RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 WWC1Q8IX03 1113 aa9.57□□□□□ -0.88
VRK1-207ENST00000557352 UBTFP17480 764 aaKnown RBP9.56□□□□□ -0.88
VRK1-207ENST00000557352 H7C1W4 665 aa9.55□□□□□ -0.88
VRK1-207ENST00000557352 PHKA2P46019 1235 aa9.55□□□□□ -0.88
VRK1-207ENST00000557352 SCNN1DP51172 638 aa9.55□□□□□ -0.88
VRK1-207ENST00000557352 RASSF7Q02833 373 aa9.55□□□□□ -0.88
VRK1-207ENST00000557352 GTPBP3Q969Y2 492 aaKnown RBP9.55□□□□□ -0.88
VRK1-207ENST00000557352 F11P03951 625 aa9.54□□□□□ -0.88
VRK1-207ENST00000557352 GNASQ5JWF2 1037 aa9.54□□□□□ -0.88
VRK1-207ENST00000557352 TMEM214Q6NUQ4 689 aaKnown RBP9.54□□□□□ -0.88
VRK1-207ENST00000557352 MBIPQ9NS73 344 aa9.54□□□□□ -0.88
VRK1-207ENST00000557352 INHAP05111 366 aa9.53□□□□□ -0.88
VRK1-207ENST00000557352 CELA2BP08218 269 aaPredicted RBP9.53□□□□□ -0.88
VRK1-207ENST00000557352 GTF2E1P29083 439 aaPredicted RBP9.53□□□□□ -0.88
VRK1-207ENST00000557352 GDF10P55107 478 aa9.53□□□□□ -0.88
VRK1-207ENST00000557352 TLR1Q15399 786 aa9.53□□□□□ -0.88
VRK1-207ENST00000557352 C4orf17Q53FE4 359 aa9.53□□□□□ -0.88
VRK1-207ENST00000557352 FOXR1Q6PIV2 292 aa9.53□□□□□ -0.88
VRK1-207ENST00000557352 TMEM151AQ8N4L1 468 aa9.53□□□□□ -0.88
VRK1-207ENST00000557352 KCTD17Q8N5Z5 321 aa9.53□□□□□ -0.88
VRK1-207ENST00000557352 POM121CA8CG34 1229 aa9.52□□□□□ -0.89
VRK1-207ENST00000557352 RNF225M0QZC1 329 aaPredicted RBP9.52□□□□□ -0.89
VRK1-207ENST00000557352 GDF11O95390 407 aa9.52□□□□□ -0.89
VRK1-207ENST00000557352 THBS1P07996 1170 aa9.52□□□□□ -0.89
VRK1-207ENST00000557352 SKIP12755 728 aa9.52□□□□□ -0.89
VRK1-207ENST00000557352 PPARGC1BQ86YN6 1023 aaKnown RBP9.52□□□□□ -0.89
VRK1-207ENST00000557352 IGF1RP08069 1367 aa9.51□□□□□ -0.89
VRK1-207ENST00000557352 NFATC2IPQ8NCF5 419 aa9.51□□□□□ -0.89
VRK1-207ENST00000557352 RHBDD1Q8TEB9 315 aa9.51□□□□□ -0.89
VRK1-207ENST00000557352 NUCKS1Q9H1E3 243 aaKnown RBP9.51□□□□□ -0.89
VRK1-207ENST00000557352 A0A1B0GTH6 734 aa9.5□□□□□ -0.89
VRK1-207ENST00000557352 EML3Q32P44 896 aa9.5□□□□□ -0.89
VRK1-207ENST00000557352 ADAMTS19Q8TE59 1207 aa9.5□□□□□ -0.89
VRK1-207ENST00000557352 GPAMQ9HCL2 828 aa9.5□□□□□ -0.89
VRK1-207ENST00000557352 PCDHGA11Q9Y5H2 935 aa9.5□□□□□ -0.89
VRK1-207ENST00000557352 TMEM229AB2RXF0 380 aa9.49□□□□□ -0.89
VRK1-207ENST00000557352 LZTS3O60299 673 aaPredicted RBP9.48□□□□□ -0.89
VRK1-207ENST00000557352 IRS1P35568 1242 aa9.48□□□□□ -0.89
VRK1-207ENST00000557352 SMTNP53814 917 aa9.48□□□□□ -0.89
VRK1-207ENST00000557352 MARSP56192 900 aaKnown RBP9.48□□□□□ -0.89
VRK1-207ENST00000557352 MAP3K10Q02779 954 aa9.48□□□□□ -0.89
VRK1-207ENST00000557352 TRERF1Q96PN7 1200 aa9.48□□□□□ -0.89
VRK1-207ENST00000557352 NOD1Q9Y239 953 aa9.48□□□□□ -0.89
VRK1-207ENST00000557352 MSX1P28360 303 aa9.47□□□□□ -0.89
VRK1-207ENST00000557352 NCOA4Q13772 614 aa9.47□□□□□ -0.89
VRK1-207ENST00000557352 ACDQ96AP0 544 aa9.47□□□□□ -0.89
VRK1-207ENST00000557352 SERTAD1Q9UHV2 236 aa9.47□□□□□ -0.89
VRK1-207ENST00000557352 UBAP2LQ14157 1087 aaKnown RBP9.46□□□□□ -0.9
VRK1-207ENST00000557352 HDGFL1Q5TGJ6 251 aa9.46□□□□□ -0.9
VRK1-207ENST00000557352 DEPDC4Q8N2C3 294 aa9.46□□□□□ -0.9
VRK1-207ENST00000557352 SLC4A9Q96Q91 983 aa9.46□□□□□ -0.9
VRK1-207ENST00000557352 RUBCNLQ9H714 662 aa9.46□□□□□ -0.9
VRK1-207ENST00000557352 USP17L5A8MUK1 530 aa9.45□□□□□ -0.9
VRK1-207ENST00000557352 BCRP11274 1271 aa9.45□□□□□ -0.9
VRK1-207ENST00000557352 MX2P20592 715 aa9.45□□□□□ -0.9
VRK1-207ENST00000557352 PLA2G4AP47712 749 aa9.45□□□□□ -0.9
VRK1-207ENST00000557352 GTF2IP78347 998 aa9.45□□□□□ -0.9
VRK1-207ENST00000557352 CLUAP1Q96AJ1 413 aa9.45□□□□□ -0.9
VRK1-207ENST00000557352 SCARF2Q96GP6 870 aaPredicted RBP9.45□□□□□ -0.9
VRK1-207ENST00000557352 CFHR5Q9BXR6 569 aa9.45□□□□□ -0.9
VRK1-207ENST00000557352 A6NJY4 79 aa9.44□□□□□ -0.9
VRK1-207ENST00000557352 CSB-PGBD3P0DP91 1061 aa9.44□□□□□ -0.9
VRK1-207ENST00000557352 LBRQ14739 615 aaKnown RBP9.44□□□□□ -0.9
VRK1-207ENST00000557352 MTFR1Q15390 333 aa9.44□□□□□ -0.9
VRK1-207ENST00000557352 PGBD3Q8N328 593 aa9.44□□□□□ -0.9
VRK1-207ENST00000557352 UCN2Q96RP3 112 aa9.44□□□□□ -0.9
VRK1-207ENST00000557352 NIFKQ9BYG3 293 aaKnown RBP9.44□□□□□ -0.9
VRK1-207ENST00000557352 ENAMQ9NRM1 1142 aa9.44□□□□□ -0.9
VRK1-207ENST00000557352 KANK3Q6NY19 840 aa9.43□□□□□ -0.9
VRK1-207ENST00000557352 ZNF295-AS1Q8N0V1 137 aa9.43□□□□□ -0.9
VRK1-207ENST00000557352 FNBP4Q8N3X1 1017 aaPredicted RBP9.43□□□□□ -0.9
VRK1-207ENST00000557352 IQSEC3Q9UPP2 1182 aaPredicted RBP9.43□□□□□ -0.9
VRK1-207ENST00000557352 CDK2AP1O14519 115 aa9.42□□□□□ -0.9
VRK1-207ENST00000557352 TBC1D9Q6ZT07 1266 aa9.42□□□□□ -0.9
VRK1-207ENST00000557352 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.42□□□□□ -0.9
VRK1-207ENST00000557352 CRISPLD1Q9H336 500 aa9.42□□□□□ -0.9
VRK1-207ENST00000557352 USP3Q9Y6I4 520 aa9.42□□□□□ -0.9
VRK1-207ENST00000557352 CNTNAP5Q8WYK1 1306 aa9.41□□□□□ -0.9
VRK1-207ENST00000557352 PSME1Q06323 249 aa9.41□□□□□ -0.9
VRK1-207ENST00000557352 EFHC2Q5JST6 749 aa9.41□□□□□ -0.9
VRK1-207ENST00000557352 PROSER2Q86WR7 435 aaPredicted RBP9.41□□□□□ -0.9
VRK1-207ENST00000557352 PLEKHM2Q8IWE5 1019 aa9.41□□□□□ -0.9
VRK1-207ENST00000557352 LRRC4BQ9NT99 713 aa9.41□□□□□ -0.9
VRK1-207ENST00000557352 ZNF358Q9NW07 568 aa9.41□□□□□ -0.9
VRK1-207ENST00000557352 DNMT3AQ9Y6K1 912 aaPredicted RBP9.41□□□□□ -0.9
VRK1-207ENST00000557352 USP17L3A6NCW0 530 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 USP17L4A6NCW7 530 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 BACH1O14867 736 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 ATP4AP20648 1035 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 USP17L2Q6R6M4 530 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 USP17L1Q7RTZ2 530 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 C1orf216Q8TAB5 229 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 AIDAQ96BJ3 306 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 NSFL1CQ9UNZ2 370 aaKnown RBP9.4□□□□□ -0.9
VRK1-207ENST00000557352 PHF24Q9UPV7 400 aa9.4□□□□□ -0.9
VRK1-207ENST00000557352 ATP9BO43861 1147 aa9.39□□□□□ -0.91
VRK1-207ENST00000557352 TRIM50Q86XT4 487 aa9.39□□□□□ -0.91
VRK1-207ENST00000557352 OIP5O43482 229 aa9.38□□□□□ -0.91
VRK1-207ENST00000557352 MAP2K3P46734 347 aa9.38□□□□□ -0.91
VRK1-207ENST00000557352 NEDD1Q8NHV4 660 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms