RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 RBM42Q9BTD8 480 aaKnown RBP12.57□□□□□ -0.4
HDDC3-204ENST00000559834 GPBP1L1Q9HC44 474 aaPredicted RBP12.57□□□□□ -0.4
HDDC3-204ENST00000559834 MAP2P11137 1827 aaKnown RBP12.57□□□□□ -0.4
HDDC3-204ENST00000559834 ITGB4P16144 1822 aa12.57□□□□□ -0.4
HDDC3-204ENST00000559834 IGSF1Q8N6C5 1336 aa12.57□□□□□ -0.4
HDDC3-204ENST00000559834 PKD1L3Q7Z443 1732 aa12.57□□□□□ -0.4
HDDC3-204ENST00000559834 TAF1LQ8IZX4 1826 aa12.56□□□□□ -0.4
HDDC3-204ENST00000559834 CABP4P57796 275 aa12.56□□□□□ -0.4
HDDC3-204ENST00000559834 RC3H1Q5TC82 1133 aaKnown RBP12.56□□□□□ -0.4
HDDC3-204ENST00000559834 MORC1Q86VD1 984 aa12.56□□□□□ -0.4
HDDC3-204ENST00000559834 MMP10P09238 476 aa12.55□□□□□ -0.4
HDDC3-204ENST00000559834 HSPA5P11021 654 aaKnown RBP12.55□□□□□ -0.4
HDDC3-204ENST00000559834 ADRA2BP18089 450 aa12.55□□□□□ -0.4
HDDC3-204ENST00000559834 C1orf141Q5JVX7 400 aa12.55□□□□□ -0.4
HDDC3-204ENST00000559834 MTHFSP49914 203 aa12.54□□□□□ -0.4
HDDC3-204ENST00000559834 TGFB2P61812 414 aa12.54□□□□□ -0.4
HDDC3-204ENST00000559834 ZNF530Q6P9A1 599 aaPredicted RBP12.54□□□□□ -0.4
HDDC3-204ENST00000559834 TOGARAM1Q9Y4F4 1720 aa12.54□□□□□ -0.4
HDDC3-204ENST00000559834 ATP10DQ9P241 1426 aa12.54□□□□□ -0.4
HDDC3-204ENST00000559834 RPS6KA4O75676 772 aa12.53□□□□□ -0.4
HDDC3-204ENST00000559834 RFC4P35249 363 aa12.53□□□□□ -0.4
HDDC3-204ENST00000559834 ARHGEF1Q92888 912 aaKnown RBP12.53□□□□□ -0.4
HDDC3-204ENST00000559834 WWC3Q9ULE0 1092 aa12.53□□□□□ -0.4
HDDC3-204ENST00000559834 KNSTRNQ9Y448 316 aa12.53□□□□□ -0.4
HDDC3-204ENST00000559834 ANKRD26Q9UPS8 1709 aa12.52□□□□□ -0.41
HDDC3-204ENST00000559834 PARP3Q9Y6F1 533 aa12.52□□□□□ -0.41
HDDC3-204ENST00000559834 UBR3Q6ZT12 1888 aa12.52□□□□□ -0.41
HDDC3-204ENST00000559834 ZNF526Q8TF50 670 aaPredicted RBP12.51□□□□□ -0.41
HDDC3-204ENST00000559834 SLC4A9Q96Q91 983 aa12.51□□□□□ -0.41
HDDC3-204ENST00000559834 CCDC87Q9NVE4 849 aa12.51□□□□□ -0.41
HDDC3-204ENST00000559834 CNTNAP4Q9C0A0 1308 aa12.51□□□□□ -0.41
HDDC3-204ENST00000559834 UTRNP46939 3433 aa12.5□□□□□ -0.41
HDDC3-204ENST00000559834 PTCD1O75127 700 aaKnown RBP12.5□□□□□ -0.41
HDDC3-204ENST00000559834 SULT6B1Q6IMI4 303 aa12.5□□□□□ -0.41
HDDC3-204ENST00000559834 NFATC2IPQ8NCF5 419 aa12.5□□□□□ -0.41
HDDC3-204ENST00000559834 BCS1LQ9Y276 419 aa12.5□□□□□ -0.41
HDDC3-204ENST00000559834 ADCY9O60503 1353 aa12.49□□□□□ -0.41
HDDC3-204ENST00000559834 KDRP35968 1356 aa12.49□□□□□ -0.41
HDDC3-204ENST00000559834 A0A0G2JLW4 131 aa12.49□□□□□ -0.41
HDDC3-204ENST00000559834 GYS1P13807 737 aa12.49□□□□□ -0.41
HDDC3-204ENST00000559834 CCER1Q8TC90 406 aaPredicted RBP12.49□□□□□ -0.41
HDDC3-204ENST00000559834 HSPA6P17066 643 aa12.48□□□□□ -0.41
HDDC3-204ENST00000559834 ARHGAP27Q6ZUM4 889 aa12.48□□□□□ -0.41
HDDC3-204ENST00000559834 AEBP1Q8IUX7 1158 aa12.48□□□□□ -0.41
HDDC3-204ENST00000559834 FCHSD2O94868 740 aa12.47□□□□□ -0.41
HDDC3-204ENST00000559834 DPEP1P16444 411 aa12.47□□□□□ -0.41
HDDC3-204ENST00000559834 IL13P35225 146 aa12.47□□□□□ -0.41
HDDC3-204ENST00000559834 CRKLP46109 303 aaKnown RBP12.47□□□□□ -0.41
HDDC3-204ENST00000559834 AKAP4Q5JQC9 854 aa12.47□□□□□ -0.41
HDDC3-204ENST00000559834 KDM6AO15550 1401 aaPredicted RBP12.45□□□□□ -0.42
HDDC3-204ENST00000559834 ZPR1O75312 459 aa12.45□□□□□ -0.42
HDDC3-204ENST00000559834 PIM2Q9P1W9 311 aa12.45□□□□□ -0.42
HDDC3-204ENST00000559834 PXDNLA1KZ92 1463 aa12.45□□□□□ -0.42
HDDC3-204ENST00000559834 KIF3CO14782 793 aa12.44□□□□□ -0.42
HDDC3-204ENST00000559834 SLC52A2Q9HAB3 445 aa12.44□□□□□ -0.42
HDDC3-204ENST00000559834 ZNF831Q5JPB2 1677 aa12.44□□□□□ -0.42
HDDC3-204ENST00000559834 C10orf71Q711Q0 1435 aa12.44□□□□□ -0.42
HDDC3-204ENST00000559834 USP42Q9H9J4 1324 aaKnown RBP12.43□□□□□ -0.42
HDDC3-204ENST00000559834 TOMM70O94826 608 aa12.43□□□□□ -0.42
HDDC3-204ENST00000559834 DALRD3Q5D0E6 543 aaKnown RBP12.43□□□□□ -0.42
HDDC3-204ENST00000559834 AMER1Q5JTC6 1135 aaPredicted RBP12.43□□□□□ -0.42
HDDC3-204ENST00000559834 INTS5Q6P9B9 1019 aaKnown RBP12.43□□□□□ -0.42
HDDC3-204ENST00000559834 SRP68Q9UHB9 627 aaKnown RBP12.43□□□□□ -0.42
HDDC3-204ENST00000559834 CICQ96RK0 1608 aaPredicted RBP12.42□□□□□ -0.42
HDDC3-204ENST00000559834 RNMTO43148 476 aaKnown RBP12.42□□□□□ -0.42
HDDC3-204ENST00000559834 KCNA3P22001 575 aa12.42□□□□□ -0.42
HDDC3-204ENST00000559834 FKBP8Q14318 412 aa12.42□□□□□ -0.42
HDDC3-204ENST00000559834 DNAJC10Q8IXB1 793 aa12.42□□□□□ -0.42
HDDC3-204ENST00000559834 LGR6Q9HBX8 967 aa12.42□□□□□ -0.42
HDDC3-204ENST00000559834 DIAPH1O60610 1272 aaKnown RBP12.41□□□□□ -0.42
HDDC3-204ENST00000559834 HMOX1P09601 288 aa12.41□□□□□ -0.42
HDDC3-204ENST00000559834 TM4SF1P30408 202 aa12.41□□□□□ -0.42
HDDC3-204ENST00000559834 APLP1P51693 650 aa12.4□□□□□ -0.42
HDDC3-204ENST00000559834 IFFO2Q5TF58 517 aa12.4□□□□□ -0.42
HDDC3-204ENST00000559834 C9orf131Q5VYM1 1079 aa12.4□□□□□ -0.42
HDDC3-204ENST00000559834 USPL1Q5W0Q7 1092 aa12.4□□□□□ -0.42
HDDC3-204ENST00000559834 C16orf71Q8IYS4 520 aaPredicted RBP12.4□□□□□ -0.42
HDDC3-204ENST00000559834 MYH14Q7Z406 1995 aaKnown RBP12.39□□□□□ -0.43
HDDC3-204ENST00000559834 KIF13BQ9NQT8 1826 aa12.39□□□□□ -0.43
HDDC3-204ENST00000559834 POLRMTO00411 1230 aaKnown RBP12.39□□□□□ -0.43
HDDC3-204ENST00000559834 CYP19A1P11511 503 aaPredicted RBP12.39□□□□□ -0.43
HDDC3-204ENST00000559834 DDR1Q08345 913 aa12.39□□□□□ -0.43
HDDC3-204ENST00000559834 SLC39A6Q13433 755 aa12.39□□□□□ -0.43
HDDC3-204ENST00000559834 MTHFSDQ2M296 383 aaKnown RBP12.39□□□□□ -0.43
HDDC3-204ENST00000559834 VSIG10Q8N0Z9 540 aa12.39□□□□□ -0.43
HDDC3-204ENST00000559834 NARFQ9UHQ1 456 aa12.39□□□□□ -0.43
HDDC3-204ENST00000559834 C4AP0C0L4 1744 aa12.39□□□□□ -0.43
HDDC3-204ENST00000559834 SOS1Q07889 1333 aaPredicted RBP12.38□□□□□ -0.43
HDDC3-204ENST00000559834 KIF7Q2M1P5 1343 aa12.38□□□□□ -0.43
HDDC3-204ENST00000559834 COL5A3P25940 1745 aaPredicted RBP12.38□□□□□ -0.43
HDDC3-204ENST00000559834 GOLGB1Q14789 3259 aaKnown RBP12.38□□□□□ -0.43
HDDC3-204ENST00000559834 PER1O15534 1290 aaPredicted RBP12.38□□□□□ -0.43
HDDC3-204ENST00000559834 STARD3NLO95772 234 aa12.38□□□□□ -0.43
HDDC3-204ENST00000559834 CC2D1BQ5T0F9 858 aaKnown RBP12.38□□□□□ -0.43
HDDC3-204ENST00000559834 TTC5Q8N0Z6 440 aa12.38□□□□□ -0.43
HDDC3-204ENST00000559834 N4BP2Q86UW6 1770 aaPredicted RBP12.38□□□□□ -0.43
HDDC3-204ENST00000559834 KDM2BQ8NHM5 1336 aa12.37□□□□□ -0.43
HDDC3-204ENST00000559834 CHRNA5P30532 468 aa12.37□□□□□ -0.43
HDDC3-204ENST00000559834 NFIXQ14938 502 aa12.37□□□□□ -0.43
HDDC3-204ENST00000559834 RBM46Q8TBY0 533 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms