482 229 aa9.33□□□□□ -0.92
VPS13C-210ENST00000561258 UBTFP17480 764 aaKnown RBP9.33□□□□□ -0.92
VPS13C-210ENST00000561258 ZNF592Q92610 1267 aa9.33□□□□□ -0.92
VPS13C-210ENST00000561258 CEP126Q9P2H0 1117 aa9.33□□□□□ -0.92
VPS13C-210ENST00000561258 NSFL1CQ9UNZ2 370 aaKnown RBP9.33□□□□□ -0.92
VPS13C-210ENST00000561258 MSTNO14793 375 aa9.32□□□□□ -0.92
VPS13C-210ENST00000561258 ZSCAN10Q96SZ4 725 aaPredicted RBP9.32□□□□□ -0.92
VPS13C-210ENST00000561258 HRH3Q9Y5N1 445 aa9.32□□□□□ -0.92
VPS13C-210ENST00000561258 SPOCK3Q9BQ16 436 aa9.31□□□□□ -0.92
VPS13C-210ENST00000561258 OXCT2Q9BYC2 517 aaPredicted RBP9.31□□□□□ -0.92
VPS13C-210ENST00000561258 MYCP01106 439 aaPredicted RBP9.3□□□□□ -0.92
VPS13C-210ENST00000561258 SNRPNP63162 240 aaKnown RBP9.3□□□□□ -0.92
VPS13C-210ENST00000561258 FLIIQ13045 1269 aa9.3□□□□□ -0.92
VPS13C-210ENST00000561258 TSGA10IPQ3SY00 556 aa9.3□□□□□ -0.92
VPS13C-210ENST00000561258 C1orf229Q6ZS94 237 aaPredicted RBP9.3□□□□□ -0.92
VPS13C-210ENST00000561258 XAGE2Q96GT9 111 aa9.3□□□□□ -0.92
VPS13C-210ENST00000561258 CFHR5Q9BXR6 569 aa9.3□□□□□ -0.92
VPS13C-210ENST00000561258 FHDC1Q9C0D6 1143 aaPredicted RBP9.3□□□□□ -0.92
VPS13C-210ENST00000561258 C1orf115Q9H7X2 142 aa9.3□□□□□ -0.92
VPS13C-210ENST00000561258 LRRC4BQ9NT99 713 aa9.3□□□□□ -0.92
VPS13C-210ENST00000561258 SHISA8B8ZZ34 492 aa9.29□□□□□ -0.92
VPS13C-210ENST00000561258 SOCS7O14512 581 aa9.29□□□□□ -0.92
VPS13C-210ENST00000561258 STAU1O95793 577 aaKnown RBP9.29□□□□□ -0.92
VPS13C-210ENST00000561258 MAP2K3P46734 347 aa9.29□□□□□ -0.92
VPS13C-210ENST00000561258 UBAP2LQ14157 1087 aaKnown RBP9.29□□□□□ -0.92
VPS13C-210ENST00000561258 KLRG1Q96E93 195 aa9.29□□□□□ -0.92
VPS13C-210ENST00000561258 RUBCNLQ9H714 662 aa9.29□□□□□ -0.92
VPS13C-210ENST00000561258 A0A1B0GTH6 734 aa9.28□□□□□ -0.92
VPS13C-210ENST00000561258 C4orf17Q53FE4 359 aa9.28□□□□□ -0.92
VPS13C-210ENST00000561258 TMEM214Q6NUQ4 689 aaKnown RBP9.28□□□□□ -0.92
VPS13C-210ENST00000561258 PROCP04070 461 aa9.27□□□□□ -0.93
VPS13C-210ENST00000561258 GALNT6Q8NCL4 622 aa9.27□□□□□ -0.93
VPS13C-210ENST00000561258 MSX1P28360 303 aa9.26□□□□□ -0.93
VPS13C-210ENST00000561258 GNASQ5JWF2 1037 aa9.26□□□□□ -0.93
VPS13C-210ENST00000561258 PHF24Q9UPV7 400 aa9.26□□□□□ -0.93
VPS13C-210ENST00000561258 ADAM23O75077 832 aa9.25□□□□□ -0.93
VPS13C-210ENST00000561258 GTF2E1P29083 439 aaPredicted RBP9.25□□□□□ -0.93
VPS13C-210ENST00000561258 TBC1D2BQ9UPU7 963 aa9.25□□□□□ -0.93
VPS13C-210ENST00000561258 APBB1O00213 710 aa9.24□□□□□ -0.93
VPS13C-210ENST00000561258 C2CD2LO14523 706 aa9.24□□□□□ -0.93
VPS13C-210ENST00000561258 CSB-PGBD3P0DP91 1061 aa9.24□□□□□ -0.93
VPS13C-210ENST00000561258 PGBD3Q8N328 593 aa9.24□□□□□ -0.93
VPS13C-210ENST00000561258 ABHD17AQ96GS6 310 aa9.24□□□□□ -0.93
VPS13C-210ENST00000561258 RRAGCQ9HB90 399 aa9.24□□□□□ -0.93
VPS13C-210ENST00000561258 ETNK1Q9HBU6 452 aa9.24□□□□□ -0.93
VPS13C-210ENST00000561258 KRBA1A5PL33 1030 aa9.23□□□□□ -0.93
VPS13C-210ENST00000561258 ESCO1Q5FWF5 840 aa9.23□□□□□ -0.93
VPS13C-210ENST00000561258 PHTF2Q8N3S3 785 aa9.23□□□□□ -0.93
VPS13C-210ENST00000561258 EDARADDQ8WWZ3 215 aa9.23□□□□□ -0.93
VPS13C-210ENST00000561258 DOLKQ9UPQ8 538 aa9.23□□□□□ -0.93
VPS13C-210ENST00000561258 COL8A1P27658 744 aa9.22□□□□□ -0.93
VPS13C-210ENST00000561258 LBRQ14739 615 aaKnown RBP9.22□□□□□ -0.93
VPS13C-210ENST00000561258 MKL2Q9ULH7 1088 aa9.22□□□□□ -0.93
VPS13C-210ENST00000561258 BNIP3LO60238 219 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 BMP4P12644 408 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 CTBSQ01459 385 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 USP4Q13107 963 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 TLR1Q15399 786 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 OXLD1Q5BKU9 147 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 EFHC2Q5JST6 749 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 PPARGC1BQ86YN6 1023 aaKnown RBP9.21□□□□□ -0.94
VPS13C-210ENST00000561258 RHBDD1Q8TEB9 315 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 ARID3AQ99856 593 aa9.21□□□□□ -0.94
VPS13C-210ENST00000561258 GDF2Q9UK05 429 aaPredicted RBP9.21□□□□□ -0.94
VPS13C-210ENST00000561258 ATXN7L1Q9ULK2 861 aaPredicted RBP9.21□□□□□ -0.94
VPS13C-210ENST00000561258 ARID3CA6NKF2 412 aa9.2□□□□□ -0.94
VPS13C-210ENST00000561258 FGFR3P22607 806 aa9.2□□□□□ -0.94
VPS13C-210ENST00000561258 IRF5Q13568 498 aa9.2□□□□□ -0.94
VPS13C-210ENST00000561258 SLFNL1Q499Z3 407 aa9.2□□□□□ -0.94
VPS13C-210ENST00000561258 GOLGA6L1Q8N7Z2 621 aa9.2□□□□□ -0.94
VPS13C-210ENST00000561258 NDFIP2Q9NV92 336 aa9.2□□□□□ -0.94
VPS13C-210ENST00000561258 A6NJR5 290 aa9.19□□□□□ -0.94
VPS13C-210ENST00000561258 HOXB4P17483 251 aaPredicted RBP9.19□□□□□ -0.94
VPS13C-210ENST00000561258 EIF4G2P78344 907 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS13C-210ENST00000561258 RNF135Q8IUD6 432 aa9.19□□□□□ -0.94
VPS13C-210ENST00000561258 GGA1Q9UJY5 639 aa9.19□□□□□ -0.94
VPS13C-210ENST00000561258 PLA2G4AP47712 749 aa9.18□□□□□ -0.94
VPS13C-210ENST00000561258 CRISPLD1Q9H336 500 aa9.18□□□□□ -0.94
VPS13C-210ENST00000561258 SUV39H2Q9H5I1 410 aa9.18□□□□□ -0.94
VPS13C-210ENST00000561258 PODXL2Q9NZ53 605 aa9.18□□□□□ -0.94
VPS13C-210ENST00000561258 AMPD1P23109 780 aa9.17□□□□□ -0.94
VPS13C-210ENST00000561258 MCM6Q14566 821 aa9.17□□□□□ -0.94
VPS13C-210ENST00000561258 LINC00114Q6XXX2 140 aa9.17□□□□□ -0.94
VPS13C-210ENST00000561258 BAG6P46379 1132 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 SCNN1DP51172 638 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 VAC14Q08AM6 782 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 GRIN2CQ14957 1233 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 XP32Q5T750 250 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 SLCO4C1Q6ZQN7 724 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 CLUAP1Q96AJ1 413 aa9.16□□□□□ -0.94
VPS13C-210ENST00000561258 ZCCHC2Q9C0B9 1178 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms