RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SSFA2P28290 1259 aa15.06■□□□□ 0
SHMT2-216ENST00000554975 BCS1LQ9Y276 419 aa15.06■□□□□ 0
SHMT2-216ENST00000554975 C4AP0C0L4 1744 aa15.06■□□□□ 0
SHMT2-216ENST00000554975 MMP10P09238 476 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 ITPK1Q13572 414 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 ARHGAP27Q6ZUM4 889 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 TNS4Q8IZW8 715 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 RBM46Q8TBY0 533 aaKnown RBP15.05■□□□□ -0
SHMT2-216ENST00000554975 C10orf71Q711Q0 1435 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 NSD3Q9BZ95 1437 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 KCPQ6ZWJ8 1503 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 KIF20BQ96Q89 1820 aa15.05■□□□□ -0
SHMT2-216ENST00000554975 TNRC6CQ9HCJ0 1690 aaKnown RBP15.04■□□□□ -0
SHMT2-216ENST00000554975 GNPATO15228 680 aa15.04■□□□□ -0
SHMT2-216ENST00000554975 PRELPP51888 382 aa15.04■□□□□ -0
SHMT2-216ENST00000554975 SMARCC1Q92922 1105 aaPredicted RBP15.04■□□□□ -0
SHMT2-216ENST00000554975 MYH14Q7Z406 1995 aaKnown RBP15.04■□□□□ -0
SHMT2-216ENST00000554975 LOC102724428A0A0B4J2F2 783 aa15.03■□□□□ -0
SHMT2-216ENST00000554975 SIK1P57059 783 aa15.03■□□□□ -0
SHMT2-216ENST00000554975 COL5A3P25940 1745 aaPredicted RBP15.03■□□□□ -0
SHMT2-216ENST00000554975 SMG6Q86US8 1419 aaKnown RBP15.02■□□□□ -0
SHMT2-216ENST00000554975 ST20-MTHFSA0A0A6YYL1 179 aa15.02■□□□□ -0
SHMT2-216ENST00000554975 DPEP1P16444 411 aa15.02■□□□□ -0
SHMT2-216ENST00000554975 HSP90AB2PQ58FF8 381 aa15.02■□□□□ -0
SHMT2-216ENST00000554975 C9orf131Q5VYM1 1079 aa15.02■□□□□ -0
SHMT2-216ENST00000554975 TGFB2P61812 414 aa15.01□□□□□ -0.01
SHMT2-216ENST00000554975 GGNBP2Q9H3C7 697 aa15.01□□□□□ -0.01
SHMT2-216ENST00000554975 ASAP1Q9ULH1 1129 aa15.01□□□□□ -0.01
SHMT2-216ENST00000554975 CCDC88AQ3V6T2 1871 aa15.01□□□□□ -0.01
SHMT2-216ENST00000554975 INSRP06213 1382 aa15□□□□□ -0.01
SHMT2-216ENST00000554975 FCHSD2O94868 740 aa15□□□□□ -0.01
SHMT2-216ENST00000554975 KCNA3P22001 575 aa14.99□□□□□ -0.01
SHMT2-216ENST00000554975 HMGB2P26583 209 aaKnown RBP14.99□□□□□ -0.01
SHMT2-216ENST00000554975 FSTL1Q12841 308 aa14.99□□□□□ -0.01
SHMT2-216ENST00000554975 C16orf71Q8IYS4 520 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-216ENST00000554975 PUS7Q96PZ0 661 aaKnown RBP14.99□□□□□ -0.01
SHMT2-216ENST00000554975 NCAPD2Q15021 1401 aa14.99□□□□□ -0.01
SHMT2-216ENST00000554975 PLEKHG2Q9H7P9 1386 aa14.98□□□□□ -0.01
SHMT2-216ENST00000554975 KIF7Q2M1P5 1343 aa14.98□□□□□ -0.01
SHMT2-216ENST00000554975 FYB1O15117 783 aa14.98□□□□□ -0.01
SHMT2-216ENST00000554975 NEFLP07196 543 aa14.98□□□□□ -0.01
SHMT2-216ENST00000554975 NKX1-1Q15270 411 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-216ENST00000554975 TESK2Q96S53 571 aa14.98□□□□□ -0.01
SHMT2-216ENST00000554975 RRAGCQ9HB90 399 aa14.98□□□□□ -0.01
SHMT2-216ENST00000554975 ANKRD26Q9UPS8 1709 aa14.97□□□□□ -0.01
SHMT2-216ENST00000554975 ZNF831Q5JPB2 1677 aa14.97□□□□□ -0.01
SHMT2-216ENST00000554975 ATP6V1AP38606 617 aa14.97□□□□□ -0.01
SHMT2-216ENST00000554975 FLT4P35916 1363 aa14.97□□□□□ -0.01
SHMT2-216ENST00000554975 KDRP35968 1356 aa14.97□□□□□ -0.01
SHMT2-216ENST00000554975 SLC24A1O60721 1099 aa14.96□□□□□ -0.01
SHMT2-216ENST00000554975 SLC4A9Q96Q91 983 aa14.96□□□□□ -0.01
SHMT2-216ENST00000554975 ATG3Q9NT62 314 aa14.96□□□□□ -0.01
SHMT2-216ENST00000554975 HSPA1AP0DMV8 641 aaKnown RBP14.95□□□□□ -0.02
SHMT2-216ENST00000554975 HSPA1BP0DMV9 641 aaKnown RBP14.95□□□□□ -0.02
SHMT2-216ENST00000554975 GYS1P13807 737 aa14.95□□□□□ -0.02
SHMT2-216ENST00000554975 TMF1P82094 1093 aa14.95□□□□□ -0.02
SHMT2-216ENST00000554975 CCDC87Q9NVE4 849 aa14.95□□□□□ -0.02
SHMT2-216ENST00000554975 TMOD3Q9NYL9 352 aa14.95□□□□□ -0.02
SHMT2-216ENST00000554975 RNF181Q9P0P0 153 aa14.95□□□□□ -0.02
SHMT2-216ENST00000554975 ARHGEF1Q92888 912 aaKnown RBP14.94□□□□□ -0.02
SHMT2-216ENST00000554975 DCAF5Q96JK2 942 aa14.94□□□□□ -0.02
SHMT2-216ENST00000554975 EMILIN1Q9Y6C2 1016 aa14.94□□□□□ -0.02
SHMT2-216ENST00000554975 TIAM2Q8IVF5 1701 aa14.94□□□□□ -0.02
SHMT2-216ENST00000554975 KDM2BQ8NHM5 1336 aa14.93□□□□□ -0.02
SHMT2-216ENST00000554975 TRAPPC3LQ5T215 181 aa14.93□□□□□ -0.02
SHMT2-216ENST00000554975 NLGN1Q8N2Q7 840 aa14.93□□□□□ -0.02
SHMT2-216ENST00000554975 PRKRIP1Q9H875 184 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-216ENST00000554975 AFDNP55196 1824 aaKnown RBP14.92□□□□□ -0.02
SHMT2-216ENST00000554975 RTCBQ9Y3I0 505 aaKnown RBP14.92□□□□□ -0.02
SHMT2-216ENST00000554975 ADAMTS7Q9UKP4 1686 aa14.92□□□□□ -0.02
SHMT2-216ENST00000554975 KIF24Q5T7B8 1368 aa14.91□□□□□ -0.02
SHMT2-216ENST00000554975 CHRNA5P30532 468 aa14.91□□□□□ -0.02
SHMT2-216ENST00000554975 SMC1BQ8NDV3 1235 aa14.91□□□□□ -0.02
SHMT2-216ENST00000554975 SUPT16HQ9Y5B9 1047 aaKnown RBP14.91□□□□□ -0.02
SHMT2-216ENST00000554975 PARP3Q9Y6F1 533 aa14.91□□□□□ -0.02
SHMT2-216ENST00000554975 DLEC1Q9Y238 1755 aa14.9□□□□□ -0.02
SHMT2-216ENST00000554975 TJP1Q07157 1748 aa14.9□□□□□ -0.02
SHMT2-216ENST00000554975 PHKG2P15735 406 aa14.9□□□□□ -0.02
SHMT2-216ENST00000554975 RASSF7Q02833 373 aa14.9□□□□□ -0.02
SHMT2-216ENST00000554975 PIM2Q9P1W9 311 aa14.9□□□□□ -0.02
SHMT2-216ENST00000554975 SPG7Q9UQ90 795 aa14.9□□□□□ -0.02
SHMT2-216ENST00000554975 DDR1Q08345 913 aa14.89□□□□□ -0.03
SHMT2-216ENST00000554975 CDCA8Q53HL2 280 aa14.89□□□□□ -0.03
SHMT2-216ENST00000554975 DALRD3Q5D0E6 543 aaKnown RBP14.89□□□□□ -0.03
SHMT2-216ENST00000554975 EYA1Q99502 592 aa14.89□□□□□ -0.03
SHMT2-216ENST00000554975 SRP68Q9UHB9 627 aaKnown RBP14.89□□□□□ -0.03
SHMT2-216ENST00000554975 RFC4P35249 363 aa14.88□□□□□ -0.03
SHMT2-216ENST00000554975 RC3H1Q5TC82 1133 aaKnown RBP14.88□□□□□ -0.03
SHMT2-216ENST00000554975 POLR3GLQ9BT43 218 aa14.88□□□□□ -0.03
SHMT2-216ENST00000554975 RBM42Q9BTD8 480 aaKnown RBP14.88□□□□□ -0.03
SHMT2-216ENST00000554975 CNTNAP4Q9C0A0 1308 aa14.88□□□□□ -0.03
SHMT2-216ENST00000554975 KDM6AO15550 1401 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-216ENST00000554975 RPS6KA4O75676 772 aa14.87□□□□□ -0.03
SHMT2-216ENST00000554975 ADRA2BP18089 450 aa14.87□□□□□ -0.03
SHMT2-216ENST00000554975 FKBP8Q14318 412 aa14.87□□□□□ -0.03
SHMT2-216ENST00000554975 DICER1Q9UPY3 1922 aaKnown RBP14.86□□□□□ -0.03
SHMT2-216ENST00000554975 IFNL2Q8IZJ0 200 aa14.86□□□□□ -0.03
SHMT2-216ENST00000554975 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.86□□□□□ -0.03
SHMT2-216ENST00000554975 PPM1GO15355 546 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-216ENST00000554975 HNRNPUQ00839 825 aaKnown RBP eCLIP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms