RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 IL13P35225 146 aa16.98■□□□□ 0.31
SNX1-209ENST00000559961 CNGB1Q14028 1251 aaPredicted RBP16.98■□□□□ 0.31
SNX1-209ENST00000559961 AEBP1Q8IUX7 1158 aa16.98■□□□□ 0.31
SNX1-209ENST00000559961 ZNF784Q8NCA9 323 aaPredicted RBP16.98■□□□□ 0.31
SNX1-209ENST00000559961 NLGN2Q8NFZ4 835 aa16.98■□□□□ 0.31
SNX1-209ENST00000559961 PKD1L3Q7Z443 1732 aa16.98■□□□□ 0.31
SNX1-209ENST00000559961 ANKRD26Q9UPS8 1709 aa16.98■□□□□ 0.31
SNX1-209ENST00000559961 QSER1Q2KHR3 1735 aa16.97■□□□□ 0.31
SNX1-209ENST00000559961 RFC4P35249 363 aa16.97■□□□□ 0.31
SNX1-209ENST00000559961 AKAP4Q5JQC9 854 aa16.97■□□□□ 0.31
SNX1-209ENST00000559961 NFATC2IPQ8NCF5 419 aa16.97■□□□□ 0.31
SNX1-209ENST00000559961 PTCD1O75127 700 aaKnown RBP16.96■□□□□ 0.31
SNX1-209ENST00000559961 ADRA2BP18089 450 aa16.96■□□□□ 0.31
SNX1-209ENST00000559961 ITPK1Q13572 414 aa16.96■□□□□ 0.31
SNX1-209ENST00000559961 RC3H1Q5TC82 1133 aaKnown RBP16.96■□□□□ 0.31
SNX1-209ENST00000559961 NLGN1Q8N2Q7 840 aa16.96■□□□□ 0.31
SNX1-209ENST00000559961 HMOX1P09601 288 aa16.94■□□□□ 0.3
SNX1-209ENST00000559961 C5P01031 1676 aa16.94■□□□□ 0.3
SNX1-209ENST00000559961 CFAP53Q96M91 514 aa16.93■□□□□ 0.3
SNX1-209ENST00000559961 C4BP0C0L5 1744 aa16.93■□□□□ 0.3
SNX1-209ENST00000559961 U2SURPO15042 1029 aaKnown RBP16.92■□□□□ 0.3
SNX1-209ENST00000559961 PER1O15534 1290 aaPredicted RBP16.92■□□□□ 0.3
SNX1-209ENST00000559961 RPS6KA4O75676 772 aa16.92■□□□□ 0.3
SNX1-209ENST00000559961 SMIM5Q71RC9 77 aa16.92■□□□□ 0.3
SNX1-209ENST00000559961 KDRP35968 1356 aa16.91■□□□□ 0.3
SNX1-209ENST00000559961 MMP10P09238 476 aa16.91■□□□□ 0.3
SNX1-209ENST00000559961 PARP3Q9Y6F1 533 aa16.91■□□□□ 0.3
SNX1-209ENST00000559961 CNTNAP4Q9C0A0 1308 aa16.91■□□□□ 0.3
SNX1-209ENST00000559961 ARHGEF1Q92888 912 aaKnown RBP16.9■□□□□ 0.3
SNX1-209ENST00000559961 SLC52A2Q9HAB3 445 aa16.9■□□□□ 0.3
SNX1-209ENST00000559961 CCDC87Q9NVE4 849 aa16.9■□□□□ 0.3
SNX1-209ENST00000559961 ITGB4P16144 1822 aa16.9■□□□□ 0.3
SNX1-209ENST00000559961 TOGARAM1Q9Y4F4 1720 aa16.9■□□□□ 0.3
SNX1-209ENST00000559961 YBX3P16989 372 aaKnown RBP eCLIP16.89■□□□□ 0.29
SNX1-209ENST00000559961 AMIGO3Q86WK7 504 aa16.89■□□□□ 0.29
SNX1-209ENST00000559961 NUDCQ9Y266 331 aa16.89■□□□□ 0.29
SNX1-209ENST00000559961 KDM6AO15550 1401 aaPredicted RBP16.88■□□□□ 0.29
SNX1-209ENST00000559961 ZPR1O75312 459 aa16.88■□□□□ 0.29
SNX1-209ENST00000559961 GIGYF1O75420 1035 aaPredicted RBP16.88■□□□□ 0.29
SNX1-209ENST00000559961 TTC5Q8N0Z6 440 aa16.88■□□□□ 0.29
SNX1-209ENST00000559961 NPC1L1Q9UHC9 1359 aa16.88■□□□□ 0.29
SNX1-209ENST00000559961 RNMTO43148 476 aaKnown RBP16.87■□□□□ 0.29
SNX1-209ENST00000559961 CRKLP46109 303 aaKnown RBP16.87■□□□□ 0.29
SNX1-209ENST00000559961 TGFB2P61812 414 aa16.87■□□□□ 0.29
SNX1-209ENST00000559961 GAS2L2Q8NHY3 880 aa16.87■□□□□ 0.29
SNX1-209ENST00000559961 SLC4A9Q96Q91 983 aa16.87■□□□□ 0.29
SNX1-209ENST00000559961 TUBGCP6Q96RT7 1819 aa16.86■□□□□ 0.29
SNX1-209ENST00000559961 TEFQ10587 303 aa16.86■□□□□ 0.29
SNX1-209ENST00000559961 MTHFSDQ2M296 383 aaKnown RBP16.86■□□□□ 0.29
SNX1-209ENST00000559961 NPM2Q86SE8 214 aaKnown RBP16.86■□□□□ 0.29
SNX1-209ENST00000559961 LGR6Q9HBX8 967 aa16.86■□□□□ 0.29
SNX1-209ENST00000559961 TAF1LQ8IZX4 1826 aa16.84■□□□□ 0.29
SNX1-209ENST00000559961 GNAT3A8MTJ3 354 aa16.84■□□□□ 0.29
SNX1-209ENST00000559961 WWC3Q9ULE0 1092 aa16.84■□□□□ 0.29
SNX1-209ENST00000559961 COL24A1Q17RW2 1714 aa16.84■□□□□ 0.29
SNX1-209ENST00000559961 STARD3NLO95772 234 aa16.83■□□□□ 0.28
SNX1-209ENST00000559961 NEFMP07197 916 aa16.83■□□□□ 0.28
SNX1-209ENST00000559961 GYS1P13807 737 aa16.83■□□□□ 0.28
SNX1-209ENST00000559961 C1QTNF8P60827 252 aa16.83■□□□□ 0.28
SNX1-209ENST00000559961 SLC39A6Q13433 755 aa16.82■□□□□ 0.28
SNX1-209ENST00000559961 DNAJC10Q8IXB1 793 aa16.82■□□□□ 0.28
SNX1-209ENST00000559961 VSIG10Q8N0Z9 540 aa16.82■□□□□ 0.28
SNX1-209ENST00000559961 GPBP1L1Q9HC44 474 aaPredicted RBP16.82■□□□□ 0.28
SNX1-209ENST00000559961 BCS1LQ9Y276 419 aa16.82■□□□□ 0.28
SNX1-209ENST00000559961 RTF1Q92541 710 aaKnown RBP16.81■□□□□ 0.28
SNX1-209ENST00000559961 TEX13AQ9BXU3 409 aaPredicted RBP16.81■□□□□ 0.28
SNX1-209ENST00000559961 CHD4Q14839 1912 aa16.8■□□□□ 0.28
SNX1-209ENST00000559961 UBR3Q6ZT12 1888 aa16.8■□□□□ 0.28
SNX1-209ENST00000559961 A0A087WZG4 1122 aa16.79■□□□□ 0.28
SNX1-209ENST00000559961 SENP3-EIF4A1A0A087X0R7 540 aa16.79■□□□□ 0.28
SNX1-209ENST00000559961 A0A0G2JLW4 131 aa16.79■□□□□ 0.28
SNX1-209ENST00000559961 FCHSD2O94868 740 aa16.79■□□□□ 0.28
SNX1-209ENST00000559961 U2AF1L5P0DN76 240 aaPredicted RBP16.79■□□□□ 0.28
SNX1-209ENST00000559961 U2AF1Q01081 240 aaKnown RBP eCLIP16.79■□□□□ 0.28
SNX1-209ENST00000559961 INTS5Q6P9B9 1019 aaKnown RBP16.79■□□□□ 0.28
SNX1-209ENST00000559961 SRP68Q9UHB9 627 aaKnown RBP16.79■□□□□ 0.28
SNX1-209ENST00000559961 USP42Q9H9J4 1324 aaKnown RBP16.78■□□□□ 0.28
SNX1-209ENST00000559961 CYP19A1P11511 503 aaPredicted RBP16.78■□□□□ 0.28
SNX1-209ENST00000559961 ARHGAP27Q6ZUM4 889 aa16.78■□□□□ 0.28
SNX1-209ENST00000559961 PIM2Q9P1W9 311 aa16.78■□□□□ 0.28
SNX1-209ENST00000559961 DPEP1P16444 411 aa16.77■□□□□ 0.28
SNX1-209ENST00000559961 CANXP27824 592 aaKnown RBP16.77■□□□□ 0.28
SNX1-209ENST00000559961 PRKAR2BP31323 418 aa16.77■□□□□ 0.28
SNX1-209ENST00000559961 FKBP8Q14318 412 aa16.77■□□□□ 0.28
SNX1-209ENST00000559961 ZNF831Q5JPB2 1677 aa16.76■□□□□ 0.27
SNX1-209ENST00000559961 USPL1Q5W0Q7 1092 aa16.76■□□□□ 0.27
SNX1-209ENST00000559961 ZNF526Q8TF50 670 aaPredicted RBP16.76■□□□□ 0.27
SNX1-209ENST00000559961 FMNL2Q96PY5 1086 aa16.76■□□□□ 0.27
SNX1-209ENST00000559961 NARFQ9UHQ1 456 aa16.76■□□□□ 0.27
SNX1-209ENST00000559961 BTBD11A6QL63 1104 aa16.75■□□□□ 0.27
SNX1-209ENST00000559961 DALRD3Q5D0E6 543 aaKnown RBP16.75■□□□□ 0.27
SNX1-209ENST00000559961 ZNF790Q6PG37 636 aa16.75■□□□□ 0.27
SNX1-209ENST00000559961 ZNF330Q9Y3S2 320 aaPredicted RBP16.75■□□□□ 0.27
SNX1-209ENST00000559961 ATP10DQ9P241 1426 aa16.75■□□□□ 0.27
SNX1-209ENST00000559961 SOS1Q07889 1333 aaPredicted RBP16.74■□□□□ 0.27
SNX1-209ENST00000559961 PPP2R1AP30153 589 aa16.74■□□□□ 0.27
SNX1-209ENST00000559961 CICQ96RK0 1608 aaPredicted RBP16.74■□□□□ 0.27
SNX1-209ENST00000559961 NPHP1O15259 732 aa16.73■□□□□ 0.27
SNX1-209ENST00000559961 IL17REQ8NFR9 667 aa16.73■□□□□ 0.27
SNX1-209ENST00000559961 PNNQ9H307 717 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms