RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 SCN11AQ9UI33 1791 aa21.79■■□□□ 1.08
HDDC3-206ENST00000561036 ABCC4O15439 1325 aa21.79■■□□□ 1.08
HDDC3-206ENST00000561036 IL2RBP14784 551 aa21.78■■□□□ 1.08
HDDC3-206ENST00000561036 EIF4A1P60842 406 aaKnown RBP21.78■■□□□ 1.08
HDDC3-206ENST00000561036 LARP1Q6PKG0 1096 aaKnown RBP21.78■■□□□ 1.08
HDDC3-206ENST00000561036 TMEM57Q8N5G2 664 aa21.78■■□□□ 1.08
HDDC3-206ENST00000561036 UBAP1LF5GYI3 381 aa21.77■■□□□ 1.08
HDDC3-206ENST00000561036 ITPRIPQ8IWB1 547 aa21.77■■□□□ 1.08
HDDC3-206ENST00000561036 ZCRB1Q8TBF4 217 aaKnown RBP21.77■■□□□ 1.08
HDDC3-206ENST00000561036 STK31Q9BXU1 1019 aa21.77■■□□□ 1.08
HDDC3-206ENST00000561036 STRN4Q9NRL3 753 aa21.77■■□□□ 1.08
HDDC3-206ENST00000561036 BTG4Q9NY30 223 aa21.77■■□□□ 1.08
HDDC3-206ENST00000561036 KDM6AO15550 1401 aaPredicted RBP21.77■■□□□ 1.08
HDDC3-206ENST00000561036 PCDH11XQ9BZA7 1347 aa21.77■■□□□ 1.07
HDDC3-206ENST00000561036 PCDH11YQ9BZA8 1340 aa21.77■■□□□ 1.07
HDDC3-206ENST00000561036 MRC1P22897 1456 aa21.77■■□□□ 1.07
HDDC3-206ENST00000561036 TCERG1O14776 1098 aaKnown RBP21.76■■□□□ 1.07
HDDC3-206ENST00000561036 PIP4K2BP78356 416 aa21.76■■□□□ 1.07
HDDC3-206ENST00000561036 CYP27B1O15528 508 aa21.75■■□□□ 1.07
HDDC3-206ENST00000561036 SLC52A2Q9HAB3 445 aa21.75■■□□□ 1.07
HDDC3-206ENST00000561036 CACNA1FO60840 1977 aa21.74■■□□□ 1.07
HDDC3-206ENST00000561036 SLC4A2P04920 1241 aa21.74■■□□□ 1.07
HDDC3-206ENST00000561036 HEG1Q9ULI3 1381 aa21.73■■□□□ 1.07
HDDC3-206ENST00000561036 NKX1-1Q15270 411 aaPredicted RBP21.72■■□□□ 1.07
HDDC3-206ENST00000561036 INTS3Q68E01 1043 aaKnown RBP21.72■■□□□ 1.07
HDDC3-206ENST00000561036 ZBTB40Q9NUA8 1239 aa21.72■■□□□ 1.07
HDDC3-206ENST00000561036 RWDD1Q9H446 243 aaPredicted RBP21.71■■□□□ 1.07
HDDC3-206ENST00000561036 RGS12O14924 1447 aa21.71■■□□□ 1.07
HDDC3-206ENST00000561036 HDGFL1Q5TGJ6 251 aa21.7■■□□□ 1.06
HDDC3-206ENST00000561036 PCDHB15Q9Y5E8 787 aa21.7■■□□□ 1.06
HDDC3-206ENST00000561036 ERVV-2B6SEH9 535 aa21.69■■□□□ 1.06
HDDC3-206ENST00000561036 KCNQ3O43525 872 aa21.69■■□□□ 1.06
HDDC3-206ENST00000561036 PLCH1Q4KWH8 1693 aa21.69■■□□□ 1.06
HDDC3-206ENST00000561036 ZBTB7BO15156 539 aaPredicted RBP21.68■■□□□ 1.06
HDDC3-206ENST00000561036 CERKQ8TCT0 537 aa21.68■■□□□ 1.06
HDDC3-206ENST00000561036 DISP2A7MBM2 1401 aa21.68■■□□□ 1.06
HDDC3-206ENST00000561036 GIGYF1O75420 1035 aaPredicted RBP21.67■■□□□ 1.06
HDDC3-206ENST00000561036 IGHDP01880 384 aa21.67■■□□□ 1.06
HDDC3-206ENST00000561036 CABP4P57796 275 aa21.67■■□□□ 1.06
HDDC3-206ENST00000561036 ZNF790Q6PG37 636 aa21.67■■□□□ 1.06
HDDC3-206ENST00000561036 NFATC2IPQ8NCF5 419 aa21.67■■□□□ 1.06
HDDC3-206ENST00000561036 JCADQ9P266 1359 aa21.66■■□□□ 1.06
HDDC3-206ENST00000561036 HDAC1Q13547 482 aaPredicted RBP21.66■■□□□ 1.06
HDDC3-206ENST00000561036 CDCA7Q9BWT1 371 aaPredicted RBP21.66■■□□□ 1.06
HDDC3-206ENST00000561036 TSHZ2Q9NRE2 1034 aa21.66■■□□□ 1.06
HDDC3-206ENST00000561036 SHANK3Q9BYB0 1731 aa21.66■■□□□ 1.06
HDDC3-206ENST00000561036 CCT4P50991 539 aaKnown RBP21.65■■□□□ 1.06
HDDC3-206ENST00000561036 FLIIQ13045 1269 aa21.65■■□□□ 1.06
HDDC3-206ENST00000561036 G2E3Q7L622 706 aa21.65■■□□□ 1.06
HDDC3-206ENST00000561036 NRAPQ86VF7 1730 aa21.65■■□□□ 1.06
HDDC3-206ENST00000561036 NWD2Q9ULI1 1742 aa21.65■■□□□ 1.06
HDDC3-206ENST00000561036 ADAMTS2O95450 1211 aa21.64■■□□□ 1.05
HDDC3-206ENST00000561036 THRAP3Q9Y2W1 955 aaKnown RBP21.64■■□□□ 1.05
HDDC3-206ENST00000561036 SLIT2O94813 1529 aa21.62■■□□□ 1.05
HDDC3-206ENST00000561036 DBF4Q9UBU7 674 aaPredicted RBP21.62■■□□□ 1.05
HDDC3-206ENST00000561036 PXDNLA1KZ92 1463 aa21.62■■□□□ 1.05
HDDC3-206ENST00000561036 EIF2S2P20042 333 aaKnown RBP21.61■■□□□ 1.05
HDDC3-206ENST00000561036 TTC5Q8N0Z6 440 aa21.61■■□□□ 1.05
HDDC3-206ENST00000561036 NUTM2BA6NNL0 878 aaPredicted RBP21.6■■□□□ 1.05
HDDC3-206ENST00000561036 NUTM2EB1AL46 878 aaPredicted RBP21.6■■□□□ 1.05
HDDC3-206ENST00000561036 FKBP5Q13451 457 aaPredicted RBP21.6■■□□□ 1.05
HDDC3-206ENST00000561036 NUTM2AQ8IVF1 878 aaPredicted RBP21.6■■□□□ 1.05
HDDC3-206ENST00000561036 DDX54Q8TDD1 881 aaKnown RBP21.6■■□□□ 1.05
HDDC3-206ENST00000561036 NECTIN2Q92692 538 aa21.6■■□□□ 1.05
HDDC3-206ENST00000561036 FMNL2Q96PY5 1086 aa21.6■■□□□ 1.05
HDDC3-206ENST00000561036 USP35Q9P2H5 1018 aa21.6■■□□□ 1.05
HDDC3-206ENST00000561036 WNK3Q9BYP7 1800 aa21.59■■□□□ 1.05
HDDC3-206ENST00000561036 SPATA31A1Q5TZJ5 1347 aa21.59■■□□□ 1.05
HDDC3-206ENST00000561036 CHPF2Q9P2E5 772 aa21.59■■□□□ 1.05
HDDC3-206ENST00000561036 SPATA31A6Q5VVP1 1343 aa21.58■■□□□ 1.05
HDDC3-206ENST00000561036 SNRPA1P09661 255 aaKnown RBP21.58■■□□□ 1.05
HDDC3-206ENST00000561036 SLC39A6Q13433 755 aa21.58■■□□□ 1.05
HDDC3-206ENST00000561036 HYPKQ9NX55 129 aa21.58■■□□□ 1.05
HDDC3-206ENST00000561036 N4BP2Q86UW6 1770 aaPredicted RBP21.58■■□□□ 1.04
HDDC3-206ENST00000561036 ZNF496Q96IT1 587 aaPredicted RBP21.57■■□□□ 1.04
HDDC3-206ENST00000561036 LRP6O75581 1613 aa21.57■■□□□ 1.04
HDDC3-206ENST00000561036 EXOC5O00471 708 aa21.56■■□□□ 1.04
HDDC3-206ENST00000561036 DDX21Q9NR30 783 aaKnown RBP eCLIP21.56■■□□□ 1.04
HDDC3-206ENST00000561036 SPATA31A5Q5VU36 1347 aa21.55■■□□□ 1.04
HDDC3-206ENST00000561036 SPATA31A7Q8IWB4 1347 aa21.55■■□□□ 1.04
HDDC3-206ENST00000561036 TNS2Q63HR2 1409 aa21.55■■□□□ 1.04
HDDC3-206ENST00000561036 PAPPAQ13219 1627 aa21.55■■□□□ 1.04
HDDC3-206ENST00000561036 F6X3S4 739 aa21.55■■□□□ 1.04
HDDC3-206ENST00000561036 BARGINQ6ZT62 677 aa21.55■■□□□ 1.04
HDDC3-206ENST00000561036 SMC5Q8IY18 1101 aa21.55■■□□□ 1.04
HDDC3-206ENST00000561036 SLC4A10Q6U841 1118 aa21.54■■□□□ 1.04
HDDC3-206ENST00000561036 PHAXQ9H814 394 aaKnown RBP21.54■■□□□ 1.04
HDDC3-206ENST00000561036 UBR2Q8IWV8 1755 aa21.53■■□□□ 1.04
HDDC3-206ENST00000561036 UNC5CLQ8IV45 518 aa21.53■■□□□ 1.04
HDDC3-206ENST00000561036 RPAP2Q8IXW5 612 aaPredicted RBP21.53■■□□□ 1.04
HDDC3-206ENST00000561036 C5P01031 1676 aa21.53■■□□□ 1.04
HDDC3-206ENST00000561036 ERBB4Q15303 1308 aa21.53■■□□□ 1.04
HDDC3-206ENST00000561036 TOGARAM1Q9Y4F4 1720 aa21.52■■□□□ 1.04
HDDC3-206ENST00000561036 GNAI3P08754 354 aa21.52■■□□□ 1.04
HDDC3-206ENST00000561036 TMOD3Q9NYL9 352 aa21.52■■□□□ 1.04
HDDC3-206ENST00000561036 ATP10DQ9P241 1426 aa21.52■■□□□ 1.04
HDDC3-206ENST00000561036 DDX58O95786 925 aaKnown RBP21.51■■□□□ 1.03
HDDC3-206ENST00000561036 GCC1Q96CN9 775 aa21.51■■□□□ 1.03
HDDC3-206ENST00000561036 GLI3P10071 1580 aa21.51■■□□□ 1.03
HDDC3-206ENST00000561036 LAMB4A4D0S4 1761 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms