RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	KLHL34	Q8N239	644 aa		19.01	■□□□□ 0.63
TPM1-223	ENST00000560445	ASAP1	Q9ULH1	1129 aa		19	■□□□□ 0.63
TPM1-223	ENST00000560445	UBR3	Q6ZT12	1888 aa		18.99	■□□□□ 0.63
TPM1-223	ENST00000560445	AKAP4	Q5JQC9	854 aa		18.99	■□□□□ 0.63
TPM1-223	ENST00000560445	AEBP1	Q8IUX7	1158 aa		18.99	■□□□□ 0.63
TPM1-223	ENST00000560445	ATG3	Q9NT62	314 aa		18.99	■□□□□ 0.63
TPM1-223	ENST00000560445	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.98	■□□□□ 0.63
TPM1-223	ENST00000560445	CFAP53	Q96M91	514 aa		18.98	■□□□□ 0.63
TPM1-223	ENST00000560445	GNPAT	O15228	680 aa		18.97	■□□□□ 0.63
TPM1-223	ENST00000560445	ADRA2B	P18089	450 aa		18.97	■□□□□ 0.63
TPM1-223	ENST00000560445	GPR162	Q16538	588 aa		18.97	■□□□□ 0.63
TPM1-223	ENST00000560445	KDM6A	O15550	1401 aa	Predicted RBP	18.97	■□□□□ 0.63
TPM1-223	ENST00000560445	PHF14	O94880	888 aa		18.96	■□□□□ 0.63
TPM1-223	ENST00000560445	RBM42	Q9BTD8	480 aa	Known RBP	18.96	■□□□□ 0.63
TPM1-223	ENST00000560445	CD2AP	Q9Y5K6	639 aa		18.96	■□□□□ 0.63
TPM1-223	ENST00000560445	CHD4	Q14839	1912 aa		18.96	■□□□□ 0.63
TPM1-223	ENST00000560445	RC3H1	Q5TC82	1133 aa	Known RBP	18.95	■□□□□ 0.62
TPM1-223	ENST00000560445	LINC00116	Q8NCU8	138 aa		18.95	■□□□□ 0.62
TPM1-223	ENST00000560445	RTCB	Q9Y3I0	505 aa	Known RBP	18.95	■□□□□ 0.62
TPM1-223	ENST00000560445	SCN11A	Q9UI33	1791 aa		18.95	■□□□□ 0.62
TPM1-223	ENST00000560445	CNTNAP4	Q9C0A0	1308 aa		18.95	■□□□□ 0.62
TPM1-223	ENST00000560445	MSL1	Q68DK7	614 aa		18.94	■□□□□ 0.62
TPM1-223	ENST00000560445	GRIN3B	O60391	1043 aa		18.93	■□□□□ 0.62
TPM1-223	ENST00000560445	ITPK1	Q13572	414 aa		18.93	■□□□□ 0.62
TPM1-223	ENST00000560445	TRAPPC3L	Q5T215	181 aa		18.92	■□□□□ 0.62
TPM1-223	ENST00000560445	NFATC2IP	Q8NCF5	419 aa		18.92	■□□□□ 0.62
TPM1-223	ENST00000560445	NUDC	Q9Y266	331 aa		18.92	■□□□□ 0.62
TPM1-223	ENST00000560445	COL5A3	P25940	1745 aa	Predicted RBP	18.91	■□□□□ 0.62
TPM1-223	ENST00000560445	HMOX1	P09601	288 aa		18.91	■□□□□ 0.62
TPM1-223	ENST00000560445	PELP1	Q8IZL8	1130 aa	Known RBP	18.91	■□□□□ 0.62
TPM1-223	ENST00000560445	GAS2L2	Q8NHY3	880 aa		18.91	■□□□□ 0.62
TPM1-223	ENST00000560445	SLC52A2	Q9HAB3	445 aa		18.91	■□□□□ 0.62
TPM1-223	ENST00000560445	CIC	Q96RK0	1608 aa	Predicted RBP	18.91	■□□□□ 0.62
TPM1-223	ENST00000560445	MRC1	P22897	1456 aa		18.9	■□□□□ 0.62
TPM1-223	ENST00000560445	U2SURP	O15042	1029 aa	Known RBP	18.9	■□□□□ 0.62
TPM1-223	ENST00000560445	NLGN1	Q8N2Q7	840 aa		18.9	■□□□□ 0.62
TPM1-223	ENST00000560445	RFC4	P35249	363 aa		18.89	■□□□□ 0.61
TPM1-223	ENST00000560445	COL3A1	P02461	1466 aa	Predicted RBP	18.89	■□□□□ 0.61
TPM1-223	ENST00000560445	PTCD1	O75127	700 aa	Known RBP	18.88	■□□□□ 0.61
TPM1-223	ENST00000560445	RPS6KA4	O75676	772 aa		18.88	■□□□□ 0.61
TPM1-223	ENST00000560445	RNMT	O43148	476 aa	Known RBP	18.86	■□□□□ 0.61
TPM1-223	ENST00000560445	CNGB1	Q14028	1251 aa	Predicted RBP	18.86	■□□□□ 0.61
TPM1-223	ENST00000560445	NLGN2	Q8NFZ4	835 aa		18.86	■□□□□ 0.61
TPM1-223	ENST00000560445	ADAMTS7	Q9UKP4	1686 aa		18.85	■□□□□ 0.61
TPM1-223	ENST00000560445	MTHFSD	Q2M296	383 aa	Known RBP	18.85	■□□□□ 0.61
TPM1-223	ENST00000560445	TTC5	Q8N0Z6	440 aa		18.85	■□□□□ 0.61
TPM1-223	ENST00000560445	VIRMA	Q69YN4	1812 aa	Known RBP	18.85	■□□□□ 0.61
TPM1-223	ENST00000560445	GNAT3	A8MTJ3	354 aa		18.84	■□□□□ 0.61
TPM1-223	ENST00000560445	TEF	Q10587	303 aa		18.84	■□□□□ 0.61
TPM1-223	ENST00000560445	VSIG10	Q8N0Z9	540 aa		18.84	■□□□□ 0.61
TPM1-223	ENST00000560445	NEFM	P07197	916 aa		18.83	■□□□□ 0.6
TPM1-223	ENST00000560445	MMP10	P09238	476 aa		18.83	■□□□□ 0.6
TPM1-223	ENST00000560445	CRKL	P46109	303 aa	Known RBP	18.83	■□□□□ 0.6
TPM1-223	ENST00000560445	AMIGO3	Q86WK7	504 aa		18.83	■□□□□ 0.6
TPM1-223	ENST00000560445	SLC4A9	Q96Q91	983 aa		18.83	■□□□□ 0.6
TPM1-223	ENST00000560445	ARHGEF1	Q92888	912 aa	Known RBP	18.82	■□□□□ 0.6
TPM1-223	ENST00000560445	CCDC87	Q9NVE4	849 aa		18.82	■□□□□ 0.6
TPM1-223	ENST00000560445	TJP1	Q07157	1748 aa		18.82	■□□□□ 0.6
TPM1-223	ENST00000560445	PARP3	Q9Y6F1	533 aa		18.81	■□□□□ 0.6
TPM1-223	ENST00000560445	STARD3NL	O95772	234 aa		18.8	■□□□□ 0.6
TPM1-223	ENST00000560445	PPP2R1A	P30153	589 aa		18.8	■□□□□ 0.6
TPM1-223	ENST00000560445	ZNF784	Q8NCA9	323 aa	Predicted RBP	18.8	■□□□□ 0.6
TPM1-223	ENST00000560445	TEX13A	Q9BXU3	409 aa	Predicted RBP	18.8	■□□□□ 0.6
TPM1-223	ENST00000560445	LGR6	Q9HBX8	967 aa		18.8	■□□□□ 0.6
TPM1-223	ENST00000560445	C4A	P0C0L4	1744 aa		18.8	■□□□□ 0.6
TPM1-223	ENST00000560445	ZPR1	O75312	459 aa		18.79	■□□□□ 0.6
TPM1-223	ENST00000560445	U2AF1L5	P0DN76	240 aa	Predicted RBP	18.79	■□□□□ 0.6
TPM1-223	ENST00000560445	TGFB2	P61812	414 aa		18.79	■□□□□ 0.6
TPM1-223	ENST00000560445	U2AF1	Q01081	240 aa	Known RBP eCLIP	18.79	■□□□□ 0.6	6e-9	■■■■□ 21.7
TPM1-223	ENST00000560445	MYH14	Q7Z406	1995 aa	Known RBP	18.79	■□□□□ 0.6
TPM1-223	ENST00000560445	USP42	Q9H9J4	1324 aa	Known RBP	18.78	■□□□□ 0.6
TPM1-223	ENST00000560445	FCHSD2	O94868	740 aa		18.78	■□□□□ 0.6
TPM1-223	ENST00000560445	GYS1	P13807	737 aa		18.78	■□□□□ 0.6
TPM1-223	ENST00000560445	PRKAR2B	P31323	418 aa		18.78	■□□□□ 0.6
TPM1-223	ENST00000560445	RTF1	Q92541	710 aa	Known RBP	18.78	■□□□□ 0.6
TPM1-223	ENST00000560445	KIF13B	Q9NQT8	1826 aa		18.77	■□□□□ 0.6
TPM1-223	ENST00000560445	NPM2	Q86SE8	214 aa	Known RBP	18.77	■□□□□ 0.6
TPM1-223	ENST00000560445	DNAJC10	Q8IXB1	793 aa		18.77	■□□□□ 0.6
TPM1-223	ENST00000560445	KCP	Q6ZWJ8	1503 aa		18.77	■□□□□ 0.6
TPM1-223	ENST00000560445	UBR2	Q8IWV8	1755 aa		18.77	■□□□□ 0.6
TPM1-223	ENST00000560445	C10orf71	Q711Q0	1435 aa		18.76	■□□□□ 0.59
TPM1-223	ENST00000560445	YBX3	P16989	372 aa	Known RBP eCLIP	18.76	■□□□□ 0.59
TPM1-223	ENST00000560445	SMIM5	Q71RC9	77 aa		18.76	■□□□□ 0.59
TPM1-223	ENST00000560445	RSPH6A	Q9H0K4	717 aa		18.76	■□□□□ 0.59
TPM1-223	ENST00000560445	PNN	Q9H307	717 aa	Known RBP	18.76	■□□□□ 0.59
TPM1-223	ENST00000560445	UTRN	P46939	3433 aa		18.76	■□□□□ 0.59
TPM1-223	ENST00000560445		A0A087WZG4	1122 aa		18.75	■□□□□ 0.59
TPM1-223	ENST00000560445	CYP19A1	P11511	503 aa	Predicted RBP	18.75	■□□□□ 0.59
TPM1-223	ENST00000560445	SLC39A6	Q13433	755 aa		18.75	■□□□□ 0.59
TPM1-223	ENST00000560445	INTS5	Q6P9B9	1019 aa	Known RBP	18.75	■□□□□ 0.59
TPM1-223	ENST00000560445	SOS1	Q07889	1333 aa	Predicted RBP	18.74	■□□□□ 0.59
TPM1-223	ENST00000560445	CEMIP	Q8WUJ3	1361 aa		18.74	■□□□□ 0.59
TPM1-223	ENST00000560445	HTATSF1	O43719	755 aa	Known RBP	18.74	■□□□□ 0.59
TPM1-223	ENST00000560445	ZNF790	Q6PG37	636 aa		18.74	■□□□□ 0.59
TPM1-223	ENST00000560445	FMNL2	Q96PY5	1086 aa		18.74	■□□□□ 0.59
TPM1-223	ENST00000560445	COL15A1	P39059	1388 aa		18.73	■□□□□ 0.59
TPM1-223	ENST00000560445	SIPA1L3	O60292	1781 aa	Predicted RBP	18.73	■□□□□ 0.59
TPM1-223	ENST00000560445	PXDNL	A1KZ92	1463 aa		18.71	■□□□□ 0.59
TPM1-223	ENST00000560445	HEG1	Q9ULI3	1381 aa		18.71	■□□□□ 0.59
TPM1-223	ENST00000560445	GOLGB1	Q14789	3259 aa	Known RBP	18.71	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms