RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 IFNL2Q8IZJ0 200 aa16.34■□□□□ 0.21
SRP54-203ENST00000553544 RTCBQ9Y3I0 505 aaKnown RBP16.34■□□□□ 0.21
SRP54-203ENST00000553544 EMILIN1Q9Y6C2 1016 aa16.34■□□□□ 0.21
SRP54-203ENST00000553544 ATG3Q9NT62 314 aa16.33■□□□□ 0.2
SRP54-203ENST00000553544 TAF1LQ8IZX4 1826 aa16.32■□□□□ 0.2
SRP54-203ENST00000553544 EYA1Q99502 592 aa16.32■□□□□ 0.2
SRP54-203ENST00000553544 WASHC2AQ641Q2 1341 aa16.31■□□□□ 0.2
SRP54-203ENST00000553544 PHKG2P15735 406 aa16.31■□□□□ 0.2
SRP54-203ENST00000553544 CARD14Q9BXL6 1004 aa16.31■□□□□ 0.2
SRP54-203ENST00000553544 CCDC87Q9NVE4 849 aa16.31■□□□□ 0.2
SRP54-203ENST00000553544 FCHSD2O94868 740 aa16.3■□□□□ 0.2
SRP54-203ENST00000553544 DPEP1P16444 411 aa16.3■□□□□ 0.2
SRP54-203ENST00000553544 EIF4G2P78344 907 aaKnown RBP eCLIP16.3■□□□□ 0.28e-7■■■■■ 28.7
SRP54-203ENST00000553544 RC3H1Q5TC82 1133 aaKnown RBP16.3■□□□□ 0.2
SRP54-203ENST00000553544 C16orf71Q8IYS4 520 aaPredicted RBP16.3■□□□□ 0.2
SRP54-203ENST00000553544 ARHGEF1Q92888 912 aaKnown RBP16.3■□□□□ 0.2
SRP54-203ENST00000553544 HSPA5P11021 654 aaKnown RBP16.29■□□□□ 0.2
SRP54-203ENST00000553544 ADRA2BP18089 450 aa16.29■□□□□ 0.2
SRP54-203ENST00000553544 RFC4P35249 363 aa16.29■□□□□ 0.2
SRP54-203ENST00000553544 NMRK2Q9NPI5 230 aa16.29■□□□□ 0.2
SRP54-203ENST00000553544 PARP3Q9Y6F1 533 aa16.29■□□□□ 0.2
SRP54-203ENST00000553544 ERVV-2B6SEH9 535 aa16.28■□□□□ 0.2
SRP54-203ENST00000553544 RBM46Q8TBY0 533 aaKnown RBP16.28■□□□□ 0.2
SRP54-203ENST00000553544 RBM42Q9BTD8 480 aaKnown RBP16.28■□□□□ 0.2
SRP54-203ENST00000553544 UBR3Q6ZT12 1888 aa16.28■□□□□ 0.2
SRP54-203ENST00000553544 PXDNLA1KZ92 1463 aa16.28■□□□□ 0.2
SRP54-203ENST00000553544 ITGB4P16144 1822 aa16.27■□□□□ 0.2
SRP54-203ENST00000553544 C9orf131Q5VYM1 1079 aa16.27■□□□□ 0.2
SRP54-203ENST00000553544 PIM2Q9P1W9 311 aa16.27■□□□□ 0.2
SRP54-203ENST00000553544 ANKRD26Q9UPS8 1709 aa16.27■□□□□ 0.19
SRP54-203ENST00000553544 RPS6KA4O75676 772 aa16.26■□□□□ 0.19
SRP54-203ENST00000553544 GYS1P13807 737 aa16.26■□□□□ 0.19
SRP54-203ENST00000553544 NCAPD2Q15021 1401 aa16.26■□□□□ 0.19
SRP54-203ENST00000553544 TOGARAM1Q9Y4F4 1720 aa16.25■□□□□ 0.19
SRP54-203ENST00000553544 HSP90AB1P08238 724 aaKnown RBP16.25■□□□□ 0.19
SRP54-203ENST00000553544 KCNA3P22001 575 aa16.25■□□□□ 0.19
SRP54-203ENST00000553544 FSTL1Q12841 308 aa16.25■□□□□ 0.19
SRP54-203ENST00000553544 SLC4A9Q96Q91 983 aa16.25■□□□□ 0.19
SRP54-203ENST00000553544 POLKQ9UBT6 870 aa16.25■□□□□ 0.19
SRP54-203ENST00000553544 DALRD3Q5D0E6 543 aaKnown RBP16.24■□□□□ 0.19
SRP54-203ENST00000553544 KLRG1Q96E93 195 aa16.24■□□□□ 0.19
SRP54-203ENST00000553544 DCAF5Q96JK2 942 aa16.24■□□□□ 0.19
SRP54-203ENST00000553544 MAP2P11137 1827 aaKnown RBP16.24■□□□□ 0.19
SRP54-203ENST00000553544 KDM2BQ8NHM5 1336 aa16.23■□□□□ 0.19
SRP54-203ENST00000553544 CICQ96RK0 1608 aaPredicted RBP16.23■□□□□ 0.19
SRP54-203ENST00000553544 CNTNAP4Q9C0A0 1308 aa16.22■□□□□ 0.19
SRP54-203ENST00000553544 CABP4P57796 275 aa16.22■□□□□ 0.19
SRP54-203ENST00000553544 PLEKHO1Q53GL0 409 aaPredicted RBP16.22■□□□□ 0.19
SRP54-203ENST00000553544 C10orf71Q711Q0 1435 aa16.21■□□□□ 0.19
SRP54-203ENST00000553544 EIF4A2Q14240 407 aaKnown RBP16.21■□□□□ 0.19
SRP54-203ENST00000553544 JMYQ8N9B5 988 aa16.21■□□□□ 0.19
SRP54-203ENST00000553544 RRAGCQ9HB90 399 aa16.21■□□□□ 0.19
SRP54-203ENST00000553544 PKD1L3Q7Z443 1732 aa16.21■□□□□ 0.19
SRP54-203ENST00000553544 HTRA3P83110 453 aa16.2■□□□□ 0.18
SRP54-203ENST00000553544 COL13A1Q5TAT6 717 aaPredicted RBP16.2■□□□□ 0.18
SRP54-203ENST00000553544 RNF181Q9P0P0 153 aa16.2■□□□□ 0.18
SRP54-203ENST00000553544 PLEKHG2Q9H7P9 1386 aa16.2■□□□□ 0.18
SRP54-203ENST00000553544 KDRP35968 1356 aa16.19■□□□□ 0.18
SRP54-203ENST00000553544 PTCD1O75127 700 aaKnown RBP16.19■□□□□ 0.18
SRP54-203ENST00000553544 TNNT2P45379 298 aaPredicted RBP16.19■□□□□ 0.18
SRP54-203ENST00000553544 AMOTQ4VCS5 1084 aa16.19■□□□□ 0.18
SRP54-203ENST00000553544 POLR3GLQ9BT43 218 aa16.19■□□□□ 0.18
SRP54-203ENST00000553544 MTHFSP49914 203 aa16.18■□□□□ 0.18
SRP54-203ENST00000553544 KIF13BQ9NQT8 1826 aa16.17■□□□□ 0.18
SRP54-203ENST00000553544 CRKLP46109 303 aaKnown RBP16.17■□□□□ 0.18
SRP54-203ENST00000553544 FKBP8Q14318 412 aa16.17■□□□□ 0.18
SRP54-203ENST00000553544 ZNF530Q6P9A1 599 aaPredicted RBP16.17■□□□□ 0.18
SRP54-203ENST00000553544 NFATC2IPQ8NCF5 419 aa16.17■□□□□ 0.18
SRP54-203ENST00000553544 SMC1BQ8NDV3 1235 aa16.17■□□□□ 0.18
SRP54-203ENST00000553544 PANK3Q9H999 370 aa16.17■□□□□ 0.18
SRP54-203ENST00000553544 N4BP2Q86UW6 1770 aaPredicted RBP16.17■□□□□ 0.18
SRP54-203ENST00000553544 SRP68Q9UHB9 627 aaKnown RBP16.16■□□□□ 0.18
SRP54-203ENST00000553544 TM4SF1P30408 202 aa16.15■□□□□ 0.18
SRP54-203ENST00000553544 CHRNA5P30532 468 aa16.15■□□□□ 0.18
SRP54-203ENST00000553544 DDR1Q08345 913 aa16.15■□□□□ 0.18
SRP54-203ENST00000553544 C1orf141Q5JVX7 400 aa16.15■□□□□ 0.18
SRP54-203ENST00000553544 ZPR1O75312 459 aa16.14■□□□□ 0.17
SRP54-203ENST00000553544 CAPN15O75808 1086 aa16.14■□□□□ 0.17
SRP54-203ENST00000553544 TNS4Q8IZW8 715 aa16.14■□□□□ 0.17
SRP54-203ENST00000553544 USP42Q9H9J4 1324 aaKnown RBP16.14■□□□□ 0.17
SRP54-203ENST00000553544 PCNTO95613 3336 aa16.14■□□□□ 0.17
SRP54-203ENST00000553544 C4AP0C0L4 1744 aa16.13■□□□□ 0.17
SRP54-203ENST00000553544 KCPQ6ZWJ8 1503 aa16.13■□□□□ 0.17
SRP54-203ENST00000553544 KIAA1551Q9HCM1 1747 aa16.12■□□□□ 0.17
SRP54-203ENST00000553544 POLRMTO00411 1230 aaKnown RBP16.12■□□□□ 0.17
SRP54-203ENST00000553544 VEGFAP15692 232 aaPredicted RBP16.12■□□□□ 0.17
SRP54-203ENST00000553544 INTS5Q6P9B9 1019 aaKnown RBP16.12■□□□□ 0.17
SRP54-203ENST00000553544 KIF7Q2M1P5 1343 aa16.12■□□□□ 0.17
SRP54-203ENST00000553544 PRELPP51888 382 aa16.11■□□□□ 0.17
SRP54-203ENST00000553544 ZC3H4Q9UPT8 1303 aaKnown RBP16.11■□□□□ 0.17
SRP54-203ENST00000553544 GLTPD2A6NH11 291 aa16.1■□□□□ 0.17
SRP54-203ENST00000553544 LMNB1P20700 586 aa16.1■□□□□ 0.17
SRP54-203ENST00000553544 USPL1Q5W0Q7 1092 aa16.1■□□□□ 0.17
SRP54-203ENST00000553544 ZNF831Q5JPB2 1677 aa16.1■□□□□ 0.17
SRP54-203ENST00000553544 WDR90Q96KV7 1748 aa16.09■□□□□ 0.17
SRP54-203ENST00000553544 KDM6AO15550 1401 aaPredicted RBP16.09■□□□□ 0.17
SRP54-203ENST00000553544 SULT6B1Q6IMI4 303 aa16.08■□□□□ 0.16
SRP54-203ENST00000553544 TTLL6Q8N841 843 aa16.08■□□□□ 0.16
SRP54-203ENST00000553544 RASSF7Q02833 373 aa16.07■□□□□ 0.16
SRP54-203ENST00000553544 AEBP1Q8IUX7 1158 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms