RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 EPXP11678 715 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 AMPD1P23109 780 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 GATA4P43694 442 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 NBPF20Q3BBV1 942 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 GOLGA6L1Q8N7Z2 621 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 EPS8L1Q8TE68 723 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 GPAMQ9HCL2 828 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 TIMMDC1Q9NPL8 285 aa3.38□□□□□ -1.87
USP3-209ENST00000558925 SPATA31C2B4DYI2 1134 aa3.37□□□□□ -1.87
USP3-209ENST00000558925 CTBSQ01459 385 aa3.37□□□□□ -1.87
USP3-209ENST00000558925 PRSS36Q5K4E3 855 aa3.37□□□□□ -1.87
USP3-209ENST00000558925 ABHD17AQ96GS6 310 aa3.37□□□□□ -1.87
USP3-209ENST00000558925 NDFIP2Q9NV92 336 aa3.37□□□□□ -1.87
USP3-209ENST00000558925 KLF15Q9UIH9 416 aa3.37□□□□□ -1.87
USP3-209ENST00000558925 WASLO00401 505 aaPredicted RBP3.36□□□□□ -1.87
USP3-209ENST00000558925 TRIM66O15016 1216 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 BNIP3LO60238 219 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 SCTRP47872 440 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 PTK2Q05397 1052 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 SLC27A3Q5K4L6 730 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 C14orf37Q86TY3 774 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 RNF135Q8IUD6 432 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 AK7Q96M32 723 aa3.36□□□□□ -1.87
USP3-209ENST00000558925 NEURL1BA8MQ27 555 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 GIGYF1O75420 1035 aaPredicted RBP3.35□□□□□ -1.87
USP3-209ENST00000558925 BMP4P12644 408 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 PHKA2P46019 1235 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 PDE4DQ08499 809 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 CLN3Q13286 438 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 WDR44Q5JSH3 913 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 CHSY3Q70JA7 882 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 NBPF11Q86T75 865 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 PLVAPQ9BX97 442 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 KRTAP4-9Q9BYQ8 210 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 KDM4CQ9H3R0 1056 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 RUBCNLQ9H714 662 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 NOP53Q9NZM5 478 aaKnown RBP3.35□□□□□ -1.87
USP3-209ENST00000558925 GPSM3Q9Y4H4 160 aa3.35□□□□□ -1.87
USP3-209ENST00000558925 ZC3H4Q9UPT8 1303 aaKnown RBP3.35□□□□□ -1.87
USP3-209ENST00000558925 HYAL3O43820 417 aaPredicted RBP3.34□□□□□ -1.87
USP3-209ENST00000558925 FGFR3P22607 806 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 ERVK-9P63128 1117 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 PPP2R2DQ66LE6 453 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 TAS1R3Q7RTX0 852 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 FCHSD1Q86WN1 690 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 DZIP3Q86Y13 1208 aaKnown RBP3.34□□□□□ -1.87
USP3-209ENST00000558925 IL27Q8NEV9 243 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 KRTAP4-2Q9BYR5 136 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 ARHGEF10LQ9HCE6 1279 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 HMX1Q9NP08 348 aaPredicted RBP3.34□□□□□ -1.87
USP3-209ENST00000558925 RAB6BQ9NRW1 208 aa3.34□□□□□ -1.87
USP3-209ENST00000558925 ARAFP10398 606 aa3.33□□□□□ -1.88
USP3-209ENST00000558925 CLK2P49760 499 aaKnown RBP3.33□□□□□ -1.88
USP3-209ENST00000558925 LRP8Q14114 963 aa3.33□□□□□ -1.88
USP3-209ENST00000558925 SEPT12Q8IYM1 358 aa3.33□□□□□ -1.88
USP3-209ENST00000558925 NLRP3Q96P20 1036 aa3.33□□□□□ -1.88
USP3-209ENST00000558925 OSBPL3Q9H4L5 887 aa3.33□□□□□ -1.88
USP3-209ENST00000558925 POLR3EQ9NVU0 708 aa3.33□□□□□ -1.88
USP3-209ENST00000558925 ATXN7L1Q9ULK2 861 aaPredicted RBP3.33□□□□□ -1.88
USP3-209ENST00000558925 PHF24Q9UPV7 400 aa3.33□□□□□ -1.88
USP3-209ENST00000558925 FAM229AH3BQW9 127 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 PIK3R2O00459 728 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 TRAK2O60296 914 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 IL2RAP01589 272 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 SPATA31C1P0DKV0 1188 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 MSX1P28360 303 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 COL9A3Q14050 684 aaPredicted RBP3.32□□□□□ -1.88
USP3-209ENST00000558925 CC2D2BQ6DHV5 1058 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 FAM117AQ9C073 453 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 DNAAF2Q9NVR5 837 aaKnown RBP3.32□□□□□ -1.88
USP3-209ENST00000558925 HRH3Q9Y5N1 445 aa3.32□□□□□ -1.88
USP3-209ENST00000558925 A0A1B0GTH6 734 aa3.31□□□□□ -1.88
USP3-209ENST00000558925 SUPT5HO00267 1087 aaKnown RBP3.31□□□□□ -1.88
USP3-209ENST00000558925 C4orf17Q53FE4 359 aa3.31□□□□□ -1.88
USP3-209ENST00000558925 MCTP1Q6DN14 999 aa3.31□□□□□ -1.88
USP3-209ENST00000558925 FHDC1Q9C0D6 1143 aaPredicted RBP3.31□□□□□ -1.88
USP3-209ENST00000558925 CENPCQ03188 943 aa3.3□□□□□ -1.88
USP3-209ENST00000558925 LBRQ14739 615 aaKnown RBP3.3□□□□□ -1.88
USP3-209ENST00000558925 STAU1O95793 577 aaKnown RBP3.29□□□□□ -1.88
USP3-209ENST00000558925 PCBP4P57723 403 aaKnown RBP3.29□□□□□ -1.88
USP3-209ENST00000558925 CYP2U1Q7Z449 544 aa3.29□□□□□ -1.88
USP3-209ENST00000558925 CNKSR1Q969H4 720 aa3.29□□□□□ -1.88
USP3-209ENST00000558925 MDFIQ99750 246 aa3.29□□□□□ -1.88
USP3-209ENST00000558925 ESYT1Q9BSJ8 1104 aa3.29□□□□□ -1.88
USP3-209ENST00000558925 COBLO75128 1261 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 CD33P20138 364 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 ATP4AP20648 1035 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 ADH6P28332 368 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 GRIK4Q16099 956 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 C8orf86Q6ZUL3 223 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 PROCA1Q8NCQ7 364 aaPredicted RBP3.28□□□□□ -1.88
USP3-209ENST00000558925 TRIM34Q9BYJ4 488 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 ZCCHC2Q9C0B9 1178 aaKnown RBP3.28□□□□□ -1.88
USP3-209ENST00000558925 CRISPLD1Q9H336 500 aa3.28□□□□□ -1.88
USP3-209ENST00000558925 DCDC2BA2VCK2 349 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 AP1G2O75843 785 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 FBXO45P0C2W1 286 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 H2AFB1P0C5Y9 115 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 H2AFB2P0C5Z0 115 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 CSB-PGBD3P0DP91 1061 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms