RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 KCNA3P22001 575 aa10.74□□□□□ -0.69
ABCD4-220ENST00000553998 ATP6V1AP38606 617 aa10.74□□□□□ -0.69
ABCD4-220ENST00000553998 FSTL1Q12841 308 aa10.74□□□□□ -0.69
ABCD4-220ENST00000553998 TRAPPC3LQ5T215 181 aa10.74□□□□□ -0.69
ABCD4-220ENST00000553998 RC3H1Q5TC82 1133 aaKnown RBP10.74□□□□□ -0.69
ABCD4-220ENST00000553998 ATG3Q9NT62 314 aa10.74□□□□□ -0.69
ABCD4-220ENST00000553998 TAF1LQ8IZX4 1826 aa10.74□□□□□ -0.69
ABCD4-220ENST00000553998 C10orf71Q711Q0 1435 aa10.74□□□□□ -0.69
ABCD4-220ENST00000553998 RGPD2P0DJD1 1756 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 ZEB1P37275 1124 aaPredicted RBP10.73□□□□□ -0.69
ABCD4-220ENST00000553998 TMF1P82094 1093 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 COL13A1Q5TAT6 717 aaPredicted RBP10.73□□□□□ -0.69
ABCD4-220ENST00000553998 ARHGAP27Q6ZUM4 889 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 IFNL2Q8IZJ0 200 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 TMOD3Q9NYL9 352 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 BCS1LQ9Y276 419 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 WASHC2AQ641Q2 1341 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 PLEKHG2Q9H7P9 1386 aa10.73□□□□□ -0.69
ABCD4-220ENST00000553998 MAP2P11137 1827 aaKnown RBP10.72□□□□□ -0.69
ABCD4-220ENST00000553998 UBR3Q6ZT12 1888 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 GYS1P13807 737 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 PHKG2P15735 406 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 DPEP1P16444 411 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 ARHGEF1Q92888 912 aaKnown RBP10.72□□□□□ -0.69
ABCD4-220ENST00000553998 SLC4A9Q96Q91 983 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 CCDC87Q9NVE4 849 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 RTCBQ9Y3I0 505 aaKnown RBP10.72□□□□□ -0.69
ABCD4-220ENST00000553998 EMILIN1Q9Y6C2 1016 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 KDRP35968 1356 aa10.72□□□□□ -0.69
ABCD4-220ENST00000553998 RPS6KA4O75676 772 aa10.71□□□□□ -0.69
ABCD4-220ENST00000553998 C9orf131Q5VYM1 1079 aa10.71□□□□□ -0.69
ABCD4-220ENST00000553998 DCAF5Q96JK2 942 aa10.71□□□□□ -0.69
ABCD4-220ENST00000553998 EYA1Q99502 592 aa10.71□□□□□ -0.69
ABCD4-220ENST00000553998 CNTNAP4Q9C0A0 1308 aa10.7□□□□□ -0.7
ABCD4-220ENST00000553998 ERVV-2B6SEH9 535 aa10.7□□□□□ -0.7
ABCD4-220ENST00000553998 FCHSD2O94868 740 aa10.7□□□□□ -0.7
ABCD4-220ENST00000553998 CARD14Q9BXL6 1004 aa10.7□□□□□ -0.7
ABCD4-220ENST00000553998 PKD1L3Q7Z443 1732 aa10.7□□□□□ -0.7
ABCD4-220ENST00000553998 KIAA1551Q9HCM1 1747 aa10.7□□□□□ -0.7
ABCD4-220ENST00000553998 KDM2BQ8NHM5 1336 aa10.69□□□□□ -0.7
ABCD4-220ENST00000553998 PRELPP51888 382 aa10.69□□□□□ -0.7
ABCD4-220ENST00000553998 PIM2Q9P1W9 311 aa10.69□□□□□ -0.7
ABCD4-220ENST00000553998 PARP3Q9Y6F1 533 aa10.69□□□□□ -0.7
ABCD4-220ENST00000553998 KIF13BQ9NQT8 1826 aa10.69□□□□□ -0.7
ABCD4-220ENST00000553998 RFC4P35249 363 aa10.68□□□□□ -0.7
ABCD4-220ENST00000553998 HTRA3P83110 453 aa10.68□□□□□ -0.7
ABCD4-220ENST00000553998 CDCA8Q53HL2 280 aa10.68□□□□□ -0.7
ABCD4-220ENST00000553998 C16orf71Q8IYS4 520 aaPredicted RBP10.68□□□□□ -0.7
ABCD4-220ENST00000553998 DALRD3Q5D0E6 543 aaKnown RBP10.67□□□□□ -0.7
ABCD4-220ENST00000553998 POLKQ9UBT6 870 aa10.67□□□□□ -0.7
ABCD4-220ENST00000553998 ITGB4P16144 1822 aa10.67□□□□□ -0.7
ABCD4-220ENST00000553998 KIF20BQ96Q89 1820 aa10.67□□□□□ -0.7
ABCD4-220ENST00000553998 ZC3H4Q9UPT8 1303 aaKnown RBP10.66□□□□□ -0.7
ABCD4-220ENST00000553998 EIF4G2P78344 907 aaKnown RBP eCLIP10.66□□□□□ -0.7
ABCD4-220ENST00000553998 TNS4Q8IZW8 715 aa10.66□□□□□ -0.7
ABCD4-220ENST00000553998 SMC1BQ8NDV3 1235 aa10.66□□□□□ -0.7
ABCD4-220ENST00000553998 RRAGCQ9HB90 399 aa10.66□□□□□ -0.7
ABCD4-220ENST00000553998 WDR90Q96KV7 1748 aa10.65□□□□□ -0.7
ABCD4-220ENST00000553998 HSP90AB1P08238 724 aaKnown RBP10.65□□□□□ -0.7
ABCD4-220ENST00000553998 TM4SF1P30408 202 aa10.65□□□□□ -0.7
ABCD4-220ENST00000553998 RBM42Q9BTD8 480 aaKnown RBP10.65□□□□□ -0.7
ABCD4-220ENST00000553998 RNF181Q9P0P0 153 aa10.65□□□□□ -0.7
ABCD4-220ENST00000553998 ZNF831Q5JPB2 1677 aa10.65□□□□□ -0.7
ABCD4-220ENST00000553998 KCPQ6ZWJ8 1503 aa10.64□□□□□ -0.71
ABCD4-220ENST00000553998 PPM1GO15355 546 aaPredicted RBP10.64□□□□□ -0.71
ABCD4-220ENST00000553998 DDR1Q08345 913 aa10.64□□□□□ -0.71
ABCD4-220ENST00000553998 EIF4A2Q14240 407 aaKnown RBP10.64□□□□□ -0.71
ABCD4-220ENST00000553998 FKBP8Q14318 412 aa10.64□□□□□ -0.71
ABCD4-220ENST00000553998 KDM6AO15550 1401 aaPredicted RBP10.64□□□□□ -0.71
ABCD4-220ENST00000553998 C4AP0C0L4 1744 aa10.64□□□□□ -0.71
ABCD4-220ENST00000553998 USP42Q9H9J4 1324 aaKnown RBP10.63□□□□□ -0.71
ABCD4-220ENST00000553998 POLRMTO00411 1230 aaKnown RBP10.63□□□□□ -0.71
ABCD4-220ENST00000553998 GLTPD2A6NH11 291 aa10.62□□□□□ -0.71
ABCD4-220ENST00000553998 VEGFAP15692 232 aaPredicted RBP10.62□□□□□ -0.71
ABCD4-220ENST00000553998 CHRNA5P30532 468 aa10.62□□□□□ -0.71
ABCD4-220ENST00000553998 CRKLP46109 303 aaKnown RBP10.62□□□□□ -0.71
ABCD4-220ENST00000553998 AMOTQ4VCS5 1084 aa10.62□□□□□ -0.71
ABCD4-220ENST00000553998 PLEKHO1Q53GL0 409 aaPredicted RBP10.62□□□□□ -0.71
ABCD4-220ENST00000553998 N4BP2Q86UW6 1770 aaPredicted RBP10.62□□□□□ -0.71
ABCD4-220ENST00000553998 HSPA5P11021 654 aaKnown RBP10.61□□□□□ -0.71
ABCD4-220ENST00000553998 CABP4P57796 275 aa10.61□□□□□ -0.71
ABCD4-220ENST00000553998 INTS5Q6P9B9 1019 aaKnown RBP10.61□□□□□ -0.71
ABCD4-220ENST00000553998 SRP68Q9UHB9 627 aaKnown RBP10.61□□□□□ -0.71
ABCD4-220ENST00000553998 BRCA1P38398 1863 aaKnown RBP10.6□□□□□ -0.71
ABCD4-220ENST00000553998 CAPN15O75808 1086 aa10.6□□□□□ -0.71
ABCD4-220ENST00000553998 HSPA1AP0DMV8 641 aaKnown RBP10.6□□□□□ -0.71
ABCD4-220ENST00000553998 HSPA1BP0DMV9 641 aaKnown RBP10.6□□□□□ -0.71
ABCD4-220ENST00000553998 LMNB1P20700 586 aa10.6□□□□□ -0.71
ABCD4-220ENST00000553998 ANKRD26Q9UPS8 1709 aa10.6□□□□□ -0.71
ABCD4-220ENST00000553998 POTECB2RU33 542 aa10.59□□□□□ -0.71
ABCD4-220ENST00000553998 PTCD1O75127 700 aaKnown RBP10.59□□□□□ -0.71
ABCD4-220ENST00000553998 NFATC2IPQ8NCF5 419 aa10.59□□□□□ -0.71
ABCD4-220ENST00000553998 ARFGEF1Q9Y6D6 1849 aa10.58□□□□□ -0.72
ABCD4-220ENST00000553998 MTHFSP49914 203 aa10.58□□□□□ -0.72
ABCD4-220ENST00000553998 ZNF530Q6P9A1 599 aaPredicted RBP10.58□□□□□ -0.72
ABCD4-220ENST00000553998 COL5A3P25940 1745 aaPredicted RBP10.58□□□□□ -0.72
ABCD4-220ENST00000553998 RASSF7Q02833 373 aa10.57□□□□□ -0.72
ABCD4-220ENST00000553998 USPL1Q5W0Q7 1092 aa10.57□□□□□ -0.72
ABCD4-220ENST00000553998 TTLL6Q8N841 843 aa10.57□□□□□ -0.72
ABCD4-220ENST00000553998 NARFQ9UHQ1 456 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms