RNA–Protein interactions for RNA: ENST00000554290.1

CPSF2-203, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 4

Gene CPSF2, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-203ENST00000554290 ITPK1Q13572 414 aa25.56■■□□□ 1.68
CPSF2-203ENST00000554290 AMER1Q5JTC6 1135 aaPredicted RBP25.55■■□□□ 1.68
CPSF2-203ENST00000554290 C1orf141Q5JVX7 400 aa25.55■■□□□ 1.68
CPSF2-203ENST00000554290 AMIGO3Q86WK7 504 aa25.55■■□□□ 1.68
CPSF2-203ENST00000554290 GNPATO15228 680 aa25.54■■□□□ 1.68
CPSF2-203ENST00000554290 GRIN3BO60391 1043 aa25.54■■□□□ 1.68
CPSF2-203ENST00000554290 AEBP1Q8IUX7 1158 aa25.54■■□□□ 1.68
CPSF2-203ENST00000554290 CHD4Q14839 1912 aa25.53■■□□□ 1.68
CPSF2-203ENST00000554290 MTHFSP49914 203 aa25.53■■□□□ 1.68
CPSF2-203ENST00000554290 CABP4P57796 275 aa25.53■■□□□ 1.68
CPSF2-203ENST00000554290 SULT6B1Q6IMI4 303 aa25.53■■□□□ 1.68
CPSF2-203ENST00000554290 SMIM5Q71RC9 77 aa25.53■■□□□ 1.68
CPSF2-203ENST00000554290 RBM42Q9BTD8 480 aaKnown RBP25.53■■□□□ 1.68
CPSF2-203ENST00000554290 IL13P35225 146 aa25.51■■□□□ 1.67
CPSF2-203ENST00000554290 UBR3Q6ZT12 1888 aa25.51■■□□□ 1.67
CPSF2-203ENST00000554290 KDRP35968 1356 aa25.49■■□□□ 1.67
CPSF2-203ENST00000554290 YBX3P16989 372 aaKnown RBP eCLIP25.49■■□□□ 1.67
CPSF2-203ENST00000554290 KDM6AO15550 1401 aaPredicted RBP25.48■■□□□ 1.67
CPSF2-203ENST00000554290 RTCBQ9Y3I0 505 aaKnown RBP25.48■■□□□ 1.67
CPSF2-203ENST00000554290 RC3H1Q5TC82 1133 aaKnown RBP25.47■■□□□ 1.67
CPSF2-203ENST00000554290 PER1O15534 1290 aaPredicted RBP25.46■■□□□ 1.67
CPSF2-203ENST00000554290 TRAPPC3LQ5T215 181 aa25.46■■□□□ 1.67
CPSF2-203ENST00000554290 SLC4A9Q96Q91 983 aa25.46■■□□□ 1.67
CPSF2-203ENST00000554290 NFATC2IPQ8NCF5 419 aa25.45■■□□□ 1.66
CPSF2-203ENST00000554290 ADRA2BP18089 450 aa25.43■■□□□ 1.66
CPSF2-203ENST00000554290 AKAP4Q5JQC9 854 aa25.43■■□□□ 1.66
CPSF2-203ENST00000554290 ZNF831Q5JPB2 1677 aa25.42■■□□□ 1.66
CPSF2-203ENST00000554290 CNTNAP4Q9C0A0 1308 aa25.42■■□□□ 1.66
CPSF2-203ENST00000554290 PTCD1O75127 700 aaKnown RBP25.42■■□□□ 1.66
CPSF2-203ENST00000554290 CC2D1BQ5T0F9 858 aaKnown RBP25.42■■□□□ 1.66
CPSF2-203ENST00000554290 NLGN1Q8N2Q7 840 aa25.42■■□□□ 1.66
CPSF2-203ENST00000554290 RPS6KA4O75676 772 aa25.41■■□□□ 1.66
CPSF2-203ENST00000554290 MMP10P09238 476 aa25.4■■□□□ 1.66
CPSF2-203ENST00000554290 ARHGEF1Q92888 912 aaKnown RBP25.4■■□□□ 1.66
CPSF2-203ENST00000554290 UTRNP46939 3433 aa25.4■■□□□ 1.66
CPSF2-203ENST00000554290 DIAPH1O60610 1272 aaKnown RBP25.39■■□□□ 1.66
CPSF2-203ENST00000554290 HMOX1P09601 288 aa25.39■■□□□ 1.66
CPSF2-203ENST00000554290 RFC4P35249 363 aa25.39■■□□□ 1.66
CPSF2-203ENST00000554290 NPC1L1Q9UHC9 1359 aa25.36■■□□□ 1.65
CPSF2-203ENST00000554290 SLC52A2Q9HAB3 445 aa25.36■■□□□ 1.65
CPSF2-203ENST00000554290 CRKLP46109 303 aaKnown RBP25.35■■□□□ 1.65
CPSF2-203ENST00000554290 C1QTNF8P60827 252 aa25.34■■□□□ 1.65
CPSF2-203ENST00000554290 LGR6Q9HBX8 967 aa25.34■■□□□ 1.65
CPSF2-203ENST00000554290 COL5A3P25940 1745 aaPredicted RBP25.34■■□□□ 1.65
CPSF2-203ENST00000554290 RNMTO43148 476 aaKnown RBP25.33■■□□□ 1.65
CPSF2-203ENST00000554290 GIGYF1O75420 1035 aaPredicted RBP25.33■■□□□ 1.65
CPSF2-203ENST00000554290 GYS1P13807 737 aa25.33■■□□□ 1.65
CPSF2-203ENST00000554290 CNGB1Q14028 1251 aaPredicted RBP25.32■■□□□ 1.64
CPSF2-203ENST00000554290 WWC3Q9ULE0 1092 aa25.32■■□□□ 1.64
CPSF2-203ENST00000554290 TGFB2P61812 414 aa25.31■■□□□ 1.64
CPSF2-203ENST00000554290 MTHFSDQ2M296 383 aaKnown RBP25.31■■□□□ 1.64
CPSF2-203ENST00000554290 PARP3Q9Y6F1 533 aa25.31■■□□□ 1.64
CPSF2-203ENST00000554290 SCN11AQ9UI33 1791 aa25.31■■□□□ 1.64
CPSF2-203ENST00000554290 CCDC87Q9NVE4 849 aa25.3■■□□□ 1.64
CPSF2-203ENST00000554290 GOLGB1Q14789 3259 aaKnown RBP25.29■■□□□ 1.64
CPSF2-203ENST00000554290 U2SURPO15042 1029 aaKnown RBP25.28■■□□□ 1.64
CPSF2-203ENST00000554290 CICQ96RK0 1608 aaPredicted RBP25.27■■□□□ 1.64
CPSF2-203ENST00000554290 INTS5Q6P9B9 1019 aaKnown RBP25.27■■□□□ 1.64
CPSF2-203ENST00000554290 DNAJC10Q8IXB1 793 aa25.27■■□□□ 1.64
CPSF2-203ENST00000554290 SLC39A6Q13433 755 aa25.26■■□□□ 1.63
CPSF2-203ENST00000554290 USP42Q9H9J4 1324 aaKnown RBP25.26■■□□□ 1.63
CPSF2-203ENST00000554290 ATP10DQ9P241 1426 aa25.26■■□□□ 1.63
CPSF2-203ENST00000554290 MRC1P22897 1456 aa25.26■■□□□ 1.63
CPSF2-203ENST00000554290 MYH14Q7Z406 1995 aaKnown RBP25.25■■□□□ 1.63
CPSF2-203ENST00000554290 A0A0G2JLW4 131 aa25.25■■□□□ 1.63
CPSF2-203ENST00000554290 SRP68Q9UHB9 627 aaKnown RBP25.25■■□□□ 1.63
CPSF2-203ENST00000554290 C10orf71Q711Q0 1435 aa25.25■■□□□ 1.63
CPSF2-203ENST00000554290 PXDNLA1KZ92 1463 aa25.25■■□□□ 1.63
CPSF2-203ENST00000554290 SENP3-EIF4A1A0A087X0R7 540 aa25.24■■□□□ 1.63
CPSF2-203ENST00000554290 TJP1Q07157 1748 aa25.23■■□□□ 1.63
CPSF2-203ENST00000554290 ZPR1O75312 459 aa25.23■■□□□ 1.63
CPSF2-203ENST00000554290 CFAP53Q96M91 514 aa25.23■■□□□ 1.63
CPSF2-203ENST00000554290 C4AP0C0L4 1744 aa25.23■■□□□ 1.63
CPSF2-203ENST00000554290 COL3A1P02461 1466 aaPredicted RBP25.22■■□□□ 1.63
CPSF2-203ENST00000554290 CYP19A1P11511 503 aaPredicted RBP25.22■■□□□ 1.63
CPSF2-203ENST00000554290 FKBP8Q14318 412 aa25.22■■□□□ 1.63
CPSF2-203ENST00000554290 VSIG10Q8N0Z9 540 aa25.22■■□□□ 1.63
CPSF2-203ENST00000554290 GAS2L2Q8NHY3 880 aa25.22■■□□□ 1.63
CPSF2-203ENST00000554290 GPBP1L1Q9HC44 474 aaPredicted RBP25.22■■□□□ 1.63
CPSF2-203ENST00000554290 BCS1LQ9Y276 419 aa25.22■■□□□ 1.63
CPSF2-203ENST00000554290 KIF13BQ9NQT8 1826 aa25.21■■□□□ 1.63
CPSF2-203ENST00000554290 ADCY9O60503 1353 aa25.2■■□□□ 1.63
CPSF2-203ENST00000554290 GNAT3A8MTJ3 354 aa25.2■■□□□ 1.62
CPSF2-203ENST00000554290 DPEP1P16444 411 aa25.2■■□□□ 1.62
CPSF2-203ENST00000554290 TEFQ10587 303 aa25.2■■□□□ 1.62
CPSF2-203ENST00000554290 TTC5Q8N0Z6 440 aa25.2■■□□□ 1.62
CPSF2-203ENST00000554290 SOS1Q07889 1333 aaPredicted RBP25.19■■□□□ 1.62
CPSF2-203ENST00000554290 ADAMTS7Q9UKP4 1686 aa25.19■■□□□ 1.62
CPSF2-203ENST00000554290 USPL1Q5W0Q7 1092 aa25.18■■□□□ 1.62
CPSF2-203ENST00000554290 KCPQ6ZWJ8 1503 aa25.17■■□□□ 1.62
CPSF2-203ENST00000554290 FCHSD2O94868 740 aa25.17■■□□□ 1.62
CPSF2-203ENST00000554290 DDR1Q08345 913 aa25.17■■□□□ 1.62
CPSF2-203ENST00000554290 NUDCQ9Y266 331 aa25.17■■□□□ 1.62
CPSF2-203ENST00000554290 STARD3NLO95772 234 aa25.16■■□□□ 1.62
CPSF2-203ENST00000554290 TM4SF1P30408 202 aa25.16■■□□□ 1.62
CPSF2-203ENST00000554290 IL17REQ8NFR9 667 aa25.16■■□□□ 1.62
CPSF2-203ENST00000554290 ZNF526Q8TF50 670 aaPredicted RBP25.16■■□□□ 1.62
CPSF2-203ENST00000554290 ARHGAP27Q6ZUM4 889 aa25.15■■□□□ 1.62
CPSF2-203ENST00000554290 PIM2Q9P1W9 311 aa25.15■■□□□ 1.62
CPSF2-203ENST00000554290 NARFQ9UHQ1 456 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms