RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 RAPGEF4Q8WZA2 1011 aa16.14■□□□□ 0.17
VIPAS39-206ENST00000553888 MSH5O43196 834 aa16.13■□□□□ 0.17
VIPAS39-206ENST00000553888 BTBD11A6QL63 1104 aa16.12■□□□□ 0.17
VIPAS39-206ENST00000553888 SLC4A10Q6U841 1118 aa16.12■□□□□ 0.17
VIPAS39-206ENST00000553888 CPDO75976 1380 aa16.12■□□□□ 0.17
VIPAS39-206ENST00000553888 EIF2S2P20042 333 aaKnown RBP16.12■□□□□ 0.17
VIPAS39-206ENST00000553888 SIPA1L3O60292 1781 aaPredicted RBP16.12■□□□□ 0.17
VIPAS39-206ENST00000553888 EIF4A1P60842 406 aaKnown RBP16.12■□□□□ 0.17
VIPAS39-206ENST00000553888 HDAC1Q13547 482 aaPredicted RBP16.12■□□□□ 0.17
VIPAS39-206ENST00000553888 C8orf34Q49A92 452 aa16.11■□□□□ 0.17
VIPAS39-206ENST00000553888 SIRT2Q8IXJ6 389 aa16.11■□□□□ 0.17
VIPAS39-206ENST00000553888 PRAMEF22A3QJZ6 481 aa16.11■□□□□ 0.17
VIPAS39-206ENST00000553888 ANXA1P04083 346 aa16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 TATP17735 454 aaPredicted RBP16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 STK31Q9BXU1 1019 aa16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 SCN11AQ9UI33 1791 aa16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 HDGFL1Q5TGJ6 251 aa16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 INTS3Q68E01 1043 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 PHAXQ9H814 394 aaKnown RBP16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 CACNA1FO60840 1977 aa16.1■□□□□ 0.17
VIPAS39-206ENST00000553888 PTPRCP08575 1304 aa16.09■□□□□ 0.17
VIPAS39-206ENST00000553888 CCDC30Q5VVM6 783 aa16.09■□□□□ 0.17
VIPAS39-206ENST00000553888 STRN4Q9NRL3 753 aa16.09■□□□□ 0.17
VIPAS39-206ENST00000553888 ROBO1Q9Y6N7 1651 aa16.09■□□□□ 0.17
VIPAS39-206ENST00000553888 KDM6AO15550 1401 aaPredicted RBP16.09■□□□□ 0.17
VIPAS39-206ENST00000553888 FLIIQ13045 1269 aa16.09■□□□□ 0.17
VIPAS39-206ENST00000553888 MEIS3Q99687 375 aa16.09■□□□□ 0.17
VIPAS39-206ENST00000553888 SLC39A6Q13433 755 aa16.08■□□□□ 0.17
VIPAS39-206ENST00000553888 PHKG2P15735 406 aa16.08■□□□□ 0.16
VIPAS39-206ENST00000553888 FKBP5Q13451 457 aaPredicted RBP16.08■□□□□ 0.16
VIPAS39-206ENST00000553888 TOM1L2Q6ZVM7 507 aa16.08■□□□□ 0.16
VIPAS39-206ENST00000553888 CYP27B1O15528 508 aa16.08■□□□□ 0.16
VIPAS39-206ENST00000553888 BABAM1Q9NWV8 329 aa16.08■□□□□ 0.16
VIPAS39-206ENST00000553888 ADAMTS7Q9UKP4 1686 aa16.07■□□□□ 0.16
VIPAS39-206ENST00000553888 COL5A2P05997 1499 aaPredicted RBP16.07■□□□□ 0.16
VIPAS39-206ENST00000553888 FAM161AQ3B820 660 aa16.07■□□□□ 0.16
VIPAS39-206ENST00000553888 SMC5Q8IY18 1101 aa16.07■□□□□ 0.16
VIPAS39-206ENST00000553888 CHPF2Q9P2E5 772 aa16.07■□□□□ 0.16
VIPAS39-206ENST00000553888 PKD1L3Q7Z443 1732 aa16.06■□□□□ 0.16
VIPAS39-206ENST00000553888 ABCC6O95255 1503 aa16.06■□□□□ 0.16
VIPAS39-206ENST00000553888 LARP1Q6PKG0 1096 aaKnown RBP16.06■□□□□ 0.16
VIPAS39-206ENST00000553888 PKNOX2Q96KN3 472 aa16.06■□□□□ 0.16
VIPAS39-206ENST00000553888 USP35Q9P2H5 1018 aa16.06■□□□□ 0.16
VIPAS39-206ENST00000553888 WDR17Q8IZU2 1322 aa16.06■□□□□ 0.16
VIPAS39-206ENST00000553888 NFATC2IPQ8NCF5 419 aa16.05■□□□□ 0.16
VIPAS39-206ENST00000553888 LNPKQ9C0E8 428 aa16.05■□□□□ 0.16
VIPAS39-206ENST00000553888 SPG7Q9UQ90 795 aa16.05■□□□□ 0.16
VIPAS39-206ENST00000553888 LTBP4Q8N2S1 1624 aa16.04■□□□□ 0.16
VIPAS39-206ENST00000553888 PROSER3Q2NL68 480 aa16.04■□□□□ 0.16
VIPAS39-206ENST00000553888 ATP10DQ9P241 1426 aa16.03■□□□□ 0.16
VIPAS39-206ENST00000553888 C5P01031 1676 aa16.03■□□□□ 0.16
VIPAS39-206ENST00000553888 IFNL2Q8IZJ0 200 aa16.03■□□□□ 0.16
VIPAS39-206ENST00000553888 SEC24BO95487 1268 aa16.03■□□□□ 0.16
VIPAS39-206ENST00000553888 SLC52A2Q9HAB3 445 aa16.03■□□□□ 0.16
VIPAS39-206ENST00000553888 OVOS2A0A0G2JMS6 1433 aa16.03■□□□□ 0.16
VIPAS39-206ENST00000553888 GIGYF1O75420 1035 aaPredicted RBP16.02■□□□□ 0.15
VIPAS39-206ENST00000553888 ANKRD45Q5TZF3 282 aa16.02■□□□□ 0.15
VIPAS39-206ENST00000553888 EVA1CP58658 441 aa16.01■□□□□ 0.15
VIPAS39-206ENST00000553888 NUCB1Q02818 461 aa16.01■□□□□ 0.15
VIPAS39-206ENST00000553888 PARP4Q9UKK3 1724 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-206ENST00000553888 ANP32AP39687 249 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-206ENST00000553888 CHMP4BQ9H444 224 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-206ENST00000553888 CEP85Q6P2H3 762 aa16.01■□□□□ 0.15
VIPAS39-206ENST00000553888 SHANK3Q9BYB0 1731 aa16■□□□□ 0.15
VIPAS39-206ENST00000553888 BTG4Q9NY30 223 aa16■□□□□ 0.15
VIPAS39-206ENST00000553888 ZNF790Q6PG37 636 aa16■□□□□ 0.15
VIPAS39-206ENST00000553888 CHD1LQ86WJ1 897 aa16■□□□□ 0.15
VIPAS39-206ENST00000553888 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16■□□□□ 0.152e-6■■■■□ 24.3
VIPAS39-206ENST00000553888 APBB1O00213 710 aa15.99■□□□□ 0.15
VIPAS39-206ENST00000553888 CCT4P50991 539 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-206ENST00000553888 HEG1Q9ULI3 1381 aa15.99■□□□□ 0.15
VIPAS39-206ENST00000553888 SOS1Q07889 1333 aaPredicted RBP15.99■□□□□ 0.15
VIPAS39-206ENST00000553888 PIP4K2AP48426 406 aaPredicted RBP15.99■□□□□ 0.15
VIPAS39-206ENST00000553888 DDX54Q8TDD1 881 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-206ENST00000553888 N4BP2Q86UW6 1770 aaPredicted RBP15.99■□□□□ 0.15
VIPAS39-206ENST00000553888 PDIA4P13667 645 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 ANKRD44Q8N8A2 993 aa15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 ZCRB1Q8TBF4 217 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 ZNF496Q96IT1 587 aaPredicted RBP15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 DCAF5Q96JK2 942 aa15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 KAT6BQ8WYB5 2073 aa15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 PI4KAP2A4QPH2 592 aa15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 PIP4K2BP78356 416 aa15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 PI4KAP1Q8N8J0 262 aa15.98■□□□□ 0.15
VIPAS39-206ENST00000553888 HOXB7P09629 217 aa15.97■□□□□ 0.15
VIPAS39-206ENST00000553888 CARD10Q9BWT7 1032 aa15.97■□□□□ 0.15
VIPAS39-206ENST00000553888 IL2RBP14784 551 aa15.97■□□□□ 0.15
VIPAS39-206ENST00000553888 COL16A1Q07092 1604 aaPredicted RBP15.97■□□□□ 0.15
VIPAS39-206ENST00000553888 GCC1Q96CN9 775 aa15.96■□□□□ 0.15
VIPAS39-206ENST00000553888 AHDC1Q5TGY3 1603 aaPredicted RBP15.96■□□□□ 0.15
VIPAS39-206ENST00000553888 CABP4P57796 275 aa15.96■□□□□ 0.15
VIPAS39-206ENST00000553888 ADCY9O60503 1353 aa15.96■□□□□ 0.15
VIPAS39-206ENST00000553888 SMARCA5O60264 1052 aaPredicted RBP15.95■□□□□ 0.14
VIPAS39-206ENST00000553888 AIMP1Q12904 312 aaKnown RBP15.95■□□□□ 0.14
VIPAS39-206ENST00000553888 C16orf71Q8IYS4 520 aaPredicted RBP15.95■□□□□ 0.14
VIPAS39-206ENST00000553888 MRC1P22897 1456 aa15.95■□□□□ 0.14
VIPAS39-206ENST00000553888 PHLPP1O60346 1717 aa15.95■□□□□ 0.14
VIPAS39-206ENST00000553888 IPO9Q96P70 1041 aaKnown RBP15.95■□□□□ 0.14
VIPAS39-206ENST00000553888 USP44Q9H0E7 712 aa15.95■□□□□ 0.14
VIPAS39-206ENST00000553888 DBF4Q9UBU7 674 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms