RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 ST20-MTHFSA0A0A6YYL1 179 aa13.97□□□□□ -0.17
TPM1-225ENST00000560679 HTRA3P83110 453 aa13.97□□□□□ -0.17
TPM1-225ENST00000560679 ZNF831Q5JPB2 1677 aa13.96□□□□□ -0.17
TPM1-225ENST00000560679 ASAP1Q9ULH1 1129 aa13.96□□□□□ -0.17
TPM1-225ENST00000560679 BCS1LQ9Y276 419 aa13.96□□□□□ -0.17
TPM1-225ENST00000560679 A0A0G2JLW4 131 aa13.95□□□□□ -0.18
TPM1-225ENST00000560679 COL13A1Q5TAT6 717 aaPredicted RBP13.95□□□□□ -0.18
TPM1-225ENST00000560679 EMILIN1Q9Y6C2 1016 aa13.95□□□□□ -0.18
TPM1-225ENST00000560679 TGFB2P61812 414 aa13.94□□□□□ -0.18
TPM1-225ENST00000560679 JMYQ8N9B5 988 aa13.94□□□□□ -0.18
TPM1-225ENST00000560679 RBM46Q8TBY0 533 aaKnown RBP13.94□□□□□ -0.18
TPM1-225ENST00000560679 KCPQ6ZWJ8 1503 aa13.94□□□□□ -0.18
TPM1-225ENST00000560679 ATP6V1AP38606 617 aa13.93□□□□□ -0.18
TPM1-225ENST00000560679 KLRG1Q96E93 195 aa13.93□□□□□ -0.18
TPM1-225ENST00000560679 SLC4A9Q96Q91 983 aa13.93□□□□□ -0.18
TPM1-225ENST00000560679 TMOD3Q9NYL9 352 aa13.93□□□□□ -0.18
TPM1-225ENST00000560679 TNRC6CQ9HCJ0 1690 aaKnown RBP13.93□□□□□ -0.18
TPM1-225ENST00000560679 TONSLQ96HA7 1378 aa13.93□□□□□ -0.18
TPM1-225ENST00000560679 PLEKHG2Q9H7P9 1386 aa13.93□□□□□ -0.18
TPM1-225ENST00000560679 DPEP1P16444 411 aa13.92□□□□□ -0.18
TPM1-225ENST00000560679 ARHGAP27Q6ZUM4 889 aa13.92□□□□□ -0.18
TPM1-225ENST00000560679 ATG3Q9NT62 314 aa13.92□□□□□ -0.18
TPM1-225ENST00000560679 KCNA3P22001 575 aa13.91□□□□□ -0.18
TPM1-225ENST00000560679 C9orf131Q5VYM1 1079 aa13.91□□□□□ -0.18
TPM1-225ENST00000560679 MYH14Q7Z406 1995 aaKnown RBP13.91□□□□□ -0.18
TPM1-225ENST00000560679 FCHSD2O94868 740 aa13.9□□□□□ -0.18
TPM1-225ENST00000560679 GYS1P13807 737 aa13.9□□□□□ -0.18
TPM1-225ENST00000560679 PHKG2P15735 406 aa13.9□□□□□ -0.18
TPM1-225ENST00000560679 SPG7Q9UQ90 795 aa13.9□□□□□ -0.18
TPM1-225ENST00000560679 SBF1O95248 1867 aa13.89□□□□□ -0.19
TPM1-225ENST00000560679 TMF1P82094 1093 aa13.89□□□□□ -0.19
TPM1-225ENST00000560679 ARHGEF1Q92888 912 aaKnown RBP13.89□□□□□ -0.19
TPM1-225ENST00000560679 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.89□□□□□ -0.192e-12■■□□□ 13.2
TPM1-225ENST00000560679 RTCBQ9Y3I0 505 aaKnown RBP13.89□□□□□ -0.19
TPM1-225ENST00000560679 ADAMTS7Q9UKP4 1686 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 CAPN15O75808 1086 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 FSTL1Q12841 308 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 NLGN1Q8N2Q7 840 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 EYA1Q99502 592 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 CARD14Q9BXL6 1004 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 CCDC87Q9NVE4 849 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 CNTNAP4Q9C0A0 1308 aa13.88□□□□□ -0.19
TPM1-225ENST00000560679 TJP1Q07157 1748 aa13.87□□□□□ -0.19
TPM1-225ENST00000560679 ADRA2BP18089 450 aa13.87□□□□□ -0.19
TPM1-225ENST00000560679 TRAPPC3LQ5T215 181 aa13.87□□□□□ -0.19
TPM1-225ENST00000560679 IFNL2Q8IZJ0 200 aa13.87□□□□□ -0.19
TPM1-225ENST00000560679 DCAF5Q96JK2 942 aa13.87□□□□□ -0.19
TPM1-225ENST00000560679 KDM6AO15550 1401 aaPredicted RBP13.87□□□□□ -0.19
TPM1-225ENST00000560679 WASHC2AQ641Q2 1341 aa13.87□□□□□ -0.19
TPM1-225ENST00000560679 RC3H1Q5TC82 1133 aaKnown RBP13.86□□□□□ -0.19
TPM1-225ENST00000560679 C16orf71Q8IYS4 520 aaPredicted RBP13.86□□□□□ -0.19
TPM1-225ENST00000560679 SLC24A1O60721 1099 aa13.85□□□□□ -0.19
TPM1-225ENST00000560679 DDR1Q08345 913 aa13.85□□□□□ -0.19
TPM1-225ENST00000560679 RNF181Q9P0P0 153 aa13.85□□□□□ -0.19
TPM1-225ENST00000560679 PARP3Q9Y6F1 533 aa13.85□□□□□ -0.19
TPM1-225ENST00000560679 PPM1GO15355 546 aaPredicted RBP13.84□□□□□ -0.19
TPM1-225ENST00000560679 RPS6KA4O75676 772 aa13.84□□□□□ -0.19
TPM1-225ENST00000560679 PRELPP51888 382 aa13.84□□□□□ -0.19
TPM1-225ENST00000560679 TNS4Q8IZW8 715 aa13.84□□□□□ -0.19
TPM1-225ENST00000560679 RBM42Q9BTD8 480 aaKnown RBP13.84□□□□□ -0.19
TPM1-225ENST00000560679 RRAGCQ9HB90 399 aa13.84□□□□□ -0.19
TPM1-225ENST00000560679 KDM2BQ8NHM5 1336 aa13.84□□□□□ -0.19
TPM1-225ENST00000560679 TIAM2Q8IVF5 1701 aa13.84□□□□□ -0.19
TPM1-225ENST00000560679 RFC4P35249 363 aa13.83□□□□□ -0.2
TPM1-225ENST00000560679 PIM2Q9P1W9 311 aa13.83□□□□□ -0.2
TPM1-225ENST00000560679 SRP68Q9UHB9 627 aaKnown RBP13.83□□□□□ -0.2
TPM1-225ENST00000560679 DLEC1Q9Y238 1755 aa13.83□□□□□ -0.2
TPM1-225ENST00000560679 CHRNA5P30532 468 aa13.82□□□□□ -0.2
TPM1-225ENST00000560679 EIF4A2Q14240 407 aaKnown RBP13.82□□□□□ -0.2
TPM1-225ENST00000560679 DALRD3Q5D0E6 543 aaKnown RBP13.82□□□□□ -0.2
TPM1-225ENST00000560679 USP42Q9H9J4 1324 aaKnown RBP13.82□□□□□ -0.2
TPM1-225ENST00000560679 ERVV-2B6SEH9 535 aa13.81□□□□□ -0.2
TPM1-225ENST00000560679 RASSF7Q02833 373 aa13.81□□□□□ -0.2
TPM1-225ENST00000560679 FKBP8Q14318 412 aa13.81□□□□□ -0.2
TPM1-225ENST00000560679 POLKQ9UBT6 870 aa13.81□□□□□ -0.2
TPM1-225ENST00000560679 NRXN2Q9P2S2 1712 aa13.81□□□□□ -0.2
TPM1-225ENST00000560679 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
TPM1-225ENST00000560679 SMC1BQ8NDV3 1235 aa13.8□□□□□ -0.2
TPM1-225ENST00000560679 POLRMTO00411 1230 aaKnown RBP13.79□□□□□ -0.2
TPM1-225ENST00000560679 HSPA1AP0DMV8 641 aaKnown RBP13.79□□□□□ -0.2
TPM1-225ENST00000560679 HSPA1BP0DMV9 641 aaKnown RBP13.79□□□□□ -0.2
TPM1-225ENST00000560679 CRKLP46109 303 aaKnown RBP13.79□□□□□ -0.2
TPM1-225ENST00000560679 ZC3H4Q9UPT8 1303 aaKnown RBP13.78□□□□□ -0.2
TPM1-225ENST00000560679 PTCD1O75127 700 aaKnown RBP13.77□□□□□ -0.21
TPM1-225ENST00000560679 HSP90AB1P08238 724 aaKnown RBP13.76□□□□□ -0.21
TPM1-225ENST00000560679 TM4SF1P30408 202 aa13.76□□□□□ -0.21
TPM1-225ENST00000560679 CDCA8Q53HL2 280 aa13.76□□□□□ -0.21
TPM1-225ENST00000560679 CCDC88AQ3V6T2 1871 aa13.76□□□□□ -0.21
TPM1-225ENST00000560679 SCN11AQ9UI33 1791 aa13.76□□□□□ -0.21
TPM1-225ENST00000560679 ZNF530Q6P9A1 599 aaPredicted RBP13.75□□□□□ -0.21
TPM1-225ENST00000560679 INTS5Q6P9B9 1019 aaKnown RBP13.75□□□□□ -0.21
TPM1-225ENST00000560679 GLTPD2A6NH11 291 aa13.74□□□□□ -0.21
TPM1-225ENST00000560679 CABP4P57796 275 aa13.74□□□□□ -0.21
TPM1-225ENST00000560679 CARMIL3Q8ND23 1372 aa13.73□□□□□ -0.21
TPM1-225ENST00000560679 SOS1Q07889 1333 aaPredicted RBP13.73□□□□□ -0.21
TPM1-225ENST00000560679 POTECB2RU33 542 aa13.73□□□□□ -0.21
TPM1-225ENST00000560679 NFKBIEO00221 500 aa13.73□□□□□ -0.21
TPM1-225ENST00000560679 LMNB1P20700 586 aa13.73□□□□□ -0.21
TPM1-225ENST00000560679 TNNT2P45379 298 aaPredicted RBP13.73□□□□□ -0.21
TPM1-225ENST00000560679 PLEKHO1Q53GL0 409 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms