RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 TCERG1O14776 1098 aaKnown RBP11.38□□□□□ -0.59
TDP1-210ENST00000554976 RNMTO43148 476 aaKnown RBP11.38□□□□□ -0.59
TDP1-210ENST00000554976 PLEKHO1Q53GL0 409 aaPredicted RBP11.38□□□□□ -0.59
TDP1-210ENST00000554976 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.37□□□□□ -0.59
TDP1-210ENST00000554976 ITGB4P16144 1822 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 TUBGCP6Q96RT7 1819 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 ATP10DQ9P241 1426 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 LRP6O75581 1613 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 PTPRCP08575 1304 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 WDR17Q8IZU2 1322 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 ZBTB7CA1YPR0 619 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 HDAC1Q13547 482 aaPredicted RBP11.37□□□□□ -0.59
TDP1-210ENST00000554976 DISP2A7MBM2 1401 aa11.37□□□□□ -0.59
TDP1-210ENST00000554976 INTS3Q68E01 1043 aaKnown RBP11.36□□□□□ -0.59
TDP1-210ENST00000554976 EIF4A1P60842 406 aaKnown RBP11.36□□□□□ -0.59
TDP1-210ENST00000554976 CHRNA2Q15822 529 aa11.36□□□□□ -0.59
TDP1-210ENST00000554976 FTSJ3Q8IY81 847 aaKnown RBP11.36□□□□□ -0.59
TDP1-210ENST00000554976 NUP188Q5SRE5 1749 aa11.36□□□□□ -0.59
TDP1-210ENST00000554976 ZNF530Q6P9A1 599 aaPredicted RBP11.35□□□□□ -0.59
TDP1-210ENST00000554976 KCPQ6ZWJ8 1503 aa11.35□□□□□ -0.59
TDP1-210ENST00000554976 PHKG2P15735 406 aa11.35□□□□□ -0.59
TDP1-210ENST00000554976 HAP1P54257 671 aaPredicted RBP11.35□□□□□ -0.59
TDP1-210ENST00000554976 HOXB7P09629 217 aa11.34□□□□□ -0.59
TDP1-210ENST00000554976 ITPRIPQ8IWB1 547 aa11.34□□□□□ -0.59
TDP1-210ENST00000554976 API5Q9BZZ5 524 aaKnown RBP11.34□□□□□ -0.59
TDP1-210ENST00000554976 ARFGEF2Q9Y6D5 1785 aa11.34□□□□□ -0.59
TDP1-210ENST00000554976 G2E3Q7L622 706 aa11.33□□□□□ -0.6
TDP1-210ENST00000554976 CICQ96RK0 1608 aaPredicted RBP11.33□□□□□ -0.6
TDP1-210ENST00000554976 KCNQ3O43525 872 aa11.33□□□□□ -0.6
TDP1-210ENST00000554976 MPRIPQ6WCQ1 1025 aa11.33□□□□□ -0.6
TDP1-210ENST00000554976 CYP27B1O15528 508 aa11.32□□□□□ -0.6
TDP1-210ENST00000554976 PLEKHG5O94827 1062 aa11.32□□□□□ -0.6
TDP1-210ENST00000554976 SIRT2Q8IXJ6 389 aa11.32□□□□□ -0.6
TDP1-210ENST00000554976 SMC5Q8IY18 1101 aa11.32□□□□□ -0.6
TDP1-210ENST00000554976 TNS2Q63HR2 1409 aa11.31□□□□□ -0.6
TDP1-210ENST00000554976 BACH2Q9BYV9 841 aa11.31□□□□□ -0.6
TDP1-210ENST00000554976 CARD10Q9BWT7 1032 aa11.31□□□□□ -0.6
TDP1-210ENST00000554976 NLRP2Q9NX02 1062 aa11.31□□□□□ -0.6
TDP1-210ENST00000554976 SLC4A2P04920 1241 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 TATP17735 454 aaPredicted RBP11.3□□□□□ -0.6
TDP1-210ENST00000554976 C8orf34Q49A92 452 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 DOT1LQ8TEK3 1739 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 C1orf141Q5JVX7 400 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 SLC52A2Q9HAB3 445 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 BTBD11A6QL63 1104 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 NKX1-1Q15270 411 aaPredicted RBP11.3□□□□□ -0.6
TDP1-210ENST00000554976 CCDC30Q5VVM6 783 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 RWDD1Q9H446 243 aaPredicted RBP11.3□□□□□ -0.6
TDP1-210ENST00000554976 SPG7Q9UQ90 795 aa11.3□□□□□ -0.6
TDP1-210ENST00000554976 IBTKQ9P2D0 1353 aaPredicted RBP11.3□□□□□ -0.6
TDP1-210ENST00000554976 TJP1Q07157 1748 aa11.29□□□□□ -0.6
TDP1-210ENST00000554976 RAPGEF4Q8WZA2 1011 aa11.29□□□□□ -0.6
TDP1-210ENST00000554976 PDE4AP27815 886 aa11.29□□□□□ -0.6
TDP1-210ENST00000554976 PRDM11Q9NQV5 511 aa11.29□□□□□ -0.6
TDP1-210ENST00000554976 PDZRN3Q9UPQ7 1066 aa11.29□□□□□ -0.6
TDP1-210ENST00000554976 AFDNP55196 1824 aaKnown RBP11.28□□□□□ -0.6
TDP1-210ENST00000554976 RREB1Q92766 1687 aa11.28□□□□□ -0.6
TDP1-210ENST00000554976 GIGYF1O75420 1035 aaPredicted RBP11.28□□□□□ -0.6
TDP1-210ENST00000554976 FLIIQ13045 1269 aa11.28□□□□□ -0.6
TDP1-210ENST00000554976 IFNL2Q8IZJ0 200 aa11.28□□□□□ -0.6
TDP1-210ENST00000554976 SLIT2O94813 1529 aa11.28□□□□□ -0.6
TDP1-210ENST00000554976 ADCY9O60503 1353 aa11.28□□□□□ -0.6
TDP1-210ENST00000554976 LARP1Q6PKG0 1096 aaKnown RBP11.27□□□□□ -0.6
TDP1-210ENST00000554976 DCAF5Q96JK2 942 aa11.27□□□□□ -0.6
TDP1-210ENST00000554976 PDIA6Q15084 440 aa11.27□□□□□ -0.61
TDP1-210ENST00000554976 PCDH11XQ9BZA7 1347 aa11.27□□□□□ -0.61
TDP1-210ENST00000554976 PCDH11YQ9BZA8 1340 aa11.27□□□□□ -0.61
TDP1-210ENST00000554976 LRP10Q7Z4F1 713 aa11.27□□□□□ -0.61
TDP1-210ENST00000554976 TEFQ10587 303 aa11.26□□□□□ -0.61
TDP1-210ENST00000554976 CHMP4BQ9H444 224 aaKnown RBP11.26□□□□□ -0.61
TDP1-210ENST00000554976 PRAMEF22A3QJZ6 481 aa11.26□□□□□ -0.61
TDP1-210ENST00000554976 NUCB1Q02818 461 aa11.26□□□□□ -0.61
TDP1-210ENST00000554976 PHAXQ9H814 394 aaKnown RBP11.26□□□□□ -0.61
TDP1-210ENST00000554976 CSB-PGBD3P0DP91 1061 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 C1orf115Q9H7X2 142 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 ZNF831Q5JPB2 1677 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 F6X3S4 739 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 CCT4P50991 539 aaKnown RBP11.25□□□□□ -0.61
TDP1-210ENST00000554976 HDGFL1Q5TGJ6 251 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 ZNF790Q6PG37 636 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 CHPF2Q9P2E5 772 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 CEP85Q6P2H3 762 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 ANKRD44Q8N8A2 993 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 MEIS3Q99687 375 aa11.25□□□□□ -0.61
TDP1-210ENST00000554976 IL2RBP14784 551 aa11.24□□□□□ -0.61
TDP1-210ENST00000554976 STK31Q9BXU1 1019 aa11.24□□□□□ -0.61
TDP1-210ENST00000554976 THSD7AQ9UPZ6 1657 aa11.24□□□□□ -0.61
TDP1-210ENST00000554976 TOM1L2Q6ZVM7 507 aa11.24□□□□□ -0.61
TDP1-210ENST00000554976 HSP90AB1P08238 724 aaKnown RBP11.23□□□□□ -0.61
TDP1-210ENST00000554976 FAM161AQ3B820 660 aa11.23□□□□□ -0.61
TDP1-210ENST00000554976 NFATC2IPQ8NCF5 419 aa11.23□□□□□ -0.61
TDP1-210ENST00000554976 ZCRB1Q8TBF4 217 aaKnown RBP11.23□□□□□ -0.61
TDP1-210ENST00000554976 PROSER3Q2NL68 480 aa11.23□□□□□ -0.61
TDP1-210ENST00000554976 UBE2Q2Q8WVN8 375 aa11.23□□□□□ -0.61
TDP1-210ENST00000554976 GCC1Q96CN9 775 aa11.23□□□□□ -0.61
TDP1-210ENST00000554976 ANKRD36CQ5JPF3 1778 aa11.23□□□□□ -0.61
TDP1-210ENST00000554976 COL5A3P25940 1745 aaPredicted RBP11.22□□□□□ -0.61
TDP1-210ENST00000554976 ERVV-2B6SEH9 535 aa11.22□□□□□ -0.61
TDP1-210ENST00000554976 NECTIN2Q92692 538 aa11.22□□□□□ -0.61
TDP1-210ENST00000554976 DCTPP1Q9H773 170 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms