RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 PDRG1Q9NUG6 133 aa16.31■□□□□ 0.2
SPG11-210ENST00000558319 AAMPQ13685 434 aa16.31■□□□□ 0.2
SPG11-210ENST00000558319 MAP3K11Q16584 847 aa16.31■□□□□ 0.2
SPG11-210ENST00000558319 GCC1Q96CN9 775 aa16.31■□□□□ 0.2
SPG11-210ENST00000558319 CASTP20810 708 aaKnown RBP16.3■□□□□ 0.2
SPG11-210ENST00000558319 HIP1O00291 1037 aa16.3■□□□□ 0.2
SPG11-210ENST00000558319 POLR3DP05423 398 aaPredicted RBP16.3■□□□□ 0.2
SPG11-210ENST00000558319 WASHC2AQ641Q2 1341 aa16.3■□□□□ 0.2
SPG11-210ENST00000558319 ISM2Q6H9L7 571 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 KIF18AQ8NI77 898 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 MYD88Q99836 296 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 LMAN1P49257 510 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 METTL24Q5JXM2 366 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 CEP63Q96MT8 703 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 SPG7Q9UQ90 795 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 SMTNL1A8MU46 457 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 KIF4BQ2VIQ3 1234 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 JAKMIP3Q5VZ66 844 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 CRACR2BQ8N4Y2 399 aaPredicted RBP16.29■□□□□ 0.2
SPG11-210ENST00000558319 SRCIN1Q9C0H9 1055 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 BOLA2Q9H3K6 86 aa16.29■□□□□ 0.2
SPG11-210ENST00000558319 GPTP24298 496 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 UBE2Q2Q8WVN8 375 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 RAPGEF3O95398 923 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 ANKRD1Q15327 319 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 TXLNBQ8N3L3 684 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 VAT1LQ9HCJ6 419 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 TERF1P54274 439 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 CCDC178Q5BJE1 867 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 SERPINA10Q9UK55 444 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 IFFO1Q0D2I5 559 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 CHD1LQ86WJ1 897 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.21e-6■■■■□ 25.3
SPG11-210ENST00000558319 CLIP2Q9UDT6 1046 aa16.28■□□□□ 0.2
SPG11-210ENST00000558319 ATP2C2O75185 946 aa16.27■□□□□ 0.2
SPG11-210ENST00000558319 CCDC83Q8IWF9 413 aa16.27■□□□□ 0.2
SPG11-210ENST00000558319 MMRN2Q9H8L6 949 aa16.27■□□□□ 0.2
SPG11-210ENST00000558319 USP25Q9UHP3 1055 aa16.27■□□□□ 0.2
SPG11-210ENST00000558319 GTF2A1P52655 376 aaPredicted RBP16.27■□□□□ 0.2
SPG11-210ENST00000558319 WAPLQ7Z5K2 1190 aa16.27■□□□□ 0.2
SPG11-210ENST00000558319 CCDC91Q7Z6B0 441 aa16.27■□□□□ 0.2
SPG11-210ENST00000558319 MACROD2A1Z1Q3 448 aa16.27■□□□□ 0.19
SPG11-210ENST00000558319 SPTY2D1Q68D10 685 aaPredicted RBP16.27■□□□□ 0.19
SPG11-210ENST00000558319 ERC1Q8IUD2 1116 aa16.27■□□□□ 0.19
SPG11-210ENST00000558319 AIDAQ96BJ3 306 aa16.27■□□□□ 0.19
SPG11-210ENST00000558319 GBP3Q9H0R5 595 aa16.27■□□□□ 0.19
SPG11-210ENST00000558319 FANCD2Q9BXW9 1451 aa16.27■□□□□ 0.19
SPG11-210ENST00000558319 SFPQP23246 707 aaKnown RBP eCLIP16.26■□□□□ 0.19
SPG11-210ENST00000558319 CCDC96Q2M329 555 aa16.26■□□□□ 0.19
SPG11-210ENST00000558319 CPLX3Q8WVH0 158 aa16.26■□□□□ 0.19
SPG11-210ENST00000558319 BBXQ8WY36 941 aaPredicted RBP16.26■□□□□ 0.19
SPG11-210ENST00000558319 KIF5CO60282 957 aa16.26■□□□□ 0.19
SPG11-210ENST00000558319 IGHMBP2P38935 993 aaKnown RBP16.26■□□□□ 0.19
SPG11-210ENST00000558319 CCDC8Q9H0W5 538 aaPredicted RBP16.26■□□□□ 0.19
SPG11-210ENST00000558319 FAM107BQ9H098 131 aa16.26■□□□□ 0.19
SPG11-210ENST00000558319 CADPSQ9ULU8 1353 aa16.26■□□□□ 0.19
SPG11-210ENST00000558319 F6X3S4 739 aa16.25■□□□□ 0.19
SPG11-210ENST00000558319 BLOC1S2Q6QNY1 142 aa16.25■□□□□ 0.19
SPG11-210ENST00000558319 MAP9Q49MG5 647 aa16.25■□□□□ 0.19
SPG11-210ENST00000558319 CTNNBL1Q8WYA6 563 aaPredicted RBP16.25■□□□□ 0.19
SPG11-210ENST00000558319 MNAT1P51948 309 aa16.25■□□□□ 0.19
SPG11-210ENST00000558319 RANBP6O60518 1105 aaKnown RBP16.25■□□□□ 0.19
SPG11-210ENST00000558319 CCDC184Q52MB2 194 aa16.25■□□□□ 0.19
SPG11-210ENST00000558319 MKNK2Q9HBH9 465 aa16.24■□□□□ 0.19
SPG11-210ENST00000558319 ZPR1O75312 459 aa16.24■□□□□ 0.19
SPG11-210ENST00000558319 BRD4O60885 1362 aaPredicted RBP16.24■□□□□ 0.19
SPG11-210ENST00000558319 CCT2P78371 535 aaKnown RBP16.23■□□□□ 0.19
SPG11-210ENST00000558319 SPA17Q15506 151 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 TSHZ3Q63HK5 1081 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 LUZP1Q86V48 1076 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 CKAP2LQ8IYA6 745 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 ZSWIM4Q9H7M6 989 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 CTR9Q6PD62 1173 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 ZNF397Q8NF99 534 aaPredicted RBP16.23■□□□□ 0.19
SPG11-210ENST00000558319 PANK2Q9BZ23 570 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 PRPF40BQ6NWY9 871 aaKnown RBP16.23■□□□□ 0.19
SPG11-210ENST00000558319 NOL7Q9UMY1 257 aaKnown RBP16.23■□□□□ 0.19
SPG11-210ENST00000558319 ZSCAN12O43309 604 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 CEP126Q9P2H0 1117 aa16.23■□□□□ 0.19
SPG11-210ENST00000558319 SMARCC1Q92922 1105 aaPredicted RBP16.23■□□□□ 0.19
SPG11-210ENST00000558319 SSFA2P28290 1259 aa16.22■□□□□ 0.19
SPG11-210ENST00000558319 MICALCLQ6ZW33 695 aa16.22■□□□□ 0.19
SPG11-210ENST00000558319 TOP1P11387 765 aaKnown RBP16.22■□□□□ 0.19
SPG11-210ENST00000558319 PDE3AQ14432 1141 aa16.22■□□□□ 0.19
SPG11-210ENST00000558319 CCDC183Q5T5S1 534 aa16.21■□□□□ 0.19
SPG11-210ENST00000558319 TIGD1Q96MW7 591 aa16.21■□□□□ 0.19
SPG11-210ENST00000558319 PUS7Q96PZ0 661 aaKnown RBP16.21■□□□□ 0.19
SPG11-210ENST00000558319 DNAAF4Q8WXU2 420 aa16.21■□□□□ 0.19
SPG11-210ENST00000558319 TMEM87AQ8NBN3 555 aa16.21■□□□□ 0.19
SPG11-210ENST00000558319 ZNF830Q96NB3 372 aaPredicted RBP16.21■□□□□ 0.19
SPG11-210ENST00000558319 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.21■□□□□ 0.19
SPG11-210ENST00000558319 RBM27Q9P2N5 1060 aaKnown RBP16.21■□□□□ 0.19
SPG11-210ENST00000558319 CIZ1Q9ULV3 898 aaPredicted RBP16.21■□□□□ 0.19
SPG11-210ENST00000558319 GSTTP1A0A1W2PQM5 241 aa16.21■□□□□ 0.19
SPG11-210ENST00000558319 TMEM57Q8N5G2 664 aa16.21■□□□□ 0.19
SPG11-210ENST00000558319 GDPD2Q9HCC8 539 aa16.21■□□□□ 0.19
SPG11-210ENST00000558319 DZIP1Q86YF9 867 aaKnown RBP16.2■□□□□ 0.18
SPG11-210ENST00000558319 F8W031 263 aaPredicted RBP16.2■□□□□ 0.18
SPG11-210ENST00000558319 SPECC1Q5M775 1068 aa16.2■□□□□ 0.18
SPG11-210ENST00000558319 CCT4P50991 539 aaKnown RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms