RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 KDM3BQ7LBC6 1761 aa16.36■□□□□ 0.21
SNX1-211ENST00000560829 IFNL2Q8IZJ0 200 aa16.35■□□□□ 0.21
SNX1-211ENST00000560829 KDM6AO15550 1401 aaPredicted RBP16.35■□□□□ 0.21
SNX1-211ENST00000560829 CARD10Q9BWT7 1032 aa16.35■□□□□ 0.21
SNX1-211ENST00000560829 PKD1L3Q7Z443 1732 aa16.34■□□□□ 0.21
SNX1-211ENST00000560829 HEG1Q9ULI3 1381 aa16.34■□□□□ 0.21
SNX1-211ENST00000560829 COL22A1Q8NFW1 1626 aaPredicted RBP16.34■□□□□ 0.21
SNX1-211ENST00000560829 TOM1L2Q6ZVM7 507 aa16.33■□□□□ 0.21
SNX1-211ENST00000560829 SKAP1Q86WV1 359 aa16.33■□□□□ 0.21
SNX1-211ENST00000560829 MRC1P22897 1456 aa16.33■□□□□ 0.2
SNX1-211ENST00000560829 HSP90AB1P08238 724 aaKnown RBP16.33■□□□□ 0.2
SNX1-211ENST00000560829 CYP27B1O15528 508 aa16.32■□□□□ 0.2
SNX1-211ENST00000560829 HDGFL1Q5TGJ6 251 aa16.32■□□□□ 0.2
SNX1-211ENST00000560829 G2E3Q7L622 706 aa16.32■□□□□ 0.2
SNX1-211ENST00000560829 DCAF5Q96JK2 942 aa16.32■□□□□ 0.2
SNX1-211ENST00000560829 SLC52A2Q9HAB3 445 aa16.32■□□□□ 0.2
SNX1-211ENST00000560829 KCNQ3O43525 872 aa16.31■□□□□ 0.2
SNX1-211ENST00000560829 SIPA1L3O60292 1781 aaPredicted RBP16.31■□□□□ 0.2
SNX1-211ENST00000560829 FLIIQ13045 1269 aa16.31■□□□□ 0.2
SNX1-211ENST00000560829 SMC5Q8IY18 1101 aa16.31■□□□□ 0.2
SNX1-211ENST00000560829 PARP4Q9UKK3 1724 aaKnown RBP16.29■□□□□ 0.2
SNX1-211ENST00000560829 LARP1Q6PKG0 1096 aaKnown RBP16.29■□□□□ 0.2
SNX1-211ENST00000560829 PCDH11XQ9BZA7 1347 aa16.29■□□□□ 0.2
SNX1-211ENST00000560829 PCDH11YQ9BZA8 1340 aa16.29■□□□□ 0.2
SNX1-211ENST00000560829 GIGYF1O75420 1035 aaPredicted RBP16.29■□□□□ 0.2
SNX1-211ENST00000560829 IL2RBP14784 551 aa16.29■□□□□ 0.2
SNX1-211ENST00000560829 PDE4AP27815 886 aa16.29■□□□□ 0.2
SNX1-211ENST00000560829 CCT4P50991 539 aaKnown RBP16.29■□□□□ 0.2
SNX1-211ENST00000560829 BACH2Q9BYV9 841 aa16.29■□□□□ 0.2
SNX1-211ENST00000560829 EVA1CP58658 441 aa16.28■□□□□ 0.2
SNX1-211ENST00000560829 ZCRB1Q8TBF4 217 aaKnown RBP16.28■□□□□ 0.2
SNX1-211ENST00000560829 PDZRN3Q9UPQ7 1066 aa16.28■□□□□ 0.2
SNX1-211ENST00000560829 PXDNLA1KZ92 1463 aa16.28■□□□□ 0.2
SNX1-211ENST00000560829 SCN11AQ9UI33 1791 aa16.28■□□□□ 0.2
SNX1-211ENST00000560829 ZNF790Q6PG37 636 aa16.27■□□□□ 0.2
SNX1-211ENST00000560829 COL14A1Q05707 1796 aaKnown RBP16.27■□□□□ 0.2
SNX1-211ENST00000560829 COL16A1Q07092 1604 aaPredicted RBP16.27■□□□□ 0.19
SNX1-211ENST00000560829 TOM1O60784 492 aa16.27■□□□□ 0.19
SNX1-211ENST00000560829 NKX1-1Q15270 411 aaPredicted RBP16.27■□□□□ 0.19
SNX1-211ENST00000560829 STRN4Q9NRL3 753 aa16.27■□□□□ 0.19
SNX1-211ENST00000560829 RGS3P49796 1198 aa16.26■□□□□ 0.19
SNX1-211ENST00000560829 FKBP5Q13451 457 aaPredicted RBP16.26■□□□□ 0.19
SNX1-211ENST00000560829 NECTIN2Q92692 538 aa16.26■□□□□ 0.19
SNX1-211ENST00000560829 BTG4Q9NY30 223 aa16.26■□□□□ 0.19
SNX1-211ENST00000560829 NFATC2IPQ8NCF5 419 aa16.25■□□□□ 0.19
SNX1-211ENST00000560829 F6X3S4 739 aa16.25■□□□□ 0.19
SNX1-211ENST00000560829 EIF2S2P20042 333 aaKnown RBP16.25■□□□□ 0.19
SNX1-211ENST00000560829 SIRT2Q8IXJ6 389 aa16.25■□□□□ 0.19
SNX1-211ENST00000560829 DBF4Q9UBU7 674 aaPredicted RBP16.25■□□□□ 0.19
SNX1-211ENST00000560829 ATP10DQ9P241 1426 aa16.24■□□□□ 0.19
SNX1-211ENST00000560829 GCC1Q96CN9 775 aa16.24■□□□□ 0.19
SNX1-211ENST00000560829 C1orf115Q9H7X2 142 aa16.24■□□□□ 0.19
SNX1-211ENST00000560829 CHPF2Q9P2E5 772 aa16.24■□□□□ 0.19
SNX1-211ENST00000560829 VIRMAQ69YN4 1812 aaKnown RBP16.24■□□□□ 0.19
SNX1-211ENST00000560829 FAM161AQ3B820 660 aa16.23■□□□□ 0.19
SNX1-211ENST00000560829 RPAP2Q8IXW5 612 aaPredicted RBP16.23■□□□□ 0.19
SNX1-211ENST00000560829 PHAXQ9H814 394 aaKnown RBP16.23■□□□□ 0.19
SNX1-211ENST00000560829 DISP2A7MBM2 1401 aa16.23■□□□□ 0.19
SNX1-211ENST00000560829 ERVV-2B6SEH9 535 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 SLC4A10Q6U841 1118 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 ANKRD44Q8N8A2 993 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 MEIS3Q99687 375 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 PHLPP1O60346 1717 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 CABP4P57796 275 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 NUCB1Q02818 461 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 CACNA1FO60840 1977 aa16.22■□□□□ 0.19
SNX1-211ENST00000560829 SLC39A6Q13433 755 aa16.21■□□□□ 0.19
SNX1-211ENST00000560829 C8orf34Q49A92 452 aa16.2■□□□□ 0.18
SNX1-211ENST00000560829 CEP85Q6P2H3 762 aa16.2■□□□□ 0.18
SNX1-211ENST00000560829 TTC5Q8N0Z6 440 aa16.2■□□□□ 0.18
SNX1-211ENST00000560829 ZNF496Q96IT1 587 aaPredicted RBP16.2■□□□□ 0.18
SNX1-211ENST00000560829 PRAMEF22A3QJZ6 481 aa16.19■□□□□ 0.18
SNX1-211ENST00000560829 GNAI3P08754 354 aa16.19■□□□□ 0.18
SNX1-211ENST00000560829 FMNL2Q96PY5 1086 aa16.19■□□□□ 0.18
SNX1-211ENST00000560829 DDX21Q9NR30 783 aaKnown RBP eCLIP16.19■□□□□ 0.18
SNX1-211ENST00000560829 HYPKQ9NX55 129 aa16.19■□□□□ 0.18
SNX1-211ENST00000560829 SHANK3Q9BYB0 1731 aa16.19■□□□□ 0.18
SNX1-211ENST00000560829 N4BP2Q86UW6 1770 aaPredicted RBP16.19■□□□□ 0.18
SNX1-211ENST00000560829 DCTPP1Q9H773 170 aa16.18■□□□□ 0.18
SNX1-211ENST00000560829 SNRPA1P09661 255 aaKnown RBP16.18■□□□□ 0.18
SNX1-211ENST00000560829 PDIA6Q15084 440 aa16.18■□□□□ 0.18
SNX1-211ENST00000560829 CHD1LQ86WJ1 897 aa16.18■□□□□ 0.18
SNX1-211ENST00000560829 ADCY9O60503 1353 aa16.17■□□□□ 0.18
SNX1-211ENST00000560829 GNAI2P04899 355 aa16.17■□□□□ 0.18
SNX1-211ENST00000560829 PROSER3Q2NL68 480 aa16.17■□□□□ 0.18
SNX1-211ENST00000560829 DNAAF4Q8WXU2 420 aa16.17■□□□□ 0.18
SNX1-211ENST00000560829 PLCH1Q4KWH8 1693 aa16.17■□□□□ 0.18
SNX1-211ENST00000560829 GLI3P10071 1580 aa16.17■□□□□ 0.18
SNX1-211ENST00000560829 PI4KAP2A4QPH2 592 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 PIP4K2BP78356 416 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 BEND3Q5T5X7 828 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 PI4KAP1Q8N8J0 262 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 DDX54Q8TDD1 881 aaKnown RBP16.16■□□□□ 0.18
SNX1-211ENST00000560829 SRCIN1Q9C0H9 1055 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 ANXA1P04083 346 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 USP44Q9H0E7 712 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 USP35Q9P2H5 1018 aa16.16■□□□□ 0.18
SNX1-211ENST00000560829 TNS2Q63HR2 1409 aa16.15■□□□□ 0.18
SNX1-211ENST00000560829 UBAP1LF5GYI3 381 aa16.15■□□□□ 0.18
SNX1-211ENST00000560829 KSR2Q6VAB6 950 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms