RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, human

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-215	ENST00000555259	HSP90AB2P	Q58FF8	381 aa		13.62	□□□□□ -0.23
SCFD1-215	ENST00000555259	PLEKHG2	Q9H7P9	1386 aa		13.62	□□□□□ -0.23
SCFD1-215	ENST00000555259	FCHSD2	O94868	740 aa		13.62	□□□□□ -0.23
SCFD1-215	ENST00000555259	DPEP1	P16444	411 aa		13.62	□□□□□ -0.23
SCFD1-215	ENST00000555259	C9orf131	Q5VYM1	1079 aa		13.62	□□□□□ -0.23
SCFD1-215	ENST00000555259	NKX1-1	Q15270	411 aa	Predicted RBP	13.61	□□□□□ -0.23
SCFD1-215	ENST00000555259	PKD1L3	Q7Z443	1732 aa		13.61	□□□□□ -0.23
SCFD1-215	ENST00000555259	ATP6V1A	P38606	617 aa		13.6	□□□□□ -0.23
SCFD1-215	ENST00000555259	NLGN1	Q8N2Q7	840 aa		13.6	□□□□□ -0.23
SCFD1-215	ENST00000555259	GGNBP2	Q9H3C7	697 aa		13.6	□□□□□ -0.23
SCFD1-215	ENST00000555259	ASAP1	Q9ULH1	1129 aa		13.6	□□□□□ -0.23
SCFD1-215	ENST00000555259	KCP	Q6ZWJ8	1503 aa		13.6	□□□□□ -0.23
SCFD1-215	ENST00000555259	BRCA1	P38398	1863 aa	Known RBP	13.6	□□□□□ -0.23
SCFD1-215	ENST00000555259	FLT4	P35916	1363 aa		13.59	□□□□□ -0.23
SCFD1-215	ENST00000555259	KDM2B	Q8NHM5	1336 aa		13.59	□□□□□ -0.23
SCFD1-215	ENST00000555259	FYB1	O15117	783 aa		13.59	□□□□□ -0.23
SCFD1-215	ENST00000555259	TMF1	P82094	1093 aa		13.59	□□□□□ -0.23
SCFD1-215	ENST00000555259	CCDC87	Q9NVE4	849 aa		13.59	□□□□□ -0.23
SCFD1-215	ENST00000555259	TMOD3	Q9NYL9	352 aa		13.59	□□□□□ -0.23
SCFD1-215	ENST00000555259	KIF24	Q5T7B8	1368 aa		13.58	□□□□□ -0.24
SCFD1-215	ENST00000555259	C4A	P0C0L4	1744 aa		13.58	□□□□□ -0.24
SCFD1-215	ENST00000555259	KCNA3	P22001	575 aa		13.58	□□□□□ -0.24
SCFD1-215	ENST00000555259	TRAPPC3L	Q5T215	181 aa		13.58	□□□□□ -0.24
SCFD1-215	ENST00000555259	TESK2	Q96S53	571 aa		13.58	□□□□□ -0.24
SCFD1-215	ENST00000555259	RRAGC	Q9HB90	399 aa		13.58	□□□□□ -0.24
SCFD1-215	ENST00000555259	RTCB	Q9Y3I0	505 aa	Known RBP	13.58	□□□□□ -0.24
SCFD1-215	ENST00000555259	ARFGEF1	Q9Y6D6	1849 aa		13.57	□□□□□ -0.24
SCFD1-215	ENST00000555259	SPG7	Q9UQ90	795 aa		13.57	□□□□□ -0.24
SCFD1-215	ENST00000555259	NCAPD2	Q15021	1401 aa		13.57	□□□□□ -0.24
SCFD1-215	ENST00000555259	GYS1	P13807	737 aa		13.56	□□□□□ -0.24
SCFD1-215	ENST00000555259	SMC1B	Q8NDV3	1235 aa		13.56	□□□□□ -0.24
SCFD1-215	ENST00000555259	ARHGEF1	Q92888	912 aa	Known RBP	13.56	□□□□□ -0.24
SCFD1-215	ENST00000555259	DCAF5	Q96JK2	942 aa		13.56	□□□□□ -0.24
SCFD1-215	ENST00000555259	ATG3	Q9NT62	314 aa		13.56	□□□□□ -0.24
SCFD1-215	ENST00000555259	RNF181	Q9P0P0	153 aa		13.56	□□□□□ -0.24
SCFD1-215	ENST00000555259	HSPA1A	P0DMV8	641 aa	Known RBP	13.55	□□□□□ -0.24
SCFD1-215	ENST00000555259	HSPA1B	P0DMV9	641 aa	Known RBP	13.55	□□□□□ -0.24
SCFD1-215	ENST00000555259	ADRA2B	P18089	450 aa		13.55	□□□□□ -0.24
SCFD1-215	ENST00000555259	PIM2	Q9P1W9	311 aa		13.55	□□□□□ -0.24
SCFD1-215	ENST00000555259	PARP3	Q9Y6F1	533 aa		13.55	□□□□□ -0.24
SCFD1-215	ENST00000555259	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.55	□□□□□ -0.24
SCFD1-215	ENST00000555259	KDR	P35968	1356 aa		13.55	□□□□□ -0.24
SCFD1-215	ENST00000555259	ST20-MTHFS	A0A0A6YYL1	179 aa		13.54	□□□□□ -0.24
SCFD1-215	ENST00000555259	RFC4	P35249	363 aa		13.54	□□□□□ -0.24
SCFD1-215	ENST00000555259	DALRD3	Q5D0E6	543 aa	Known RBP	13.54	□□□□□ -0.24
SCFD1-215	ENST00000555259	SLC4A9	Q96Q91	983 aa		13.54	□□□□□ -0.24
SCFD1-215	ENST00000555259	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.54	□□□□□ -0.24	1e-10	■■■□□ 14.8
SCFD1-215	ENST00000555259	PHKG2	P15735	406 aa		13.53	□□□□□ -0.24
SCFD1-215	ENST00000555259	EMILIN1	Q9Y6C2	1016 aa		13.53	□□□□□ -0.24
SCFD1-215	ENST00000555259	RC3H1	Q5TC82	1133 aa	Known RBP	13.52	□□□□□ -0.25
SCFD1-215	ENST00000555259	IFNL2	Q8IZJ0	200 aa		13.52	□□□□□ -0.25
SCFD1-215	ENST00000555259	CNTNAP4	Q9C0A0	1308 aa		13.52	□□□□□ -0.25
SCFD1-215	ENST00000555259	TONSL	Q96HA7	1378 aa		13.51	□□□□□ -0.25
SCFD1-215	ENST00000555259	SLC24A1	O60721	1099 aa		13.51	□□□□□ -0.25
SCFD1-215	ENST00000555259	RPS6KA4	O75676	772 aa		13.51	□□□□□ -0.25
SCFD1-215	ENST00000555259	ZNF831	Q5JPB2	1677 aa		13.51	□□□□□ -0.25
SCFD1-215	ENST00000555259	SBF1	O95248	1867 aa		13.5	□□□□□ -0.25
SCFD1-215	ENST00000555259	RBM42	Q9BTD8	480 aa	Known RBP	13.5	□□□□□ -0.25
SCFD1-215	ENST00000555259	KIF20B	Q96Q89	1820 aa		13.5	□□□□□ -0.25
SCFD1-215	ENST00000555259	COL5A3	P25940	1745 aa	Predicted RBP	13.5	□□□□□ -0.25
SCFD1-215	ENST00000555259	CHRNA5	P30532	468 aa		13.49	□□□□□ -0.25
SCFD1-215	ENST00000555259	EYA1	Q99502	592 aa		13.49	□□□□□ -0.25
SCFD1-215	ENST00000555259	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.49	□□□□□ -0.25
SCFD1-215	ENST00000555259	PPM1G	O15355	546 aa	Predicted RBP	13.49	□□□□□ -0.25
SCFD1-215	ENST00000555259	DDR1	Q08345	913 aa		13.49	□□□□□ -0.25
SCFD1-215	ENST00000555259	KDM6A	O15550	1401 aa	Predicted RBP	13.48	□□□□□ -0.25
SCFD1-215	ENST00000555259	VEGFA	P15692	232 aa	Predicted RBP	13.48	□□□□□ -0.25
SCFD1-215	ENST00000555259	FKBP8	Q14318	412 aa		13.48	□□□□□ -0.25
SCFD1-215	ENST00000555259	MYH14	Q7Z406	1995 aa	Known RBP	13.47	□□□□□ -0.25
SCFD1-215	ENST00000555259	GLTPD2	A6NH11	291 aa		13.47	□□□□□ -0.25
SCFD1-215	ENST00000555259	RASSF7	Q02833	373 aa		13.47	□□□□□ -0.25
SCFD1-215	ENST00000555259	SRP68	Q9UHB9	627 aa	Known RBP	13.47	□□□□□ -0.25
SCFD1-215	ENST00000555259	WASHC2A	Q641Q2	1341 aa		13.47	□□□□□ -0.25
SCFD1-215	ENST00000555259	ANKRD26	Q9UPS8	1709 aa		13.46	□□□□□ -0.25
SCFD1-215	ENST00000555259	ERVV-2	B6SEH9	535 aa		13.46	□□□□□ -0.25
SCFD1-215	ENST00000555259	USP42	Q9H9J4	1324 aa	Known RBP	13.46	□□□□□ -0.25
SCFD1-215	ENST00000555259	SLC34A2	O95436	690 aa		13.45	□□□□□ -0.26
SCFD1-215	ENST00000555259	LMNB1	P20700	586 aa		13.45	□□□□□ -0.26
SCFD1-215	ENST00000555259	POLRMT	O00411	1230 aa	Known RBP	13.44	□□□□□ -0.26
SCFD1-215	ENST00000555259	CRKL	P46109	303 aa	Known RBP	13.44	□□□□□ -0.26
SCFD1-215	ENST00000555259	CARD14	Q9BXL6	1004 aa		13.44	□□□□□ -0.26
SCFD1-215	ENST00000555259	PTCD1	O75127	700 aa	Known RBP	13.42	□□□□□ -0.26
SCFD1-215	ENST00000555259	HSP90AB1	P08238	724 aa	Known RBP	13.42	□□□□□ -0.26
SCFD1-215	ENST00000555259	TM4SF1	P30408	202 aa		13.42	□□□□□ -0.26
SCFD1-215	ENST00000555259	POTEC	B2RU33	542 aa		13.41	□□□□□ -0.26
SCFD1-215	ENST00000555259	CABP4	P57796	275 aa		13.41	□□□□□ -0.26
SCFD1-215	ENST00000555259	EIF4A2	Q14240	407 aa	Known RBP	13.41	□□□□□ -0.26
SCFD1-215	ENST00000555259	CREBZF	Q9NS37	354 aa		13.41	□□□□□ -0.26
SCFD1-215	ENST00000555259	POLK	Q9UBT6	870 aa		13.41	□□□□□ -0.26
SCFD1-215	ENST00000555259	MKRN1	Q9UHC7	482 aa	Known RBP	13.41	□□□□□ -0.26
SCFD1-215	ENST00000555259	TIAM2	Q8IVF5	1701 aa		13.4	□□□□□ -0.26
SCFD1-215	ENST00000555259	ADAMTS7	Q9UKP4	1686 aa		13.4	□□□□□ -0.26
SCFD1-215	ENST00000555259	NFKBIE	O00221	500 aa		13.39	□□□□□ -0.27
SCFD1-215	ENST00000555259	FOXN1	O15353	648 aa		13.39	□□□□□ -0.27
SCFD1-215	ENST00000555259	INTS5	Q6P9B9	1019 aa	Known RBP	13.39	□□□□□ -0.27
SCFD1-215	ENST00000555259	TJP1	Q07157	1748 aa		13.38	□□□□□ -0.27
SCFD1-215	ENST00000555259	ZPR1	O75312	459 aa		13.38	□□□□□ -0.27
SCFD1-215	ENST00000555259	CDCA8	Q53HL2	280 aa		13.38	□□□□□ -0.27
SCFD1-215	ENST00000555259	USPL1	Q5W0Q7	1092 aa		13.38	□□□□□ -0.27
SCFD1-215	ENST00000555259	TTLL6	Q8N841	843 aa		13.38	□□□□□ -0.27

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