RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GSK3AP49840 483 aa10.72□□□□□ -0.69
VPS13C-208ENST00000559119 HRH3Q9Y5N1 445 aa10.72□□□□□ -0.69
VPS13C-208ENST00000559119 IGF1RP08069 1367 aa10.72□□□□□ -0.69
VPS13C-208ENST00000559119 SEMA3FQ13275 785 aa10.71□□□□□ -0.69
VPS13C-208ENST00000559119 FHDC1Q9C0D6 1143 aaPredicted RBP10.71□□□□□ -0.69
VPS13C-208ENST00000559119 GPAMQ9HCL2 828 aa10.71□□□□□ -0.69
VPS13C-208ENST00000559119 NSFL1CQ9UNZ2 370 aaKnown RBP10.71□□□□□ -0.69
VPS13C-208ENST00000559119 A0A1B0GTH6 734 aa10.7□□□□□ -0.7
VPS13C-208ENST00000559119 MX2P20592 715 aa10.7□□□□□ -0.7
VPS13C-208ENST00000559119 KCTD17Q8N5Z5 321 aa10.7□□□□□ -0.7
VPS13C-208ENST00000559119 SCARF2Q96GP6 870 aaPredicted RBP10.7□□□□□ -0.7
VPS13C-208ENST00000559119 IRS1P35568 1242 aa10.69□□□□□ -0.7
VPS13C-208ENST00000559119 MCM6Q14566 821 aa10.69□□□□□ -0.7
VPS13C-208ENST00000559119 ETNK1Q9HBU6 452 aa10.69□□□□□ -0.7
VPS13C-208ENST00000559119 CSB-PGBD3P0DP91 1061 aa10.68□□□□□ -0.7
VPS13C-208ENST00000559119 PRKCSHP14314 528 aaPredicted RBP10.68□□□□□ -0.7
VPS13C-208ENST00000559119 SOX11P35716 441 aa10.68□□□□□ -0.7
VPS13C-208ENST00000559119 TLR1Q15399 786 aa10.68□□□□□ -0.7
VPS13C-208ENST00000559119 MAP7D1Q3KQU3 841 aa10.68□□□□□ -0.7
VPS13C-208ENST00000559119 C4orf17Q53FE4 359 aa10.68□□□□□ -0.7
VPS13C-208ENST00000559119 PGBD3Q8N328 593 aa10.68□□□□□ -0.7
VPS13C-208ENST00000559119 CHIC2Q9UKJ5 165 aa10.68□□□□□ -0.7
VPS13C-208ENST00000559119 STAU1O95793 577 aaKnown RBP10.67□□□□□ -0.7
VPS13C-208ENST00000559119 RHBDD1Q8TEB9 315 aa10.67□□□□□ -0.7
VPS13C-208ENST00000559119 BCRP11274 1271 aa10.66□□□□□ -0.7
VPS13C-208ENST00000559119 PLPP7Q8NBV4 271 aa10.66□□□□□ -0.7
VPS13C-208ENST00000559119 PHF24Q9UPV7 400 aa10.66□□□□□ -0.7
VPS13C-208ENST00000559119 KANK3Q6NY19 840 aa10.65□□□□□ -0.7
VPS13C-208ENST00000559119 PPARGC1BQ86YN6 1023 aaKnown RBP10.65□□□□□ -0.7
VPS13C-208ENST00000559119 NEDD1Q8NHV4 660 aa10.65□□□□□ -0.7
VPS13C-208ENST00000559119 CFHR5Q9BXR6 569 aa10.65□□□□□ -0.7
VPS13C-208ENST00000559119 MSX1P28360 303 aa10.64□□□□□ -0.71
VPS13C-208ENST00000559119 LBRQ14739 615 aaKnown RBP10.64□□□□□ -0.71
VPS13C-208ENST00000559119 EFHC2Q5JST6 749 aa10.64□□□□□ -0.71
VPS13C-208ENST00000559119 ACDQ96AP0 544 aa10.64□□□□□ -0.71
VPS13C-208ENST00000559119 RUBCNLQ9H714 662 aa10.64□□□□□ -0.71
VPS13C-208ENST00000559119 INHAP05111 366 aa10.63□□□□□ -0.71
VPS13C-208ENST00000559119 MAP2K3P46734 347 aa10.63□□□□□ -0.71
VPS13C-208ENST00000559119 GDF10P55107 478 aa10.63□□□□□ -0.71
VPS13C-208ENST00000559119 WWC1Q8IX03 1113 aa10.63□□□□□ -0.71
VPS13C-208ENST00000559119 THBS1P07996 1170 aa10.62□□□□□ -0.71
VPS13C-208ENST00000559119 SCNN1DP51172 638 aa10.62□□□□□ -0.71
VPS13C-208ENST00000559119 PLA2G4AP47712 749 aa10.61□□□□□ -0.71
VPS13C-208ENST00000559119 TBC1D9Q6ZT07 1266 aa10.61□□□□□ -0.71
VPS13C-208ENST00000559119 COG6Q9Y2V7 657 aa10.61□□□□□ -0.71
VPS13C-208ENST00000559119 PHF20L1A8MW92 1017 aa10.6□□□□□ -0.71
VPS13C-208ENST00000559119 PODNQ7Z5L7 613 aa10.6□□□□□ -0.71
VPS13C-208ENST00000559119 LRRC4BQ9NT99 713 aa10.6□□□□□ -0.71
VPS13C-208ENST00000559119 DNMT3AQ9Y6K1 912 aaPredicted RBP10.6□□□□□ -0.71
VPS13C-208ENST00000559119 BEND7Q8N7W2 519 aaPredicted RBP10.59□□□□□ -0.71
VPS13C-208ENST00000559119 OXCT2Q9BYC2 517 aaPredicted RBP10.59□□□□□ -0.71
VPS13C-208ENST00000559119 CNTNAP5Q8WYK1 1306 aa10.58□□□□□ -0.71
VPS13C-208ENST00000559119 SMTNP53814 917 aa10.58□□□□□ -0.72
VPS13C-208ENST00000559119 NIFKQ9BYG3 293 aaKnown RBP10.58□□□□□ -0.72
VPS13C-208ENST00000559119 SERTAD1Q9UHV2 236 aa10.58□□□□□ -0.72
VPS13C-208ENST00000559119 ATXN7L1Q9ULK2 861 aaPredicted RBP10.58□□□□□ -0.72
VPS13C-208ENST00000559119 OIP5O43482 229 aa10.57□□□□□ -0.72
VPS13C-208ENST00000559119 SKIP12755 728 aa10.57□□□□□ -0.72
VPS13C-208ENST00000559119 UBAP2LQ14157 1087 aaKnown RBP10.57□□□□□ -0.72
VPS13C-208ENST00000559119 EML3Q32P44 896 aa10.57□□□□□ -0.72
VPS13C-208ENST00000559119 AIDAQ96BJ3 306 aa10.57□□□□□ -0.72
VPS13C-208ENST00000559119 CRISPLD1Q9H336 500 aa10.57□□□□□ -0.72
VPS13C-208ENST00000559119 PIK3CDO00329 1044 aa10.56□□□□□ -0.72
VPS13C-208ENST00000559119 RAD21O60216 631 aa10.56□□□□□ -0.72
VPS13C-208ENST00000559119 GPAT2Q6NUI2 795 aa10.56□□□□□ -0.72
VPS13C-208ENST00000559119 C1orf216Q8TAB5 229 aa10.56□□□□□ -0.72
VPS13C-208ENST00000559119 KLRG1Q96E93 195 aa10.56□□□□□ -0.72
VPS13C-208ENST00000559119 BMP4P12644 408 aa10.55□□□□□ -0.72
VPS13C-208ENST00000559119 FIGNL1Q6PIW4 674 aa10.55□□□□□ -0.72
VPS13C-208ENST00000559119 ABHD17AQ96GS6 310 aa10.55□□□□□ -0.72
VPS13C-208ENST00000559119 GDF2Q9UK05 429 aaPredicted RBP10.55□□□□□ -0.72
VPS13C-208ENST00000559119 NOD1Q9Y239 953 aa10.55□□□□□ -0.72
VPS13C-208ENST00000559119 TMEM229AB2RXF0 380 aa10.54□□□□□ -0.72
VPS13C-208ENST00000559119 FOXK2Q01167 660 aa10.54□□□□□ -0.72
VPS13C-208ENST00000559119 ALG2Q9H553 416 aa10.54□□□□□ -0.72
VPS13C-208ENST00000559119 A6NJY4 79 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 BNIP3LO60238 219 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 LZTS3O60299 673 aaPredicted RBP10.53□□□□□ -0.72
VPS13C-208ENST00000559119 FGFR3P22607 806 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 NBPF1Q3BBV0 1214 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 GALNT6Q8NCL4 622 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 POM121Q96HA1 1249 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 SLC4A9Q96Q91 983 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 PCDHGA11Q9Y5H2 935 aa10.53□□□□□ -0.72
VPS13C-208ENST00000559119 CDK2AP1O14519 115 aa10.52□□□□□ -0.73
VPS13C-208ENST00000559119 IGHA1P01876 353 aa10.52□□□□□ -0.73
VPS13C-208ENST00000559119 PSME1Q06323 249 aa10.52□□□□□ -0.73
VPS13C-208ENST00000559119 ARSJQ5FYB0 599 aaPredicted RBP10.52□□□□□ -0.73
VPS13C-208ENST00000559119 GOLGA6L1Q8N7Z2 621 aa10.52□□□□□ -0.73
VPS13C-208ENST00000559119 NFATC2IPQ8NCF5 419 aa10.52□□□□□ -0.73
VPS13C-208ENST00000559119 BACH1O14867 736 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 UBTFP17480 764 aaKnown RBP10.51□□□□□ -0.73
VPS13C-208ENST00000559119 ATP4AP20648 1035 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 GTF2IP78347 998 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 FLIIQ13045 1269 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 MTFR1Q15390 333 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 NLRP8Q86W28 1048 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 NDFIP2Q9NV92 336 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 CABP1Q9NZU7 370 aa10.51□□□□□ -0.73
VPS13C-208ENST00000559119 PCDHGC4Q9Y5F7 938 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms