RNA–Protein interactions for RNA: ENST00000557422.1

RTN1-208, Transcript of reticulon 1, humanhuman

TSL 3

Gene RTN1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-208ENST00000557422 NMRK2Q9NPI5 230 aa17.03■□□□□ 0.32
RTN1-208ENST00000557422 KIAA1551Q9HCM1 1747 aa17.03■□□□□ 0.32
RTN1-208ENST00000557422 KIF20BQ96Q89 1820 aa17.03■□□□□ 0.32
RTN1-208ENST00000557422 TMF1P82094 1093 aa17.02■□□□□ 0.32
RTN1-208ENST00000557422 ATG3Q9NT62 314 aa17.02■□□□□ 0.32
RTN1-208ENST00000557422 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.02■□□□□ 0.32
RTN1-208ENST00000557422 TRAPPC3LQ5T215 181 aa17.01■□□□□ 0.31
RTN1-208ENST00000557422 NLGN1Q8N2Q7 840 aa17.01■□□□□ 0.31
RTN1-208ENST00000557422 PPM1GO15355 546 aaPredicted RBP17■□□□□ 0.31
RTN1-208ENST00000557422 PHKG2P15735 406 aa17■□□□□ 0.31
RTN1-208ENST00000557422 DPEP1P16444 411 aa17■□□□□ 0.31
RTN1-208ENST00000557422 C10orf71Q711Q0 1435 aa17■□□□□ 0.31
RTN1-208ENST00000557422 IFNL2Q8IZJ0 200 aa17■□□□□ 0.31
RTN1-208ENST00000557422 EYA1Q99502 592 aa17■□□□□ 0.31
RTN1-208ENST00000557422 CARD14Q9BXL6 1004 aa17■□□□□ 0.31
RTN1-208ENST00000557422 RTCBQ9Y3I0 505 aaKnown RBP17■□□□□ 0.31
RTN1-208ENST00000557422 FCHSD2O94868 740 aa16.99■□□□□ 0.31
RTN1-208ENST00000557422 WASHC2AQ641Q2 1341 aa16.98■□□□□ 0.31
RTN1-208ENST00000557422 RBM46Q8TBY0 533 aaKnown RBP16.98■□□□□ 0.31
RTN1-208ENST00000557422 ARHGEF1Q92888 912 aaKnown RBP16.98■□□□□ 0.31
RTN1-208ENST00000557422 SLC4A9Q96Q91 983 aa16.98■□□□□ 0.31
RTN1-208ENST00000557422 CCDC87Q9NVE4 849 aa16.98■□□□□ 0.31
RTN1-208ENST00000557422 RC3H1Q5TC82 1133 aaKnown RBP16.97■□□□□ 0.31
RTN1-208ENST00000557422 KDRP35968 1356 aa16.97■□□□□ 0.31
RTN1-208ENST00000557422 WDR90Q96KV7 1748 aa16.96■□□□□ 0.31
RTN1-208ENST00000557422 GYS1P13807 737 aa16.96■□□□□ 0.31
RTN1-208ENST00000557422 ADRA2BP18089 450 aa16.96■□□□□ 0.31
RTN1-208ENST00000557422 KCNA3P22001 575 aa16.96■□□□□ 0.31
RTN1-208ENST00000557422 C9orf131Q5VYM1 1079 aa16.96■□□□□ 0.31
RTN1-208ENST00000557422 HTRA3P83110 453 aa16.95■□□□□ 0.3
RTN1-208ENST00000557422 CDCA8Q53HL2 280 aa16.95■□□□□ 0.3
RTN1-208ENST00000557422 C16orf71Q8IYS4 520 aaPredicted RBP16.95■□□□□ 0.3
RTN1-208ENST00000557422 KLRG1Q96E93 195 aa16.95■□□□□ 0.3
RTN1-208ENST00000557422 RBM42Q9BTD8 480 aaKnown RBP16.95■□□□□ 0.3
RTN1-208ENST00000557422 PARP3Q9Y6F1 533 aa16.95■□□□□ 0.3
RTN1-208ENST00000557422 C4AP0C0L4 1744 aa16.95■□□□□ 0.3
RTN1-208ENST00000557422 ANKRD26Q9UPS8 1709 aa16.95■□□□□ 0.3
RTN1-208ENST00000557422 BRCA1P38398 1863 aaKnown RBP16.95■□□□□ 0.3
RTN1-208ENST00000557422 RPS6KA4O75676 772 aa16.94■□□□□ 0.3
RTN1-208ENST00000557422 RFC4P35249 363 aa16.94■□□□□ 0.3
RTN1-208ENST00000557422 FSTL1Q12841 308 aa16.94■□□□□ 0.3
RTN1-208ENST00000557422 COL13A1Q5TAT6 717 aaPredicted RBP16.94■□□□□ 0.3
RTN1-208ENST00000557422 JMYQ8N9B5 988 aa16.94■□□□□ 0.3
RTN1-208ENST00000557422 ERVV-2B6SEH9 535 aa16.93■□□□□ 0.3
RTN1-208ENST00000557422 ZNF831Q5JPB2 1677 aa16.93■□□□□ 0.3
RTN1-208ENST00000557422 CNTNAP4Q9C0A0 1308 aa16.93■□□□□ 0.3
RTN1-208ENST00000557422 PLEKHG2Q9H7P9 1386 aa16.92■□□□□ 0.3
RTN1-208ENST00000557422 DCAF5Q96JK2 942 aa16.92■□□□□ 0.3
RTN1-208ENST00000557422 PIM2Q9P1W9 311 aa16.92■□□□□ 0.3
RTN1-208ENST00000557422 POLKQ9UBT6 870 aa16.92■□□□□ 0.3
RTN1-208ENST00000557422 ARFGEF1Q9Y6D6 1849 aa16.91■□□□□ 0.3
RTN1-208ENST00000557422 KDM2BQ8NHM5 1336 aa16.91■□□□□ 0.3
RTN1-208ENST00000557422 COL5A3P25940 1745 aaPredicted RBP16.9■□□□□ 0.3
RTN1-208ENST00000557422 MYH14Q7Z406 1995 aaKnown RBP16.9■□□□□ 0.3
RTN1-208ENST00000557422 EIF4A2Q14240 407 aaKnown RBP16.9■□□□□ 0.3
RTN1-208ENST00000557422 DALRD3Q5D0E6 543 aaKnown RBP16.9■□□□□ 0.3
RTN1-208ENST00000557422 RRAGCQ9HB90 399 aa16.9■□□□□ 0.3
RTN1-208ENST00000557422 KCPQ6ZWJ8 1503 aa16.9■□□□□ 0.3
RTN1-208ENST00000557422 RNF181Q9P0P0 153 aa16.89■□□□□ 0.29
RTN1-208ENST00000557422 HSP90AB1P08238 724 aaKnown RBP16.88■□□□□ 0.29
RTN1-208ENST00000557422 SRP68Q9UHB9 627 aaKnown RBP16.88■□□□□ 0.29
RTN1-208ENST00000557422 DDR1Q08345 913 aa16.87■□□□□ 0.29
RTN1-208ENST00000557422 FKBP8Q14318 412 aa16.87■□□□□ 0.29
RTN1-208ENST00000557422 PTCD1O75127 700 aaKnown RBP16.86■□□□□ 0.29
RTN1-208ENST00000557422 CAPN15O75808 1086 aa16.86■□□□□ 0.29
RTN1-208ENST00000557422 CHRNA5P30532 468 aa16.86■□□□□ 0.29
RTN1-208ENST00000557422 CRKLP46109 303 aaKnown RBP16.86■□□□□ 0.29
RTN1-208ENST00000557422 CABP4P57796 275 aa16.86■□□□□ 0.29
RTN1-208ENST00000557422 SBF1O95248 1867 aa16.85■□□□□ 0.29
RTN1-208ENST00000557422 PLEKHO1Q53GL0 409 aaPredicted RBP16.85■□□□□ 0.29
RTN1-208ENST00000557422 TNS4Q8IZW8 715 aa16.85■□□□□ 0.29
RTN1-208ENST00000557422 USP42Q9H9J4 1324 aaKnown RBP16.85■□□□□ 0.29
RTN1-208ENST00000557422 KDM6AO15550 1401 aaPredicted RBP16.85■□□□□ 0.29
RTN1-208ENST00000557422 TNNT2P45379 298 aaPredicted RBP16.84■□□□□ 0.29
RTN1-208ENST00000557422 ZNF530Q6P9A1 599 aaPredicted RBP16.84■□□□□ 0.29
RTN1-208ENST00000557422 SMC1BQ8NDV3 1235 aa16.84■□□□□ 0.29
RTN1-208ENST00000557422 TM4SF1P30408 202 aa16.83■□□□□ 0.28
RTN1-208ENST00000557422 TNRC6CQ9HCJ0 1690 aaKnown RBP16.83■□□□□ 0.28
RTN1-208ENST00000557422 POLRMTO00411 1230 aaKnown RBP16.82■□□□□ 0.28
RTN1-208ENST00000557422 MTHFSP49914 203 aa16.82■□□□□ 0.28
RTN1-208ENST00000557422 PRELPP51888 382 aa16.82■□□□□ 0.28
RTN1-208ENST00000557422 AMOTQ4VCS5 1084 aa16.82■□□□□ 0.28
RTN1-208ENST00000557422 NFATC2IPQ8NCF5 419 aa16.82■□□□□ 0.28
RTN1-208ENST00000557422 PCNTO95613 3336 aa16.81■□□□□ 0.28
RTN1-208ENST00000557422 INTS5Q6P9B9 1019 aaKnown RBP16.81■□□□□ 0.28
RTN1-208ENST00000557422 ZC3H4Q9UPT8 1303 aaKnown RBP16.8■□□□□ 0.28
RTN1-208ENST00000557422 RASSF7Q02833 373 aa16.8■□□□□ 0.28
RTN1-208ENST00000557422 VEGFAP15692 232 aaPredicted RBP16.79■□□□□ 0.28
RTN1-208ENST00000557422 C1orf141Q5JVX7 400 aa16.79■□□□□ 0.28
RTN1-208ENST00000557422 TJP1Q07157 1748 aa16.79■□□□□ 0.28
RTN1-208ENST00000557422 ADAMTS7Q9UKP4 1686 aa16.78■□□□□ 0.28
RTN1-208ENST00000557422 GLTPD2A6NH11 291 aa16.77■□□□□ 0.28
RTN1-208ENST00000557422 ZPR1O75312 459 aa16.77■□□□□ 0.28
RTN1-208ENST00000557422 LMNB1P20700 586 aa16.77■□□□□ 0.28
RTN1-208ENST00000557422 USPL1Q5W0Q7 1092 aa16.77■□□□□ 0.28
RTN1-208ENST00000557422 AEBP1Q8IUX7 1158 aa16.77■□□□□ 0.28
RTN1-208ENST00000557422 HSPA1AP0DMV8 641 aaKnown RBP16.76■□□□□ 0.27
RTN1-208ENST00000557422 HSPA1BP0DMV9 641 aaKnown RBP16.76■□□□□ 0.27
RTN1-208ENST00000557422 SOS1Q07889 1333 aaPredicted RBP16.75■□□□□ 0.27
RTN1-208ENST00000557422 NFIXQ14938 502 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms